Merge branch 'master' into staging

.mailmap

@@ -43,6 +43,7 @@ Mathieu Lirzin <mthl@gnu.org> <mathieu.lirzin@openmailbox.org>
 Mathieu Othacehe <m.othacehe@gmail.com>
 Nikita Karetnikov <nikita@karetnikov.org> <nikita.karetnikov@gmail.com>
 Nils Gillmann <ng0@n0.is> ng0 <ng0@n0.is>
+Nils Gillmann <ng0@n0.is> Nils Gillmann <gillmann@infotropique.org>
 Nils Gillmann <ng0@n0.is> ng0 <ng0@crash.cx>
 Nils Gillmann <ng0@n0.is> ng0 <ng0@crash.cx>
 Nils Gillmann <ng0@n0.is> <ng0@infotropique.org>
@@ -55,6 +56,7 @@ Nils Gillmann <ng0@n0.is> <ngillmann@runbox.com>
 Nils Gillmann <ng0@n0.is> <niasterisk@grrlz.net>
 Nils Gillmann <ng0@n0.is> <ng@niasterisk.space>
 Nils Gillmann <ng0@n0.is> <ng0@libertad.pw>
+Pierre-Antoine Rouby <pierre-antoine.rouby@inria.fr>
 Pjotr Prins <pjotr.guix@thebird.nl> <pjotr.public01@thebird.nl>
 Pjotr Prins <pjotr.guix@thebird.nl> <pjotr.public12@thebird.nl>
 Pjotr Prins <pjotr.guix@thebird.nl> <pjotr.public12@email>

HACKING

@@ -27,7 +27,7 @@ mailing list.  When you get commit access, please make sure to follow the
 policy below (discussions of the policy can take place on guix-devel@gnu.org.)
 
 Non-trivial patches should always be posted to guix-patches@gnu.org (trivial
-patches include fixing typos, etc.)  This mailing list fills the
+patches include fixing typos, etc.).  This mailing list fills the
 patch-tracking database at [[https://bugs.gnu.org/guix-patches]]; see
 "Contributing" in the manual for details.
 

Makefile.am

@@ -85,6 +85,7 @@ MODULES =					\
   guix/nar.scm					\
   guix/derivations.scm				\
   guix/grafts.scm				\
+  guix/inferior.scm				\
   guix/gnu-maintenance.scm			\
   guix/self.scm					\
   guix/upstream.scm				\
@@ -110,6 +111,7 @@ MODULES =					\
   guix/build-system/asdf.scm			\
   guix/build-system/glib-or-gtk.scm		\
   guix/build-system/gnu.scm			\
+  guix/build-system/guile.scm			\
   guix/build-system/haskell.scm			\
   guix/build-system/perl.scm			\
   guix/build-system/python.scm			\
@@ -148,6 +150,7 @@ MODULES =					\
   guix/build/glib-or-gtk-build-system.scm	\
   guix/build/gnu-build-system.scm		\
   guix/build/gnu-dist.scm			\
+  guix/build/guile-build-system.scm		\
   guix/build/perl-build-system.scm		\
   guix/build/python-build-system.scm		\
   guix/build/ocaml-build-system.scm		\
@@ -200,6 +203,7 @@ MODULES =					\
   guix/scripts/substitute.scm			\
   guix/scripts/authenticate.scm			\
   guix/scripts/refresh.scm			\
+  guix/scripts/repl.scm				\
   guix/scripts/system.scm			\
   guix/scripts/system/search.scm		\
   guix/scripts/lint.scm				\
@@ -231,11 +235,13 @@ MODULES +=					\
   guix/import/github.scm   			\
   guix/import/gnome.scm				\
   guix/import/json.scm				\
+  guix/import/opam.scm				\
   guix/import/pypi.scm				\
   guix/import/stackage.scm			\
   guix/scripts/import/crate.scm			\
   guix/scripts/import/gem.scm			\
   guix/scripts/import/json.scm  		\
+  guix/scripts/import/opam.scm			\
   guix/scripts/import/pypi.scm			\
   guix/scripts/import/stackage.scm		\
   guix/scripts/weather.scm
@@ -355,6 +361,7 @@ SCM_TESTS =					\
   tests/profiles.scm				\
   tests/search-paths.scm			\
   tests/syscalls.scm				\
+  tests/inferior.scm				\
   tests/gremlin.scm				\
   tests/bournish.scm				\
   tests/lint.scm				\
@@ -382,6 +389,7 @@ if HAVE_GUILE_JSON
 
 SCM_TESTS += 					\
   tests/pypi.scm				\
+  tests/opam.scm				\
   tests/cpan.scm				\
   tests/gem.scm					\
   tests/crate.scm
@@ -492,8 +500,6 @@ EXTRA_DIST +=						\
   build-aux/run-system-tests.scm			\
   d3.v3.js						\
   graph.js						\
-  srfi/srfi-64.scm					\
-  srfi/srfi-64.upstream.scm				\
   tests/test.drv					\
   tests/signing-key.pub					\
   tests/signing-key.sec					\

doc/contributing.texi

@@ -212,7 +212,8 @@ The commit message snippets depend on @url{https://magit.vc/, Magit} to
 display staged files.  When editing a commit message type @code{add}
 followed by @kbd{TAB} to insert a commit message template for adding a
 package; type @code{update} followed by @kbd{TAB} to insert a template
-for updating a package.
+for updating a package; type @code{https} followed by @kbd{TAB} to
+insert a template for changing the home page URI of a package to HTTPS.
 
 The main snippet for @code{scheme-mode} is triggered by typing
 @code{package...} followed by @kbd{TAB}.  This snippet also inserts the

doc/guix.texi

@@ -27,7 +27,7 @@ Copyright @copyright{} 2016, 2017, 2018 Chris Marusich@*
 Copyright @copyright{} 2016, 2017, 2018 Efraim Flashner@*
 Copyright @copyright{} 2016 John Darrington@*
 Copyright @copyright{} 2016, 2017 Nils Gillmann@*
-Copyright @copyright{} 2016, 2017 Jan Nieuwenhuizen@*
+Copyright @copyright{} 2016, 2017, 2018 Jan Nieuwenhuizen@*
 Copyright @copyright{} 2016 Julien Lepiller@*
 Copyright @copyright{} 2016 Alex ter Weele@*
 Copyright @copyright{} 2017, 2018 Clément Lassieur@*
@@ -48,7 +48,8 @@ Copyright @copyright{} 2017 nee@*
 Copyright @copyright{} 2018 Rutger Helling@*
 Copyright @copyright{} 2018 Oleg Pykhalov@*
 Copyright @copyright{} 2018 Mike Gerwitz@*
-Copyright @copyright{} 2018 Pierre-Antoine Rouby
+Copyright @copyright{} 2018 Pierre-Antoine Rouby@*
+Copyright @copyright{} 2018 Gábor Boskovits@*
 
 Permission is granted to copy, distribute and/or modify this document
 under the terms of the GNU Free Documentation License, Version 1.3 or
@@ -165,6 +166,7 @@ Programming Interface
 * Derivations::                 Low-level interface to package derivations.
 * The Store Monad::             Purely functional interface to the store.
 * G-Expressions::               Manipulating build expressions.
+* Invoking guix repl::          Fiddling with Guix interactively.
 
 Defining Packages
 
@@ -429,7 +431,7 @@ Installing goes along these lines:
 @item
 @cindex downloading Guix binary
 Download the binary tarball from
-@indicateurl{ftp://alpha.gnu.org/gnu/guix/guix-binary-@value{VERSION}.@var{system}.tar.xz},
+@indicateurl{https://alpha.gnu.org/gnu/guix/guix-binary-@value{VERSION}.@var{system}.tar.xz},
 where @var{system} is @code{x86_64-linux} for an @code{x86_64} machine
 already running the kernel Linux, and so on.
 
@@ -438,7 +440,7 @@ Make sure to download the associated @file{.sig} file and to verify the
 authenticity of the tarball against it, along these lines:
 
 @example
-$ wget ftp://alpha.gnu.org/gnu/guix/guix-binary-@value{VERSION}.@var{system}.tar.xz.sig
+$ wget https://alpha.gnu.org/gnu/guix/guix-binary-@value{VERSION}.@var{system}.tar.xz.sig
 $ gpg --verify guix-binary-@value{VERSION}.@var{system}.tar.xz.sig
 @end example
 
@@ -1373,8 +1375,8 @@ derivations.
 @cindex garbage collector roots
 When set to ``yes'', the GC will keep the outputs of any live derivation
 available in the store---the @code{.drv} files.  The default is ``no'',
-meaning that derivation outputs are kept only if they are GC roots.
+meaning that derivation outputs are kept only if they are reachable from a GC
-@xref{Invoking guix gc}, for more on GC roots.
+root.  @xref{Invoking guix gc}, for more on GC roots.
 
 @item --gc-keep-derivations[=yes|no]
 Tell whether the garbage collector (GC) must keep derivations
@@ -1385,12 +1387,13 @@ derivations---i.e., @code{.drv} files---as long as at least one of their
 outputs is live.  This allows users to keep track of the origins of
 items in their store.  Setting it to ``no'' saves a bit of disk space.
 
-Note that when both @code{--gc-keep-derivations} and
+In this way, setting @code{--gc-keep-derivations} to ``yes'' causes liveness
-@code{--gc-keep-outputs} are used, the effect is to keep all the build
+to flow from outputs to derivations, and setting @code{--gc-keep-outputs} to
-prerequisites (the sources, compiler, libraries, and other build-time
+``yes'' causes liveness to flow from derivations to outputs.  When both are
-tools) of live objects in the store, regardless of whether these
+set to ``yes'', the effect is to keep all the build prerequisites (the
-prerequisites are live.  This is convenient for developers since it
+sources, compiler, libraries, and other build-time tools) of live objects in
-saves rebuilds or downloads.
+the store, regardless of whether these prerequisites are reachable from a GC
+root.  This is convenient for developers since it saves rebuilds or downloads.
 
