mirror of
https://https.git.savannah.gnu.org/git/guix.git/
synced 2025-07-15 03:20:43 +02:00
gnu: Add r-airway.
* gnu/packages/bioconductor.scm (r-airway): New variable. Change-Id: I521c1bf868566f80997c8ba80609fd5709a95694
This commit is contained in:
parent
dedc157d71
commit
0b64bb6ee5
1 changed files with 31 additions and 0 deletions
|
@ -2019,6 +2019,37 @@ of modifications to @dfn{oxidized cysteine} (Cys) 34 in @dfn{human serum
|
|||
albumin} (HSA).")
|
||||
(license license:artistic2.0)))
|
||||
|
||||
(define-public r-airway
|
||||
(package
|
||||
(name "r-airway")
|
||||
(version "1.26.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "airway" version
|
||||
'experiment))
|
||||
(sha256
|
||||
(base32 "0cj8s2pxydq7n644lf07vb9g89gqbd91s3m0d0x1qvbp1sskp536"))))
|
||||
(properties `((upstream-name . "airway")))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs (list r-summarizedexperiment))
|
||||
(native-inputs (list r-knitr))
|
||||
(home-page "https://bioconductor.org/packages/airway")
|
||||
(synopsis
|
||||
"RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells")
|
||||
(description
|
||||
"This package provides a @code{RangedSummarizedExperiment} object of read
|
||||
counts in genes for an RNA-Seq experiment on four human airway smooth muscle
|
||||
cell lines treated with dexamethasone. Details on the gene model and read
|
||||
counting procedure are provided in the package vignette. The citation for the
|
||||
experiment is: Himes BE, Jiang X, Wagner P, Hu R, Wang Q, Klanderman B,
|
||||
Whitaker RM, Duan Q, Lasky-Su J, Nikolos C, Jester W, Johnson M, Panettieri R
|
||||
Jr, Tantisira KG, Weiss ST, Lu Q. RNA-Seq Transcriptome Profiling Identifies
|
||||
CRISPLD2 as a Glucocorticoid Responsive Gene that Modulates Cytokine Function
|
||||
in Airway Smooth Muscle Cells. P@code{LoS} One. 2014 Jun 13;9(6):e99625.
|
||||
PMID: 24926665. GEO: GSE52778.")
|
||||
(license license:lgpl2.0+)))
|
||||
|
||||
(define-public r-aneufinderdata
|
||||
(package
|
||||
(name "r-aneufinderdata")
|
||||
|
|
Loading…
Add table
Add a link
Reference in a new issue