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gnu: Add r-bsseq.
* gnu/packages/bioconductor.scm (r-bsseq): New variable.
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@ -14510,6 +14510,52 @@ estimated efficient influence function. The procedure accommodates the use of
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ensemble machine learning for the estimation of nuisance functions.")
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ensemble machine learning for the estimation of nuisance functions.")
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(license license:expat)))
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(license license:expat)))
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(define-public r-bsseq
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(package
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(name "r-bsseq")
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(version "1.28.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "bsseq" version))
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(sha256
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(base32
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"1xpv85hr681kkkilsnasndkszwmzbzq11y0lff4na2ilsm7sqmmi"))))
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(properties `((upstream-name . "bsseq")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-beachmat" ,r-beachmat)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocparallel" ,r-biocparallel)
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("r-biostrings" ,r-biostrings)
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("r-bsgenome" ,r-bsgenome)
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("r-data-table" ,r-data-table)
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("r-delayedarray" ,r-delayedarray)
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("r-delayedmatrixstats" ,r-delayedmatrixstats)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-gtools" ,r-gtools)
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("r-hdf5array" ,r-hdf5array)
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("r-iranges" ,r-iranges)
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("r-limma" ,r-limma)
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("r-locfit" ,r-locfit)
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("r-permute" ,r-permute)
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("r-r-utils" ,r-r-utils)
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("r-rcpp" ,r-rcpp)
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("r-rhdf5" ,r-rhdf5)
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("r-s4vectors" ,r-s4vectors)
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("r-scales" ,r-scales)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://github.com/hansenlab/bsseq")
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(synopsis "Analyze, manage and store bisulfite sequencing data")
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(description
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"This package provides a collection of tools for analyzing and
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visualizing bisulfite sequencing data.")
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(license license:artistic2.0)))
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(define-public r-tximeta
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(define-public r-tximeta
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(package
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(package
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(name "r-tximeta")
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(name "r-tximeta")
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