 @item --impersonate-linux-2.6
 On Linux-based systems, impersonate Linux 2.6.  This means that the
@@ -2784,12 +2787,18 @@ Generation 2	Jun 11 2018 11:02:49
     repository URL: https://git.savannah.gnu.org/git/guix.git
     branch: origin/master
     commit: e0cc7f669bec22c37481dd03a7941c7d11a64f1d
+  2 new packages: keepalived, libnfnetlink
+  6 packages upgraded: emacs-nix-mode@@2.0.4,
+    guile2.0-guix@@0.14.0-12.77a1aac, guix@@0.14.0-12.77a1aac,
+    heimdal@@7.5.0, milkytracker@@1.02.00, nix@@2.0.4
 
 Generation 3	Jun 13 2018 23:31:07	(current)
   guix 844cc1c
     repository URL: https://git.savannah.gnu.org/git/guix.git
     branch: origin/master
     commit: 844cc1c8f394f03b404c5bb3aee086922373490c
+  28 new packages: emacs-helm-ls-git, emacs-helm-mu, @dots{}
+  69 packages upgraded: borg@@1.1.6, cheese@@3.28.0, @dots{}
 @end example
 
 This @code{~/.config/guix/current} profile works like any other profile
@@ -3266,6 +3275,7 @@ package definitions.
 * Derivations::                 Low-level interface to package derivations.
 * The Store Monad::             Purely functional interface to the store.
 * G-Expressions::               Manipulating build expressions.
+* Invoking guix repl::          Fiddling with Guix interactively.
 @end menu
 
 @node Defining Packages
@@ -4036,6 +4046,21 @@ specified with the @code{#:glib} parameter.
 Both phases are executed after the @code{install} phase.
 @end defvr
 
+@defvr {Scheme Variable} guile-build-system
+This build system is for Guile packages that consist exclusively of Scheme
+code and that are so lean that they don't even have a makefile, let alone a
+@file{configure} script.  It compiles Scheme code using @command{guild
+compile} (@pxref{Compilation,,, guile, GNU Guile Reference Manual}) and
+installs the @file{.scm} and @file{.go} files in the right place.  It also
+installs documentation.
+
+This build system supports cross-compilation by using the @code{--target}
+option of @command{guild compile}.
+
+Packages built with @code{guile-build-system} must provide a Guile package in
+their @code{native-inputs} field.
+@end defvr
+
 @defvr {Scheme Variable} minify-build-system
 This variable is exported by @code{(guix build-system minify)}.  It
 implements a minification procedure for simple JavaScript packages.
@@ -4915,6 +4940,12 @@ containing @var{text}, a string.  @var{references} is a list of store items that
 resulting text file refers to; it defaults to the empty list.
 @end deffn
 
+@deffn {Monadic Procedure} binary-file @var{name} @var{data} [@var{references}]
+Return as a monadic value the absolute file name in the store of the file
+containing @var{data}, a bytevector.  @var{references} is a list of store
+items that the resulting binary file refers to; it defaults to the empty list.
+@end deffn
+
 @deffn {Monadic Procedure} interned-file @var{file} [@var{name}] @
          [#:recursive? #t] [#:select? (const #t)]
 Return the name of @var{file} once interned in the store.  Use
@@ -5348,7 +5379,7 @@ procedure (@pxref{The Store Monad, @code{interned-file}}).
 
 @deffn {Scheme Procedure} plain-file @var{name} @var{content}
 Return an object representing a text file called @var{name} with the given
-@var{content} (a string) to be added to the store.
+@var{content} (a string or a bytevector) to be added to the store.
 
 This is the declarative counterpart of @code{text-file}.
 @end deffn
@@ -5537,6 +5568,57 @@ corresponding to @var{obj} for @var{system}, cross-compiling for
 has an associated gexp compiler, such as a @code{<package>}.
 @end deffn
 
+@node Invoking guix repl
+@section Invoking @command{guix repl}
+
+@cindex REPL, read-eval-print loop
+The @command{guix repl} command spawns a Guile @dfn{read-eval-print loop}
+(REPL) for interactive programming (@pxref{Using Guile Interactively,,, guile,
+GNU Guile Reference Manual}).  Compared to just launching the @command{guile}
+command, @command{guix repl} guarantees that all the Guix modules and all its
+dependencies are available in the search path.  You can use it this way:
+
+@example
+$ guix repl
+scheme@@(guile-user)> ,use (gnu packages base)
+scheme@@(guile-user)> coreutils
+$1 = #<package coreutils@@8.29 gnu/packages/base.scm:327 3e28300>
+@end example
+
+@cindex inferiors
+In addition, @command{guix repl} implements a simple machine-readable REPL
+protocol for use by @code{(guix inferior)}, a facility to interact with
+@dfn{inferiors}, separate processes running a potentially different revision
+of Guix.
+
+The available options are as follows:
+
+@table @code
+@item --type=@var{type}
+@itemx -t @var{type}
+Start a REPL of the given @var{TYPE}, which can be one of the following:
+
+@table @code
+@item guile
+This is default, and it spawns a standard full-featured Guile REPL.
+@item machine
+Spawn a REPL that uses the machine-readable protocol.  This is the protocol
+that the @code{(guix inferior)} module speaks.
+@end table
+
+@item --listen=@var{endpoint}
+By default, @command{guix repl} reads from standard input and writes to
+standard output.  When this option is passed, it will instead listen for
+connections on @var{endpoint}.  Here are examples of valid options:
+
+@table @code
+@item --listen=tcp:37146
+Accept connections on localhost on port 37146.
+
+@item --listen=unix:/tmp/socket
+Accept connections on the Unix-domain socket @file{/tmp/socket}.
+@end table
+@end table
 
 @c *********************************************************************
 @node Utilities
@@ -6379,6 +6461,14 @@ The command below imports metadata for the @code{rails} Ruby package:
 guix import gem rails
 @end example
 
+@table @code
+@item --recursive
+@itemx -r
+Traverse the dependency graph of the given upstream package recursively
+and generate package expressions for all those packages that are not yet
+in Guix.
+@end table
+
 @item cpan
 @cindex CPAN
 Import metadata from @uref{https://www.metacpan.org/, MetaCPAN}@footnote{This
@@ -6660,6 +6750,12 @@ in Guix.
 @cindex crate
 Import metadata from the crates.io Rust package repository
 @uref{https://crates.io, crates.io}.
+
+@item opam
+@cindex OPAM
+@cindex OCaml
+Import metadata from the @uref{https://opam.ocaml.org/, OPAM} package
+repository used by the OCaml community.
 @end table
 
 The structure of the @command{guix import} code is modular.  It would be
@@ -8392,7 +8488,7 @@ about their support in GNU/Linux.
 
 An ISO-9660 installation image that can be written to a USB stick or
 burnt to a DVD can be downloaded from
-@indicateurl{ftp://alpha.gnu.org/gnu/guix/guixsd-install-@value{VERSION}.@var{system}.iso.xz},
+@indicateurl{https://alpha.gnu.org/gnu/guix/guixsd-install-@value{VERSION}.@var{system}.iso.xz},
 where @var{system} is one of:
 
 @table @code
@@ -8408,7 +8504,7 @@ Make sure to download the associated @file{.sig} file and to verify the
 authenticity of the image against it, along these lines:
 
 @example
-$ wget ftp://alpha.gnu.org/gnu/guix/guixsd-install-@value{VERSION}.@var{system}.iso.xz.sig
+$ wget https://alpha.gnu.org/gnu/guix/guixsd-install-@value{VERSION}.@var{system}.iso.xz.sig
 $ gpg --verify guixsd-install-@value{VERSION}.@var{system}.iso.xz.sig
 @end example
 
@@ -10829,6 +10925,21 @@ gexps to introduce job definitions that are passed to mcron
 for more information on mcron job specifications.  Below is the
 reference of the mcron service.
 
+On a running system, you can use the @code{schedule} action of the service to
+visualize the mcron jobs that will be executed next:
+
+@example
+# herd schedule mcron
+@end example
+
+@noindent
+The example above lists the next five tasks that will be executed, but you can
+also specify the number of tasks to display:
+
+@example
+# herd schedule mcron 10
+@end example
+
 @deffn {Scheme Procedure} mcron-service @var{jobs} [#:mcron @var{mcron}]
 Return an mcron service running @var{mcron} that schedules @var{jobs}, a
 list of gexps denoting mcron job specifications.
@@ -12046,7 +12157,7 @@ secure connections to the print server.
 
 Suppose you want to enable the Web interface of CUPS and also add
 support for Epson printers @i{via} the @code{escpr} package and for HP
-printers @i{via} the @code{hplip} package.  You can do that directly,
+printers @i{via} the @code{hplip-minimal} package.  You can do that directly,
 like this (you need to use the @code{(gnu packages cups)} module):
 
 @example
@@ -12054,9 +12165,13 @@ like this (you need to use the @code{(gnu packages cups)} module):
          (cups-configuration
            (web-interface? #t)
            (extensions
-             (list cups-filters escpr hplip))))
+             (list cups-filters escpr hplip-minimal))))
 @end example
 
+Note: If you wish to use the Qt5 based GUI which comes with the hplip
+package then it is suggested that you install the @code{hplip} package,
+either in your OS configuration file or as your user.
+
 The available configuration parameters follow.  Each parameter
 definition is preceded by its type; for example, @samp{string-list foo}
 indicates that the @code{foo} parameter should be specified as a list of
@@ -15649,6 +15764,39 @@ Specify the path of the base URL.  This can be useful if
 @end table
 @end deftp
 
+@subsubheading Prometheus Node Exporter Service
+
+@cindex prometheus-node-exporter
+The Prometheus ``node exporter'' makes hardware and operating system statistics
+provided by the Linux kernel available for the Prometheus monitoring system.
+This service should be deployed on all physical nodes and virtual machines,
+where monitoring these statistics is desirable.
+
+@defvar {Scheme variable} prometheus-node-exporter-service-type
+This is the service type for the
+@uref{https://github.com/prometheus/node_exporter/, prometheus-node-exporter}
+service, its value must be a @code{prometheus-node-exporter-configuration}
+record as in this example:
+
+@example
+(service prometheus-node-exporter-service-type
+         (prometheus-node-exporter-configuration
+           (web-listen-address ":9100")))
+@end example
+@end defvar
+
+@deftp {Data Type} prometheus-node-exporter-configuration
+Data type representing the configuration of @command{node_exporter}.
+
+@table @asis
+@item @code{package} (default: @code{go-github-com-prometheus-node-exporter})
+The prometheus-node-exporter package to use.
+
+@item @code{web-listen-address} (default: @code{":9100"})
+Bind the web interface to the specified address.
+
+@end table
+@end deftp
 
 @node Kerberos Services
 @subsubsection Kerberos Services
@@ -17614,10 +17762,6 @@ Only evaluate specifications and build derivations once.
 When substituting a pre-built binary fails, fall back to building
 packages locally.
 
