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gnu: Add r-airway.

* gnu/packages/bioconductor.scm (r-airway): New variable.

Change-Id: I521c1bf868566f80997c8ba80609fd5709a95694
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Ricardo Wurmus 2024-12-01 08:52:28 +01:00
parent dedc157d71
commit 0b64bb6ee5
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@ -2019,6 +2019,37 @@ of modifications to @dfn{oxidized cysteine} (Cys) 34 in @dfn{human serum
albumin} (HSA).")
(license license:artistic2.0)))
(define-public r-airway
(package
(name "r-airway")
(version "1.26.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "airway" version
'experiment))
(sha256
(base32 "0cj8s2pxydq7n644lf07vb9g89gqbd91s3m0d0x1qvbp1sskp536"))))
(properties `((upstream-name . "airway")))
(build-system r-build-system)
(propagated-inputs (list r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/airway")
(synopsis
"RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells")
(description
"This package provides a @code{RangedSummarizedExperiment} object of read
counts in genes for an RNA-Seq experiment on four human airway smooth muscle
cell lines treated with dexamethasone. Details on the gene model and read
counting procedure are provided in the package vignette. The citation for the
experiment is: Himes BE, Jiang X, Wagner P, Hu R, Wang Q, Klanderman B,
Whitaker RM, Duan Q, Lasky-Su J, Nikolos C, Jester W, Johnson M, Panettieri R
Jr, Tantisira KG, Weiss ST, Lu Q. RNA-Seq Transcriptome Profiling Identifies
CRISPLD2 as a Glucocorticoid Responsive Gene that Modulates Cytokine Function
in Airway Smooth Muscle Cells. P@code{LoS} One. 2014 Jun 13;9(6):e99625.
PMID: 24926665. GEO: GSE52778.")
(license license:lgpl2.0+)))
(define-public r-aneufinderdata
(package
(name "r-aneufinderdata")