From 12968c767557db81f7bf15b61e07e936e8970e2e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 28 Nov 2024 13:39:05 +0100
Subject: [PATCH] gnu: r-lefser: Add missing inputs.

* gnu/packages/bioconductor.scm (r-lefser)[native-inputs]: Add r-mia and
r-withr; remove r-testthat.
[properties]: Tell updater to keep r-mia.

Change-Id: I791e6626a3d000f12a149cdc87979389aee886f0
---
 gnu/packages/bioconductor.scm | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 31eb92cb5d..9ffe7a6ecf 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -17082,7 +17082,9 @@ and Infinium HD arrays are also included.")
               (sha256
                (base32
                 "1kq64150kjcqfqrnj1vpn83345xpvnxw3kddg5c36hwww3bh2mpj"))))
-    (properties `((upstream-name . "lefser")))
+    (properties
+     `((upstream-name . "lefser")
+       (updater-extra-native-inputs . ("r-mia"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-coin
@@ -17097,7 +17099,7 @@ and Infinium HD arrays are also included.")
            r-testthat
            r-tibble
            r-tidyr))
-    (native-inputs (list r-knitr r-testthat))
+    (native-inputs (list r-knitr r-mia r-withr))
     (home-page "https://github.com/waldronlab/lefser")
     (synopsis "LEfSE method for microbiome biomarker discovery")
     (description