-@item @code{load-path} (default: @code{'()})
-This allows users to define their own packages and make them visible to
-cuirass as in @command{guix build} command.
-
 @item @code{cuirass} (default: @code{cuirass})
 The Cuirass package to use.
 @end table
@@ -21323,7 +21467,7 @@ example graph.
 @cindex virtual machine
 To run GuixSD in a virtual machine (VM), one can either use the
 pre-built GuixSD VM image distributed at
-@indicateurl{ftp://alpha.gnu.org/guix/guixsd-vm-image-@value{VERSION}.@var{system}.tar.xz}
+@indicateurl{https://alpha.gnu.org/gnu/guix/guixsd-vm-image-@value{VERSION}.@var{system}.xz}
 , or build their own virtual machine image using @command{guix system
 vm-image} (@pxref{Invoking guix system}).  The returned image is in
 qcow2 format, which the @uref{http://qemu.org/, QEMU emulator} can
@@ -21915,6 +22059,17 @@ Constructors,,, shepherd, The GNU Shepherd Manual}).  They are given as
 G-expressions that get expanded in the Shepherd configuration file
 (@pxref{G-Expressions}).
 
+@item @code{actions} (default: @code{'()})
+@cindex actions, of Shepherd services
+This is a list of @code{shepherd-action} objects (see below) defining
+@dfn{actions} supported by the service, in addition to the standard
+@code{start} and @code{stop} actions.  Actions listed here become available as
+@command{herd} sub-commands:
+
+@example
+herd @var{action} @var{service} [@var{arguments}@dots{}]
+@end example
+
 @item @code{documentation}
 A documentation string, as shown when running:
 
@@ -21932,6 +22087,54 @@ This is the list of modules that must be in scope when @code{start} and
 @end table
 @end deftp
 
+@deftp {Data Type} shepherd-action
+This is the data type that defines additional actions implemented by a
+Shepherd service (see above).
+
+@table @code
+@item name
+Symbol naming the action.
+
+@item documentation
+This is a documentation string for the action.  It can be viewed by running:
+
+@example
+herd doc @var{service} action @var{action}
+@end example
+
+@item procedure
+This should be a gexp that evaluates to a procedure of at least one argument,
+which is the ``running value'' of the service (@pxref{Slots of services,,,
+shepherd, The GNU Shepherd Manual}).
+@end table
+
+The following example defines an action called @code{say-hello} that kindly
+greets the user:
+
+@example
+(shepherd-action
+  (name 'say-hello)
+  (documentation "Say hi!")
+  (procedure #~(lambda (running . args)
+                 (format #t "Hello, friend! arguments: ~s\n"
+                         args)
+                 #t)))
+@end example
+
+Assuming this action is added to the @code{example} service, then you can do:
+
+@example
+# herd say-hello example
+Hello, friend! arguments: ()
+# herd say-hello example a b c
+Hello, friend! arguments: ("a" "b" "c")
+@end example
+
+This, as you can see, is a fairly sophisticated way to say hello.
+@xref{Service Convenience,,, shepherd, The GNU Shepherd Manual}, for more
+info on actions.
+@end deftp
+
 @defvr {Scheme Variable} shepherd-root-service-type
 The service type for the Shepherd ``root service''---i.e., PID@tie{}1.
 

etc/snippets/scheme-mode/guix-package

@@ -7,7 +7,8 @@
     (name "$1")
     (version "$2")
     (source origin...$0)
-    (build-system ${3:$$(yas-choose-value "ant-build-system"
+    (build-system ${3:$$(yas-choose-value "android-ndk-build-system"
+                                          "ant-build-system"
                                           "asdf-build-system"
                                           "cargo-build-system"
                                           "cmake-build-system"
@@ -25,6 +26,7 @@
                                           "python-build-system"
                                           "r-build-system"
                                           "ruby-build-system"
+                                          "scons-build-system"
                                           "texlive-build-system"
                                           "trivial-build-system"
                                           "waf-build-system")})

etc/snippets/text-mode/guix-commit-message-use-https-home-page

@@ -0,0 +1,9 @@
+# -*- mode: snippet -*-
+# name: guix-commit-message-use-https-home-page
+# key: https
+# condition: git-commit-mode
+# --
+gnu: $1: Use HTTPS home page URI.
+
+* `(car (magit-staged-files))` ($1)[home-page]: Use HTTPS URI.
+`(mapconcat (lambda (file) (concat "* " file)) (cdr (magit-staged-files)) "\n")`

gnu/local.mk

@@ -15,9 +15,10 @@
 # Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
 # Copyright © 2017, 2018 Clément Lassieur <clement@lassieur.org>
 # Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
-# Copyright © 2017 Gábor Boskovits <boskovits@gmail.com>
+# Copyright © 2017, 2018 Gábor Boskovits <boskovits@gmail.com>
 # Copyright © 2018 Amirouche Boubekki <amirouche@hypermove.net>
 # Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com>
+# Copyright © 2018 Stefan Stefanović <stefanx2ovic@gmail.com>
 #
 # This file is part of GNU Guix.
 #
@@ -403,6 +404,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/sssd.scm				\
   %D%/packages/stalonetray.scm			\
   %D%/packages/statistics.scm			\
+  %D%/packages/stb.scm				\
   %D%/packages/storage.scm			\
   %D%/packages/suckless.scm			\
   %D%/packages/swig.scm				\
@@ -530,6 +532,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/tests/databases.scm			\
   %D%/tests/desktop.scm				\
   %D%/tests/dict.scm				\
+  %D%/tests/monitoring.scm                      \
   %D%/tests/nfs.scm				\
   %D%/tests/install.scm				\
   %D%/tests/mail.scm				\
@@ -583,7 +586,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/bash-completion-directories.patch	\
   %D%/packages/patches/bazaar-CVE-2017-14176.patch		\
   %D%/packages/patches/beignet-correct-file-names.patch		\
-  %D%/packages/patches/bind-CVE-2018-5738.patch			\
   %D%/packages/patches/binutils-aarch64-symbol-relocation.patch	\
   %D%/packages/patches/binutils-loongson-workaround.patch	\
   %D%/packages/patches/blast+-fix-makefile.patch		\
@@ -671,13 +673,10 @@ dist_patch_DATA =						\
   %D%/packages/patches/fcgi-2.4.0-poll.patch			\
   %D%/packages/patches/fifo-map-fix-flags-for-gcc.patch		\
   %D%/packages/patches/fifo-map-remove-catch.hpp.patch		\
-  %D%/packages/patches/file-CVE-2017-1000249.patch		\
   %D%/packages/patches/findutils-localstatedir.patch		\
   %D%/packages/patches/findutils-test-xargs.patch		\
   %D%/packages/patches/flann-cmake-3.11.patch			\
   %D%/packages/patches/flint-ldconfig.patch			\
-  %D%/packages/patches/fltk-shared-lib-defines.patch		\
-  %D%/packages/patches/fltk-xfont-on-demand.patch		\
   %D%/packages/patches/foomatic-filters-CVE-2015-8327.patch	\
   %D%/packages/patches/foomatic-filters-CVE-2015-8560.patch	\
   %D%/packages/patches/freeimage-CVE-2015-0852.patch		\
@@ -716,6 +715,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/geoclue-config.patch			\
   %D%/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch \
   %D%/packages/patches/ghc-dont-pass-linker-flags-via-response-files.patch	\
+  %D%/packages/patches/ghostscript-CVE-2018-10194.patch		\
   %D%/packages/patches/ghostscript-no-header-id.patch		\
   %D%/packages/patches/ghostscript-no-header-uuid.patch		\
   %D%/packages/patches/ghostscript-no-header-creationdate.patch \
@@ -926,6 +926,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/mailutils-uninitialized-memory.patch	\
   %D%/packages/patches/make-glibc-compat.patch			\
   %D%/packages/patches/make-impure-dirs.patch			\
+  %D%/packages/patches/mariadb-gcc-ice.patch			\
   %D%/packages/patches/mars-install.patch			\
   %D%/packages/patches/mars-sfml-2.3.patch			\
   %D%/packages/patches/maxima-defsystem-mkdir.patch		\
@@ -942,6 +943,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/mingw-w64-5.0rc2-gcc-4.9.3.patch		\
   %D%/packages/patches/mpc123-initialize-ao.patch		\
   %D%/packages/patches/module-init-tools-moduledir.patch	\
+  %D%/packages/patches/monero-use-system-miniupnpc.patch			\
   %D%/packages/patches/mongodb-support-unknown-linux-distributions.patch	\
   %D%/packages/patches/mozjs17-aarch64-support.patch		\
   %D%/packages/patches/mozjs24-aarch64-support.patch		\
@@ -979,12 +981,12 @@ dist_patch_DATA =						\
   %D%/packages/patches/ocaml-graph-honor-source-date-epoch.patch	\
   %D%/packages/patches/omake-fix-non-determinism.patch	\
   %D%/packages/patches/ola-readdir-r.patch			\
+  %D%/packages/patches/openbabel-fix-crash-on-nwchem-output.patch	\
   %D%/packages/patches/opencascade-oce-glibc-2.26.patch		\
   %D%/packages/patches/openexr-missing-samples.patch		\
   %D%/packages/patches/openfoam-4.1-cleanup.patch			\
   %D%/packages/patches/openldap-CVE-2017-9287.patch		\
   %D%/packages/patches/openocd-nrf52.patch			\
-  %D%/packages/patches/openscenegraph-ffmpeg3.patch             \
   %D%/packages/patches/opensmtpd-fix-crash.patch		\
   %D%/packages/patches/openssl-runpath.patch			\
   %D%/packages/patches/openssl-1.0.2-CVE-2018-0495.patch	\
@@ -1015,6 +1017,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/perl-net-amazon-s3-moose-warning.patch	\
   %D%/packages/patches/perl-net-dns-resolver-programmable-fix.patch	\
   %D%/packages/patches/perl-no-sys-dirs.patch			\
+  %D%/packages/patches/perl-text-markdown-discount-unbundle.patch	\
   %D%/packages/patches/perl-module-pluggable-search.patch	\
   %D%/packages/patches/perl-reproducible-build-date.patch	\
   %D%/packages/patches/perl-www-curl-remove-symbol.patch	\
@@ -1048,6 +1051,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/pybugz-stty.patch			\
   %D%/packages/patches/pygpgme-disable-problematic-tests.patch  \
   %D%/packages/patches/pyqt-configure.patch			\
+  %D%/packages/patches/pyqt-public-sip.patch			\
   %D%/packages/patches/python-2-deterministic-build-info.patch	\
   %D%/packages/patches/python-2.7-adjust-tests.patch		\
   %D%/packages/patches/python-2.7-search-paths.patch		\
@@ -1057,6 +1061,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-3-search-paths.patch		\
   %D%/packages/patches/python-3-fix-tests.patch			\
   %D%/packages/patches/python-axolotl-AES-fix.patch		\
+  %D%/packages/patches/python-cairocffi-dlopen-path.patch	\
   %D%/packages/patches/python-dendropy-fix-tests.patch		\
   %D%/packages/patches/python-fix-tests.patch			\
   %D%/packages/patches/python-genshi-add-support-for-python-3.4-AST.patch	\
@@ -1090,7 +1095,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/qtoctave-qt-5.11-fix.patch		\
   %D%/packages/patches/qtscript-disable-tests.patch		\
   %D%/packages/patches/quagga-reproducible-build.patch          \
-  %D%/packages/patches/quassel-qt-5.11.patch			\
   %D%/packages/patches/quickswitch-fix-dmenu-check.patch	\
   %D%/packages/patches/rapicorn-isnan.patch			\
   %D%/packages/patches/raptor2-heap-overflow.patch		\
@@ -1106,18 +1110,20 @@ dist_patch_DATA =						\
   %D%/packages/patches/rpcbind-CVE-2017-8779.patch		\
   %D%/packages/patches/rsem-makefile.patch			\
   %D%/packages/patches/rtags-separate-rct.patch			\
+  %D%/packages/patches/racket-fix-xform-issue.patch		\
   %D%/packages/patches/ruby-rubygems-276-for-ruby24.patch	\
   %D%/packages/patches/ruby-concurrent-ignore-broken-test.patch	\
   %D%/packages/patches/ruby-concurrent-test-arm.patch		\
   %D%/packages/patches/ruby-rack-ignore-failing-test.patch      \
   %D%/packages/patches/ruby-tzinfo-data-ignore-broken-test.patch\
+  %D%/packages/patches/rust-bootstrap-stage0-test.patch		\
+  %D%/packages/patches/rust-coresimd-doctest.patch		\
   %D%/packages/patches/rxvt-unicode-escape-sequences.patch	\
   %D%/packages/patches/scheme48-tests.patch			\
   %D%/packages/patches/scotch-test-threading.patch		\
   %D%/packages/patches/scotch-build-parallelism.patch		\
   %D%/packages/patches/scotch-graph-diam-64.patch		\
   %D%/packages/patches/scotch-graph-induce-type-64.patch	\
-  %D%/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch  \
   %D%/packages/patches/sdl-libx11-1.6.patch			\
   %D%/packages/patches/seq24-rename-mutex.patch			\
   %D%/packages/patches/sharutils-CVE-2018-1000097.patch		\
@@ -1157,6 +1163,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/tophat-build-with-later-seqan.patch	\
   %D%/packages/patches/totem-meson-easy-codec.patch		\
   %D%/packages/patches/tuxpaint-stamps-path.patch		\
+  %D%/packages/patches/twinkle-include-qregexpvalidator.patch	\
   %D%/packages/patches/unrtf-CVE-2016-10091.patch		\
   %D%/packages/patches/unzip-CVE-2014-8139.patch		\
   %D%/packages/patches/unzip-CVE-2014-8140.patch		\
@@ -1206,7 +1213,9 @@ dist_patch_DATA =						\
   %D%/packages/patches/wpa-supplicant-fix-nonce-reuse.patch	\
   %D%/packages/patches/wpa-supplicant-krack-followups.patch	\
   %D%/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch	\
+  %D%/packages/patches/x265-arm-asm-primitives.patch		\
   %D%/packages/patches/x265-fix-ppc64le-build.patch		\
+  %D%/packages/patches/xapian-revert-5489fb2f8.patch		\
   %D%/packages/patches/xboing-CVE-2004-0149.patch		\
   %D%/packages/patches/xdotool-fix-makefile.patch               \
   %D%/packages/patches/xf86-video-ark-remove-mibstore.patch	\
@@ -1224,6 +1233,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/xinetd-fix-fd-leak.patch			\
   %D%/packages/patches/xinetd-CVE-2013-4342.patch		\
   %D%/packages/patches/xmodmap-asprintf.patch 			\
+  %D%/packages/patches/xorg-server-rotate-fb.patch		\
   %D%/packages/patches/zathura-pdf-mupdf-link-to-jpeg-libraries.patch \
   %D%/packages/patches/zathura-plugindir-environment-variable.patch	\
   %D%/packages/patches/zstd-fix-stdin-list-without-tty.patch	\

gnu/packages/admin.scm

@@ -46,6 +46,7 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
@@ -1772,27 +1773,18 @@ platform-specific methods.")
 (define-public audit
   (package
     (name "audit")
-    (version "2.4.5")
+    (home-page "https://people.redhat.com/sgrubb/audit/")
+    (version "2.8.4")
     (source (origin
               (method url-fetch)
-              (uri (string-append "https://people.redhat.com/sgrubb/audit/"
+              (uri (string-append home-page name "-" version ".tar.gz"))
-                                  "audit-" version ".tar.gz"))
               (sha256
                (base32
-                "1q1q51dvxscbi4kbakmd4bn0xrvwwaiwvaya79925cbrqwzxsg77"))))
+                "0f4ci6ffznnmgblwgv7ich9mjfk3p6y5l6m6h3chhmzw156nj454"))))
     (build-system gnu-build-system)
-    (home-page "https://people.redhat.com/sgrubb/audit/")
     (arguments
-     `(#:configure-flags (list "--with-python=no")
+     `(#:configure-flags (list "--with-python=no"
-       #:phases
+                               "--disable-static")))
-       (modify-phases %standard-phases
-         (add-after 'unpack 'fix-tests
-           (lambda _
-             ;; In the build environmnte /etc/passwd does not contain an entry
-             ;; for root/0, so we have to patch the expected value.
-             (substitute* "auparse/test/auparse_test.ref"
-               (("=0 \\(root\\)") "=0 (unknown(0))"))
-             #t)))))
     (inputs
      `(("openldap" ,openldap)
        ("gnutls" ,gnutls)
@@ -2740,3 +2732,30 @@ support forum.  It runs with the @code{/exec} command in most IRC clients.")
        ;; perl-xml-dumper
        ;; ipmitool
        ,@(package-inputs inxi-minimal)))))
+
+(define-public pscircle
+  (package
+    (name "pscircle")
+    (version "1.1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://gitlab.com/mildlyparallel/pscircle/-/archive/v"
+             version "/pscircle-v" version ".tar.gz"))
+       (file-name (string-append name "-" version ".tar.gz"))
+       (sha256
+        (base32
+         "1k757yf2bmgfrjd417l6kpcf83hlvi0z1791vz967mwcklrsb3fj"))))
+    (build-system meson-build-system)
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (inputs
+     `(("cairo" ,cairo)
+       ("libpng" ,libpng)
+       ("libx11" ,libx11)))
+    (home-page "https://gitlab.com/mildlyparallel/pscircle")
+    (synopsis "Visualize Linux processes in a form of radial tree")
+    (description
+     "@code{pscircle} visualizes Linux processes in the form of a radial tree.")
+    (license license:gpl2+)))

gnu/packages/algebra.scm

@@ -139,7 +139,7 @@ solve the shortest vector problem.")
 (define-public pari-gp
   (package
    (name "pari-gp")
-   (version "2.9.4")
+   (version "2.11.0")
    (source (origin
             (method url-fetch)
             (uri (string-append
@@ -147,7 +147,7 @@ solve the shortest vector problem.")
                   version ".tar.gz"))
             (sha256
               (base32
-                "0ir6m3a8r46md5x6zk4xf159qra7aqparby9zk03k81hjrrxr72g"))))
+                "18f9yj8ffn3dxignbxj1x36771zbxy4js0r18mv6831ymb6cld9q"))))
    (build-system gnu-build-system)
    (native-inputs `(("texlive" ,texlive-tiny)))
    (inputs `(("gmp" ,gmp)
@@ -179,7 +179,7 @@ PARI is also available as a C library to allow for faster computations.")
 (define-public gp2c
   (package
    (name "gp2c")
-   (version "0.0.10")
+   (version "0.0.11")
    (source (origin
             (method url-fetch)
             (uri (string-append
@@ -187,7 +187,7 @@ PARI is also available as a C library to allow for faster computations.")
                   version ".tar.gz"))
             (sha256
               (base32
-                "1xhpz5p81iw261ay1kip283ggr0ir8ydz8qx3v24z8jfms1r3y70"))))
+                "1z69xj2dpd8yyi8108rz26c50xpv0k2j8qnk0bzy1c5lw3pd1adm"))))
    (build-system gnu-build-system)
    (native-inputs `(("perl" ,perl)))
    (inputs `(("pari-gp" ,pari-gp)))
@@ -315,7 +315,7 @@ fast arithmetic.")
 (define-public arb
   (package
    (name "arb")
-   (version "2.13.0")
+   (version "2.14.0")
    (source (origin
             (method url-fetch)
             (uri (string-append
@@ -324,7 +324,7 @@ fast arithmetic.")
             (file-name (string-append name "-" version ".tar.gz"))
             (sha256
               (base32
-                "123p3gwx0s3i88rcaj3g4jl37cr3pywhpqackipskzab15ni2xfh"))))
+                "0ncr27nd20xxi18nj30cvpa6r52v59nq7gbi34x3l4xym3p8mlmx"))))
    (build-system gnu-build-system)
    (propagated-inputs
     `(("flint" ,flint))) ; flint.h is included by arf.h
@@ -342,19 +342,18 @@ fast arithmetic.")
                   (mpfr (assoc-ref inputs "mpfr")))
               ;; do not pass "--enable-fast-install", which makes the
               ;; homebrew configure process fail
-              (zero? (system*
+              (invoke "./configure"
-                      "./configure"
                       (string-append "--prefix=" out)
                       (string-append "--with-flint=" flint)
                       (string-append "--with-gmp=" gmp)
-                      (string-append "--with-mpfr=" mpfr)))))))))
+                      (string-append "--with-mpfr=" mpfr))))))))
    (synopsis "Arbitrary precision floating-point ball arithmetic")
    (description
     "Arb is a C library for arbitrary-precision floating-point ball
 arithmetic.  It supports efficient high-precision computation with
 polynomials, power series, matrices and special functions over the
 real and complex numbers, with automatic, rigorous error control.")
-   (license license:gpl2+)
+   (license license:lgpl2.1+)
    (home-page "http://fredrikj.net/arb/")))
 
 (define-public ntl

gnu/packages/aspell.scm

@@ -27,6 +27,7 @@
   #:use-module (guix download)
   #:use-module (guix build-system gnu)
   #:use-module (guix licenses)
+  #:use-module (guix utils)
   #:use-module (gnu packages)
   #:use-module (gnu packages base)
   #:use-module (gnu packages compression)
@@ -49,6 +50,19 @@
     (arguments
      `(#:phases
        (modify-phases %standard-phases
+         (add-before 'build 'set-filter-path
+           (lambda* (#:key outputs #:allow-other-keys)
+             ;; Change the default value of 'filter-path' so that filters such
+             ;; as 'tex-filter.so' can be found.  By default none of the
+             ;; filters would be found.
+             (let* ((out    (assoc-ref outputs "out"))
+                    (libdir (string-append out "/lib/aspell-"
+                                           ,(version-major+minor version))))
+               (substitute* "common/config.cpp"
+                 (("\"filter-path(.*)DICT_DIR" _ middle)
+                  (string-append "\"filter-path" middle
+                                 "\"" libdir "\"")))
+               #t)))
          (add-after 'install 'wrap-aspell
            (lambda* (#:key outputs #:allow-other-keys)
              (let ((bin/aspell (string-append (assoc-ref outputs "out")
@@ -141,10 +155,10 @@ dictionaries, including personal ones.")
 
 (define-public aspell-dict-en
   (aspell-dictionary "en" "English"
-                     #:version "2017.08.24-0"
+                     #:version "2018.04.16-0"
                      #:sha256
                      (base32
-                      "0z2vvm1by485cm0sna21cmw6zb771c2l2lnn676zmrwm46q65d89")))
+                      "0bxxdzkk9g27plg22y9qzsx9cfjw3aa29w5bmzs561qc9gkp247i")))
 
 (define-public aspell-dict-eo
   (aspell-dictionary "eo" "Esperanto"

gnu/packages/audio.scm

@@ -2513,7 +2513,7 @@ encode and decode wavpack files.")
 (define-public libmodplug
   (package
     (name "libmodplug")
-    (version "0.8.8.5")
+    (version "0.8.9.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2521,7 +2521,7 @@ encode and decode wavpack files.")
                     name "/" version "/" name "-" version ".tar.gz"))
               (sha256
                (base32
-                "1bfsladg7h6vnii47dd66f5vh1ir7qv12mfb8n36qiwrxq92sikp"))))
+                "1pnri98a603xk47smnxr551svbmgbzcw018mq1k6srbrq6kaaz25"))))
     (build-system gnu-build-system)
     (home-page "http://modplug-xmms.sourceforge.net/")
     (synopsis "Mod file playing library")

gnu/packages/bioinformatics.scm

@@ -10,6 +10,7 @@
 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
+;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -3240,12 +3241,16 @@ VCF.")
                                            (msg (format #f
                                                         "\
 Class-Path: /~a \
- ~a/share/java/htsjdk.jar${line.separator}"
+ ~a/share/java/htsjdk.jar${line.separator}${line.separator}"
                                                         ;; maximum line length is 70
                                                         (string-tabulate (const #\b) 57)
                                                         (assoc-ref inputs "java-htsjdk"))))
                                        (if (member "manifest" name)
                                            `(,tag ,@kids
+                                                  (replaceregexp
+                                                   (@ (file "${manifest.file}")
+                                                      (match "\\r\\n\\r\\n")
+                                                      (replace "${line.separator}")))
                                                   (echo
                                                    (@ (message ,msg)
                                                       (file "${manifest.file}")
@@ -3760,13 +3765,13 @@ experiments.")
 (define-public macs
   (package
     (name "macs")
-    (version "2.1.0.20151222")
+    (version "2.1.1.20160309")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "MACS2" version))
               (sha256
                (base32
-                "1r2hcz6irhcq7lwbafjks98jbn34hv05avgbdjnp6w6mlfjkf8x5"))))
+                "09ixspd1vcqmz1c81ih70xs4m7qml2iy5vyx1y74zww3iy1vl210"))))
     (build-system python-build-system)
     (arguments
      `(#:python ,python-2 ; only compatible with Python 2.7
@@ -12828,11 +12833,12 @@ once.  This package provides tools to perform Drop-seq analyses.")
            (lambda _
              (substitute* "Makefile.in"
                (("(^  tests/test_trim_galore/test.sh).*" _ m) m)
+               (("^  tests/test_multiqc/test.sh") "")
                (("^  test.sh") ""))
              #t)))))
     (inputs
      `(("gzip" ,gzip)
-       ("snakemake" ,snakemake)
+       ("snakemake" ,snakemake-4)
        ("fastqc" ,fastqc)
        ("multiqc" ,multiqc)
        ("star" ,star)
@@ -12926,7 +12932,7 @@ expression report comparing samples in an easily configurable manner.")
        ("fastqc" ,fastqc)
        ("bowtie" ,bowtie)
        ("idr" ,idr)
-       ("snakemake" ,snakemake)
+       ("snakemake" ,snakemake-4)
        ("samtools" ,samtools)
        ("bedtools" ,bedtools)
        ("kentutils" ,kentutils)))
@@ -12987,7 +12993,7 @@ in an easily configurable manner.")
        ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc-with-pandoc-1)
        ("python-wrapper" ,python-wrapper)
        ("python-pyyaml" ,python-pyyaml)
-       ("snakemake" ,snakemake)
+       ("snakemake" ,snakemake-4)
        ("bismark" ,bismark)
        ("fastqc" ,fastqc)
        ("bowtie" ,bowtie)
@@ -13036,7 +13042,7 @@ methylation and segmentation.")
        ("python-loompy" ,python-loompy)
        ("ghc-pandoc" ,ghc-pandoc-1)
        ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc-with-pandoc-1)
-       ("snakemake" ,snakemake)
+       ("snakemake" ,snakemake-4)
        ("star" ,star)
        ("r-minimal" ,r-minimal)
        ("r-argparser" ,r-argparser)

gnu/packages/bittorrent.scm

@@ -373,7 +373,7 @@ and will take advantage of multiple processor cores where possible.")
 (define-public libtorrent-rasterbar
   (package
     (name "libtorrent-rasterbar")
-    (version "1.1.7")
+    (version "1.1.8")
     (source (origin
               (method url-fetch)
               (uri
@@ -383,7 +383,7 @@ and will take advantage of multiple processor cores where possible.")
                 "/libtorrent-rasterbar-" version ".tar.gz"))
               (sha256
                (base32
-                "1agkcyjs7xscx4sgkg2ri4nm4v736xsg3br2v8jcrph86dlbycw1"))))
+                "0pcdy26l5ivcs78y2bqh2qca83ikzjfchw5815xh69qf8g88zgvb"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags

gnu/packages/bootloaders.scm

@@ -357,7 +357,7 @@ tree binary files.  These are board description files used by Linux and BSD.")
 (define u-boot
   (package
     (name "u-boot")
-    (version "2018.05")
+    (version "2018.07")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -365,10 +365,12 @@ tree binary files.  These are board description files used by Linux and BSD.")
                     "u-boot-" version ".tar.bz2"))
               (sha256
                (base32
-                "0j60p4iskzb4hamxgykc6gd7xchxfka1zwh8hv08r9rrc4m3r8ad"))))
+                "1m7nw64mxflpc6sqvnz2kb5fxfkb4mrpy8b1wi15dcwipj4dy44z"))))
     (native-inputs
      `(("bc" ,bc)
+       ("bison" ,bison)
        ("dtc" ,dtc)
+       ("flex" ,flex)
        ("openssl" ,openssl)
        ("python-2" ,python-2)
        ("python2-coverage" ,python2-coverage)
@@ -423,8 +425,7 @@ def test_ctrl_c"))
              (apply invoke "make" "tools_defconfig" make-flags)))
          (replace 'build
            (lambda* (#:key inputs make-flags #:allow-other-keys)
-             (apply invoke "make" "tools-only" make-flags)
+             (apply invoke "make" "tools-all" make-flags)))
-             (apply invoke "make" "envtools" make-flags)))
          (replace 'install
            (lambda* (#:key outputs #:allow-other-keys)
              (let* ((out (assoc-ref outputs "out"))
@@ -441,7 +442,8 @@ def test_ctrl_c"))
                            "tools/mkimage"
                            "tools/proftool"
                            "tools/fdtgrep"
-                           "tools/env/fw_printenv"))
+                           "tools/env/fw_printenv"
+                           "tools/sunxi-spl-image-builder"))
                #t)))
            (delete 'check)
            (add-after 'install 'check
@@ -506,7 +508,18 @@ board-independent tools.")))
                (let* ((out (assoc-ref outputs "out"))
                       (libexec (string-append out "/libexec"))
                       (uboot-files (append
-                                    (find-files "." ".*\\.(bin|efi|img|spl|itb|dtb|rksd)$")
+                                    (remove
+                                     ;; Those would not be reproducible
+                                     ;; because of the randomness used
+                                     ;; to produce them.
+                                     ;; It's expected that the user will
+                                     ;; use u-boot-tools to generate them
+                                     ;; instead.
+                                     (lambda (name)
+                                       (string-suffix?
+                                        "sunxi-spl-with-ecc.bin"
+                                        name))
+                                     (find-files "." ".*\\.(bin|efi|img|spl|itb|dtb|rksd)$"))
                                     (find-files "." "^(MLO|SPL)$"))))
                  (mkdir-p libexec)
                  (install-file ".config" libexec)
@@ -517,7 +530,8 @@ board-independent tools.")))
                     (let ((target-file (string-append libexec "/" file)))
                       (mkdir-p (dirname target-file))
                       (copy-file file target-file)))
-                  uboot-files))))))))))
+                  uboot-files)
+                 #t)))))))))
 
 (define-public u-boot-vexpress
   (make-u-boot-package "vexpress_ca9x4" "arm-linux-gnueabihf"))
@@ -577,6 +591,9 @@ board-independent tools.")))
 (define-public u-boot-cubieboard
   (make-u-boot-package "Cubieboard" "arm-linux-gnueabihf"))
 
+(define-public u-boot-cubietruck
+  (make-u-boot-package "Cubietruck" "arm-linux-gnueabihf"))
+
 (define-public u-boot-puma-rk3399
   (let ((base (make-u-boot-package "puma-rk3399" "aarch64-linux-gnu")))
     (package

gnu/packages/busybox.scm

@@ -1,6 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2014 John Darrington <jmd@gnu.org>
-;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -31,7 +31,7 @@
 (define-public busybox
   (package
     (name "busybox")
-    (version "1.26.2")
+    (version "1.29.1")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -39,11 +39,18 @@
                     version ".tar.bz2"))
               (sha256
                (base32
-                "05mg6rh5smkzfwqfcazkpwy6h6555llsazikqnvwkaf17y8l8gns"))))
+                "1hqlr5b3bsyb6avadz1z4za6pyl32r1krnpcpwwqilhnx8q0f9gw"))))
     (build-system gnu-build-system)
     (arguments
      '(#:phases
        (modify-phases %standard-phases
+         (add-before 'configure 'disable-taskset
+           ;; This feature fails its tests in the build environment,
+           ;; was default 'n' until after 1.26.2.
+           (lambda _
+             (substitute* "util-linux/taskset.c"
+               (("default y") "default n"))
+             #t))
          (replace 'configure
            (lambda _ (invoke "make" "defconfig")))
          (replace 'check

gnu/packages/cdrom.scm

@@ -418,7 +418,7 @@ graphical interface.")
 (define-public libcue
   (package
     (name "libcue")
-    (version "2.2.0")
+    (version "2.2.1")
     (source (origin
              (method url-fetch)
              (uri (string-append
@@ -427,8 +427,10 @@ graphical interface.")
              (file-name (string-append name "-" version ".tar.gz"))
              (sha256
               (base32
-               "0y9808vbly1w6i3diaad9csjmmw6iaw572wjjr68ssqamsw193rj"))))
+               "000j5xqp7cc7njwlixr9byahz9kn8pcfdgm76afwv4p8nbmw6yzj"))))
     (build-system cmake-build-system)
+    (arguments
+     `(#:configure-flags '("-DBUILD_SHARED_LIBS=ON")))
     (native-inputs
      `(("bison" ,bison)
        ("flex" ,flex)))

gnu/packages/chemistry.scm

@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2018 Konrad Hinsen <konrad.hinsen@fastmail.net>
+;;; Copyright © 2018 Kei Kebreau <kkebreau@posteo.net>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -20,9 +21,16 @@
   #:use-module (guix packages)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix download)
+  #:use-module (gnu packages)
+  #:use-module (gnu packages algebra)
+  #:use-module (gnu packages compression)
   #:use-module (gnu packages gv)
   #:use-module (gnu packages maths)
+  #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages python)
+  #:use-module (gnu packages xml)
+  #:use-module (guix build-system cmake)
+  #:use-module (guix build-system gnu)
   #:use-module (guix build-system python))
 
 (define-public domainfinder
@@ -54,6 +62,84 @@ single structure.  The software is currently not actively maintained and works
 only with Python 2 and NumPy < 1.9.")
     (license license:cecill-c)))
 
+(define-public inchi
+  (package
+    (name "inchi")
+    (version "1.05")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "http://www.inchi-trust.org/download/"
+                                  (string-join (string-split version #\.) "")
+                                  "/INCHI-1-SRC.zip"))
+              (sha256
+               (base32
+                "081pcjx1z5jm23fs1pl2r3bccia0ww8wfkzcjpb7byhn7b513hsa"))
+              (file-name (string-append name "-" version ".zip"))))
+    (build-system gnu-build-system)
+    (arguments
+     '(#:tests? #f ; no check target
+       #:phases
+       (modify-phases %standard-phases
+         (delete 'configure) ; no configure script
+         (add-before 'build 'chdir-to-build-directory
+           (lambda _ (chdir "INCHI_EXE/inchi-1/gcc") #t))
+         (add-after 'build 'build-library
+           (lambda _
+             (chdir "../../../INCHI_API/libinchi/gcc")
+             (invoke "make")))
+         (replace 'install
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (bin (string-append out "/bin"))
+                    (doc (string-append out "/share/doc/inchi"))
+                    (include-dir (string-append out "/include/inchi"))
+                    (lib (string-append out "/lib/inchi"))
+                    (inchi-doc (assoc-ref inputs "inchi-doc"))
+                    (unzip (string-append (assoc-ref inputs "unzip")
+                                          "/bin/unzip")))
+               (chdir "../../..")
+               ;; Install binary.
+               (with-directory-excursion "INCHI_EXE/bin/Linux"
+                 (rename-file "inchi-1" "inchi")
+                 (install-file "inchi" bin))
+               ;; Install libraries.
+               (with-directory-excursion "INCHI_API/bin/Linux"
+                 (for-each (lambda (file)
+                             (install-file file lib))
+                           (find-files "." "libinchi\\.so\\.1\\.*")))
+               ;; Install header files.
+               (with-directory-excursion "INCHI_BASE/src"
+                 (for-each (lambda (file)
+                             (install-file file include-dir))
+                           (find-files "." "\\.h$")))
+               ;; Install documentation.
+               (mkdir-p doc)
+               (invoke unzip "-j" "-d" doc inchi-doc)
+               #t))))))
+    (native-inputs
+     `(("unzip" ,unzip)
+       ("inchi-doc"
+        ,(origin
+           (method url-fetch)
+           (uri (string-append "http://www.inchi-trust.org/download/"
+                                  (string-join (string-split version #\.) "")
+                                  "/INCHI-1-DOC.zip"))
+           (sha256
+            (base32
+             "1id1qb2y4lwsiw91qr2yqpn6kxbwjwhjk0hb2rwk4fxhdqib6da6"))
+           (file-name (string-append name "-" version ".zip"))))))
+    (home-page "https://www.inchi-trust.org")
+    (synopsis "Utility for manipulating machine-readable chemical structures")
+    (description
+     "The @dfn{InChI} (IUPAC International Chemical Identifier) algorithm turns
+chemical structures into machine-readable strings of information.  InChIs are
+unique to the compound they describe and can encode absolute stereochemistry
+making chemicals and chemistry machine-readable and discoverable.  A simple
+analogy is that InChI is the bar-code for chemistry and chemical structures.")
+    (license (license:non-copyleft
+              "file://LICENCE"
+              "See LICENCE in the distribution."))))
+
 (define with-numpy-1.8
   (package-input-rewriting `((,python2-numpy . ,python2-numpy-1.8))))
 
@@ -117,3 +203,42 @@ neutron scattering spectra, but also computes other quantities.  The software
 is currently not actively maintained and works only with Python 2 and
 NumPy < 1.9.")
     (license license:cecill)))
+
+(define-public openbabel
+  (package
+    (name "openbabel")
+    (version "2.4.1")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://sourceforge/" name "/" name "/"
+                                  version "/" name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1z3d6xm70dpfikhwdnbzc66j2l49vq105ch041wivrfz5ic3ch90"))
+              (patches
+               (search-patches "openbabel-fix-crash-on-nwchem-output.patch"))))
+    (build-system cmake-build-system)
+    (arguments
+     `(#:configure-flags
+       (list "-DOPENBABEL_USE_SYSTEM_INCHI=ON"
+             (string-append "-DINCHI_LIBRARY="
+                            (assoc-ref %build-inputs "inchi")
+                            "/lib/inchi/libinchi.so.1")
+             (string-append "-DINCHI_INCLUDE_DIR="
+                            (assoc-ref %build-inputs "inchi") "/include/inchi"))
+       #:test-target "test"))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (inputs
+     `(("eigen" ,eigen)
+       ("inchi" ,inchi)
+       ("libxml2" ,libxml2)
+       ("zlib" ,zlib)))
+    (home-page "http://openbabel.org/wiki/Main_Page")
+    (synopsis "Chemistry data manipulation toolbox")
+    (description
+     "Open Babel is a chemical toolbox designed to speak the many languages of
+chemical data.  It's a collaborative project allowing anyone to search, convert,
+analyze, or store data from molecular modeling, chemistry, solid-state
+materials, biochemistry, or related areas.")
+    (license license:gpl2)))

gnu/packages/ci.scm

@@ -4,6 +4,7 @@
 ;;; Copyright © 2016, 2017 Mathieu Lirzin <mthl@gnu.org>
 ;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
 ;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -184,8 +185,8 @@ their dependencies.")
       (license l:gpl3+))))
 
 (define-public cuirass
-  (let ((commit "238f856e48ee333ed3e19fa32ce5e1742c650c67")
+  (let ((commit "7b2f9e0de1ad2d320973b7aea132a8afcad8bece")
-        (revision "16"))
+        (revision "17"))
     (package
       (name "cuirass")
       (version (string-append "0.0.1-" revision "." (string-take commit 7)))
@@ -197,7 +198,7 @@ their dependencies.")
                 (file-name (string-append name "-" version))
                 (sha256
                  (base32
-                  "15iwdgy561gnsr224rs5z8qn7nrsh1wdlsxr8gwxyk0v4zp6yvbf"))))
+                  "0knww99adgjh8s6f38z3hpwi9hxhmnvqj5g35pcj80xv8j4xj3y3"))))
       (build-system gnu-build-system)
       (arguments
        '(#:modules ((guix build utils)

gnu/packages/compression.scm

@@ -642,16 +642,17 @@ sfArk file format to the uncompressed sf2 format.")
 (define-public libmspack
   (package
     (name "libmspack")
-    (version "0.6")
+    (home-page "https://cabextract.org.uk/libmspack/")
+    (version "0.7")
     (source
      (origin
       (method url-fetch)
-      (uri (string-append "http://www.cabextract.org.uk/libmspack/libmspack-"
+      (uri (string-append home-page name "-" version "alpha.tar.gz"))
-                          version "alpha.tar.gz"))
       (sha256
-       (base32 "08gr2pcinas6bdqz3k0286g5cnksmcx813skmdwyca6bmj1fxnqy"))))
+       (base32 "0wi7ydq8vjiq0kfnpkj2d6vll2s49x38bywnsdqphqb0vdn53q1n"))))
     (build-system gnu-build-system)
-    (home-page "http://www.cabextract.org.uk/libmspack/")
+    (arguments
+     `(#:configure-flags '("--disable-static")))
     (synopsis "Compression tools for some formats used by Microsoft")
     (description
      "The purpose of libmspack is to provide both compression and
@@ -981,24 +982,66 @@ provides encoder and a decoder libraries: libbrotlienc and libbrotlidec,
 respectively, based on the reference implementation from Google.")
       (license license:expat))))
 
+(define-public bsdiff
+  (package
+    (name "bsdiff")
+    (version "4.3")
+    (home-page "https://www.daemonology.net/bsdiff/")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append home-page name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "0j2zm3z271x5aw63mwhr3vymzn45p2vvrlrpm9cz2nywna41b0hq"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:make-flags (list "INSTALL=install" "CC=gcc"
+                          (string-append "PREFIX=" (assoc-ref %outputs "out")))
+       #:phases (modify-phases %standard-phases
+                  (delete 'configure)
+                  (add-before 'build 'fix-Makefile
+                    (lambda _
+                      (substitute* "Makefile"
+                        ;; Adjust syntax to make it compatible with GNU Make.
+                        (("^\\.") "")
+                        ;; Help install(1) create the target directory.
+                        (("\\$\\{PREFIX\\}") "-D -t ${PREFIX}"))
+                      #t)))
+       #:tests? #f)) ;no tests
+    (inputs
+     `(("bzip2" ,bzip2)))
+    (synopsis "Patch binary files")
+    (description
+     "@command{bsdiff} and @command{bspatch} are tools for building and
+applying patches to binary files.  By using suffix sorting (specifically
+Larsson and Sadakane's @code{qsufsort}) and taking advantage of how
+executable files change, bsdiff routinely produces binary patches 50-80%
+smaller than those produced by @code{Xdelta}.")
+    (license license:bsd-2)))
+
 (define-public cabextract
  (package
    (name "cabextract")
-   (version "1.6")
+   (home-page "https://cabextract.org.uk/")
+   (version "1.7")
    (source (origin
               (method url-fetch)
-              (uri (string-append
+              (uri (string-append home-page name "-" version ".tar.gz"))
-                    "http://cabextract.org.uk/cabextract-" version ".tar.gz"))
               (sha256
                (base32
-                "1ysmmz25fjghq7mxb2anyyvr1ljxqxzi4piwjhk0sdamcnsn3rnf"))))
+                "1g86wmb8lkjiv2jarfz979ngbgg7d3si8x5il4g801604v406wi9"))
+              (modules '((guix build utils)))
+              (snippet
+               '(begin
+                  ;; Delete bundled libmspack.
+                  (delete-file-recursively "mspack")
+                  #t))))
     (build-system gnu-build-system)
     (arguments '(#:configure-flags '("--with-external-libmspack")))
     (native-inputs
      `(("pkg-config" ,pkg-config)))
     (inputs
      `(("libmspack" ,libmspack)))
-    (home-page "http://www.cabextract.org.uk/")
     (synopsis "Tool to unpack Cabinet archives")
     (description "Extracts files out of Microsoft Cabinet (.cab) archives")
     ;; Some source files specify gpl2+, lgpl2+, however COPYING is gpl3.
@@ -1889,19 +1932,19 @@ create, manipulate, read, and write Zip archive files.")
 (define-public libzip
   (package
     (name "libzip")
-    (version "1.3.2")
+    (version "1.5.1")
     (source (origin
               (method url-fetch)
               (uri (string-append
                     "https://libzip.org/download/" name "-" version ".tar.xz"))
               (sha256
                (base32
-                "11g1hvm2bxa2v5plakfzcwyk5hb5fz4kgrkp38l0xhnv21888xv2"))))
+                "0wnkkvkq90wyawj9221i77sf3nix1vj3ygzdy59k8yvcjnv3bsh4"))))
     (native-inputs
      `(("perl" ,perl)))
     (inputs
      `(("zlib" ,zlib)))
-    (build-system gnu-build-system)
+    (build-system cmake-build-system)
     (home-page "https://libzip.org")
     (synopsis "C library for reading, creating, and modifying zip archives")
     (description "Libzip is a C library for reading, creating, and modifying

gnu/packages/crypto.scm

@@ -668,25 +668,18 @@ data on your platform, so the seed itself will be as random as possible.
     (license (list license:boost1.0 license:public-domain))))
 
 (define-public libb2
-  (let ((revision "1")                  ; upstream doesn't ‘do’ releases
-        (commit "60ea749837362c226e8501718f505ab138e5c19d"))
   (package
     (name "libb2")
-      (version (git-version "0.0.0" revision commit))
+    (version "0.98")
     (source (origin
-                (method git-fetch)
+              (method url-fetch)
-                (uri (git-reference
+              (uri (string-append
-                      (url "https://github.com/BLAKE2/libb2")
+                    "https://github.com/BLAKE2/libb2/releases/download/v"
-                      (commit commit)))
+                    version "/libb2-" version ".tar.gz"))
-                (file-name (git-file-name name version))
               (sha256
                (base32
-                  "07a2m8basxrsj9dsp5lj24y8jraj85lfy56756a7za1nfkgy04z7"))))
+                "0vq39cvwy05754l565xl11rqr2jvjb6ykjzca886vi9vm71y0sg8"))))
     (build-system gnu-build-system)
-      (native-inputs
-       `(("autoconf" ,autoconf)
-         ("automake" ,automake)
-         ("libtool" ,libtool)))
     (arguments
      `(#:configure-flags
        (list
@@ -709,7 +702,7 @@ implementation for the processor it is run on.
 that are faster than MD5, SHA-1, SHA-2, and SHA-3, yet are at least as secure
 as the latest standard, SHA-3.  It is an improved version of the SHA-3 finalist
 BLAKE.")
-      (license license:public-domain))))
+    (license license:public-domain)))
 
 (define-public rhash
   (package
@@ -755,14 +748,14 @@ SHA256, SHA512, SHA3, AICH, ED2K, Tiger, DC++ TTH, BitTorrent BTIH, GOST R
 (define-public botan
   (package
     (name "botan")
-    (version "2.6.0")
+    (version "2.7.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://botan.randombit.net/releases/"
                                   "Botan-" version ".tgz"))
               (sha256
                (base32
-                "1iawmymmnp5j2mcjj70slivn6bgg8gbpppldc1rjqw5sbdan3wn1"))))
+                "142aqabwc266jxn8wrp0f1ffrmcvdxwvyh8frb38hx9iaqazjbg4"))))
     (build-system gnu-build-system)
     (arguments
      '(#:phases
@@ -797,3 +790,26 @@ specifically designed to be easy to call from other languages.  A Python binding
 using ctypes is included, and several other language bindings are available.")
     (home-page "https://botan.randombit.net")
     (license license:bsd-2)))
+
+(define-public ccrypt
+  (package
+    (name "ccrypt")
+    (version "1.10")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://sourceforge/ccrypt/ccrypt/"
+                                  version "/ccrypt-" version ".tar.gz"))
+              (sha256
+               (base32
+                "184v9676hx2w875cz04rd3a20wrcms33a1zwybvapb0g2yi6vml7"))))
+    (build-system gnu-build-system)
+    (home-page "http://ccrypt.sourceforge.net")
+    (synopsis "Command-line utility for encrypting and decrypting files and streams")
+    (description "@command{ccrypt} is a utility for encrypting and decrypting
+files and streams.  It was designed as a replacement for the standard unix
+@command{crypt} utility, which is notorious for using a very weak encryption
+algorithm.  @command{ccrypt} is based on the Rijndael block cipher, a version of
+which is also used in the Advanced Encryption Standard (AES, see
+@url{http://www.nist.gov/aes}).  This cipher is believed to provide very strong
+security.")
+    (license license:gpl2)))

gnu/packages/cups.scm

@@ -1,7 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2015, 2016, 2017 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2015, 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 Danny Milosavljevic <dannym@scratchpost.org>
 ;;; Copyright © 2017 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2017 Mark H Weaver <mhw@netris.org>
@@ -46,7 +46,9 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix download)
   #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix packages))
+  #:use-module (guix packages)
+  #:use-module (guix utils)
+  #:use-module (srfi srfi-1))
 
 (define-public cups-filters
   (package
@@ -174,6 +176,7 @@ filters for the PDF-centric printing workflow introduced by OpenPrinting.")
 (define-public cups-minimal
   (package
     (name "cups-minimal")
+    (replacement cups-minimal-2.2.8)
     (version "2.2.6")
     (source
      (origin
@@ -234,8 +237,21 @@ describe printer capabilities and features, and a wide variety of generic and
 device-specific programs to convert and print many types of files.")
     (license license:gpl2)))
 
+(define-public cups-minimal-2.2.8
+  (package
+    (inherit cups-minimal)
+    (version "2.2.8")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://github.com/apple/cups/releases/download/v"
+                           version "/cups-" version "-source.tar.gz"))
+       (sha256
+        (base32
+         "1r7r7b3nqpzc1a9dczqpj2mr8rkcwf01676v11sp4j7w4qfzqs1r"))))))
+
 (define-public cups
-  (package (inherit cups-minimal)
+  (package/inherit cups-minimal
     (name "cups")
     (arguments
      `(;; Three tests fail:
@@ -506,6 +522,19 @@ device-specific programs to convert and print many types of files.")
      `(("perl" ,perl)
        ("pkg-config" ,pkg-config)))))
 
+(define-public hplip-minimal
+  (package
+    (inherit hplip)
+    (name "hplip-minimal")
+    (arguments
+      (substitute-keyword-arguments (package-arguments hplip)
+        ((#:configure-flags cf)
+         `(delete "--enable-qt5" ,cf))))
+    (inputs
+     (fold alist-delete (package-inputs hplip)
+           '("python-pygobject" "python-pyqt")))
+    (synopsis "GUI-less version of hplip")))
+
 (define-public foomatic-filters
   (package
     (name "foomatic-filters")

gnu/packages/curl.scm

@@ -51,7 +51,7 @@
   (package
    (name "curl")
    (version "7.59.0")
-   (replacement curl-7.60.0)
+   (replacement curl-7.61.0)
    (source (origin
             (method url-fetch)
             (uri (string-append "https://curl.haxx.se/download/curl-"
@@ -141,10 +141,10 @@ tunneling, and so on.")
                                   "See COPYING in the distribution."))
    (home-page "https://curl.haxx.se/")))
 
-(define-public curl-7.60.0
+(define-public curl-7.61.0
   (package
     (inherit curl)
-    (version "7.60.0")
+    (version "7.61.0")
     (source
       (origin
         (method url-fetch)
@@ -152,7 +152,7 @@ tunneling, and so on.")
                             version ".tar.xz"))
         (sha256
          (base32
-          "1876ck0smbqz3xakm7s6q6gh4zarh9pv3izf4vlzgpc9xn6zydl7"))))))
+          "080p9r2kln8cbfj0rqfn6wqp5kdn9k5wp720nirkcw845lcmavpg"))))))
 
 (define-public kurly
   (package

gnu/packages/databases.scm

@@ -651,7 +651,7 @@ Language.")
                   #t))))
     (build-system cmake-build-system)
     (arguments
-     '(#:configure-flags
+     `(#:configure-flags
        '("-DBUILD_CONFIG=mysql_release"
          ;; Linking with libarchive fails, like this:
 
@@ -684,6 +684,17 @@ Language.")
          "-DINSTALL_SHAREDIR=share")
        #:phases
        (modify-phases %standard-phases
+         ;; Apply this patch that's only needed on ARM.
+         ,@(if (and (not (%current-target-system))
+                    (string=? "armhf-linux" (%current-system)))
+               `((add-after 'unpack 'apply-patch
+                   (lambda* (#:key inputs #:allow-other-keys)
+                     (let ((patch (assoc-ref inputs "gcc-ice-patch")))
+                       (invoke "patch" "-p1" "--force"
+                               "--input" patch)
+                       #t))))
+               '())
+
          (add-after 'unpack 'unbundle
            (lambda _
              ;; The bundled PCRE in MariaDB has a patch that was upstreamed
@@ -771,7 +782,10 @@ Language.")
               #t))))))
     (native-inputs
      `(("bison" ,bison)
-       ("perl" ,perl)))
+       ("perl" ,perl)
+       ,@(if (string=? "armhf-linux" (%current-system))
+             `(("gcc-ice-patch" ,(search-patch "mariadb-gcc-ice.patch")))
+             '())))
     (inputs
      `(("jemalloc" ,jemalloc)
        ("libaio" ,libaio)
@@ -792,6 +806,7 @@ Language.")
 as a drop-in replacement of MySQL.")
     (license license:gpl2)))
 
+;; Don't forget to update the other postgresql packages when upgrading this one.
 (define-public postgresql
   (package
     (name "postgresql")
@@ -840,14 +855,14 @@ pictures, sounds, or video.")
   (package
     (inherit postgresql)
     (name "postgresql")
-    (version "9.6.8")
+    (version "9.6.9")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://ftp.postgresql.org/pub/source/v"
                                   version "/postgresql-" version ".tar.bz2"))
               (sha256
                (base32
-                "0w7bwf19wbdd3jjbjv03cnx56qka4801srcbsayk9v792awv7zga"))))))
+                "0biy8j69dbvdmrag55pdszpc0702agzqhhcwdx21xp02mzim4ydr"))))))
 
 (define-public qdbm
   (package
@@ -1160,14 +1175,14 @@ is in the public domain.")
 (define-public tdb
   (package
     (name "tdb")
-    (version "1.3.15")
+    (version "1.3.16")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://www.samba.org/ftp/tdb/tdb-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0a37jhpij8wr4f4pjqdlwnffy2l6a2vkqdpz1bqxj6v06cwbz8dl"))))
+                "1ibcz466xwk1x6xvzlgzd5va4lyrjzm3rnjak29kkwk7cmhw4gva"))))
     (build-system gnu-build-system)
     (arguments
      '(#:phases

gnu/packages/dav.scm

@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2015, 2016, 2017 Leo Famulari <leo@famulari.name>
+;;; Copyright © 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -57,13 +58,13 @@ clients.")
 (define-public vdirsyncer
   (package
     (name "vdirsyncer")
-    (version "0.16.6")
+    (version "0.16.7")
     (source (origin
              (method url-fetch)
              (uri (pypi-uri name version))
              (sha256
               (base32
-               "07iqq5c53cfrb5xnmam1rsl683hc3rykmdak896n2gm81r361c66"))))
+               "1vqjhn2bffy2bx45a1r14crsyn2cylf5by567g44c4mhpjwwz6vc"))))
     (build-system python-build-system)
     (arguments
      `(#:phases (modify-phases %standard-phases
@@ -73,15 +74,16 @@ clients.")
             (setenv "DETERMINISTIC_TESTS" "true")
             (setenv "DAV_SERVER" "radicale")
             (setenv "REMOTESTORAGE_SERVER" "skip")
-             (zero? (system* "make" "test"))))
+            (invoke "make" "test")))
         (add-after 'install 'manpage
           (lambda* (#:key inputs outputs #:allow-other-keys)
-             (zero? (system* "make" "--directory=docs/" "man"))
+            (invoke "make" "--directory=docs/" "man")
             (install-file
               "docs/_build/man/vdirsyncer.1"
               (string-append
                 (assoc-ref outputs "out")
-                 "/share/man/man1")))))))
+                "/share/man/man1"))
+            #t)))))
     (native-inputs
      `(("python-setuptools-scm" ,python-setuptools-scm)
        ("python-sphinx" ,python-sphinx)
@@ -105,5 +107,5 @@ between two storage locations.  The most popular purpose is to
 synchronize a CalDAV or CardDAV server with a local folder or file.  The
 local data can then be accessed via a variety of programs, none of which
 have to know or worry about syncing to a server.")
-    (home-page "https://github.com/untitaker/vdirsyncer")
+    (home-page "https://github.com/pimutils/vdirsyncer")
     (license bsd-3)))

gnu/packages/debian.scm

@@ -17,6 +17,7 @@
 (define-module (gnu packages debian)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix download)
+  #:use-module (guix git-download)
   #:use-module (guix packages)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system trivial)
@@ -112,15 +113,17 @@ contains the archive keys used for that.")
 (define-public debootstrap
   (package
     (name "debootstrap")
-    (version "1.0.101")
+    (version "1.0.106")
     (source
       (origin
-        (method url-fetch)
+        (method git-fetch)
-        (uri (string-append "mirror://debian/pool/main/d/" name "/"
+        (uri (git-reference
-                            name "_" version ".tar.gz"))
+              (url "https://salsa.debian.org/installer-team/debootstrap.git")
+              (commit version)))
+        (file-name (git-file-name name version))
         (sha256
          (base32
-          "1p1a81s8hq73byd7256iljdls389x2q7w6srgrgfmx5bl1csnzp3"))))
+          "1fm5bgllcwgwizrqi4sn8p4fpbzhbzgwprrfppfq9hqdzbmlfmnv"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases
@@ -165,7 +168,7 @@ contains the archive keys used for that.")
      `(("binutils" ,binutils)
        ("gnupg" ,gnupg)
        ("perl" ,perl)))
-    (home-page "https://anonscm.debian.org/cgit/d-i/debootstrap.git")
+    (home-page "https://tracker.debian.org/pkg/debootstrap")
     (synopsis "Bootstrap a basic Debian system")
     (description "Debootstrap is used to create a Debian base system from
 scratch, without requiring the availability of @code{dpkg} or @code{apt}.

gnu/packages/dictionaries.scm

@@ -257,7 +257,8 @@ and a Python library.")
          (add-after 'install 'emacs-install
            (lambda* (#:key inputs outputs #:allow-other-keys)
              (let* ((out   (assoc-ref outputs "out"))
-                    (dest  (string-append out "/share/emacs/site-lisp"))
+                    (dest  (string-append out "/share/emacs/site-lisp/guix.d/"
+                                          ,name "-" ,version))
                     (emacs (string-append (assoc-ref inputs "emacs") "/bin/emacs")))
                (install-file "google-translate-mode.el" dest)
                (emacs-generate-autoloads ,name dest)))))

gnu/packages/display-managers.scm

@@ -1,12 +1,11 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2013 Joshua Grant <tadni@riseup.net>
-;;; Copyright © 2014 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2014, 2018 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2014 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2017 Sou Bunnbu <iyzsong@gmail.com>
 ;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
-;;; Copyright © 2018 Stefan Stefanović <stefanx2ovic@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -135,7 +134,7 @@ Qt-style API for Wayland clients.")
 (define-public sddm
   (package
     (name "sddm")
-    (version "0.17.0")
+    (version "0.18.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -144,8 +143,7 @@ Qt-style API for Wayland clients.")
                     "sddm-" version ".tar.xz"))
               (sha256
                (base32
-                "0ch6rdppgy2vbzw0c2x9a4c6ry46vx7p6b76d8xbh2nvxh23xv0k"))
+                "0icyi9nqgbp2v6dwh3n3jzff9jv2xy8d4rbsz89hd65x7c3hrv87"))))
-              (patches (search-patches "sddm-fix-build-with-qt-5.11-1024.patch"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -258,7 +256,7 @@ create smooth, animated user interfaces.")
     (inputs
      `(("audit" ,audit)
        ("linux-pam" ,linux-pam)
-       ("util-linux" ,util-linux) ; for sbin/nologin
+       ("shadow" ,shadow)                         ;for sbin/nologin
        ("libgcrypt" ,libgcrypt)
        ("libxcb" ,libxcb)))
     (native-inputs

gnu/packages/dns.scm

@@ -9,6 +9,7 @@
 ;;; Copyright © 2016 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2017 Vasile Dumitrascu <va511e@yahoo.com>
 ;;; Copyright © 2017 Gregor Giesen <giesen@zaehlwerk.net>
+;;; Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -29,7 +30,9 @@
   #:use-module (gnu packages admin)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)
+  #:use-module (gnu packages bash)
   #:use-module (gnu packages databases)
+  #:use-module (gnu packages compression)
   #:use-module (gnu packages crypto)
   #:use-module (gnu packages datastructures)
   #:use-module (gnu packages flex)
@@ -55,7 +58,8 @@
   #:use-module (guix packages)
   #:use-module (guix download)
   #:use-module (guix utils)
-  #:use-module (guix build-system gnu))
+  #:use-module (guix build-system gnu)
+  #:use-module (guix build-system trivial))
 
 (define-public dnsmasq
   (package
@@ -99,16 +103,15 @@ and BOOTP/TFTP for network booting of diskless machines.")
 (define-public isc-bind
   (package
     (name "bind")
-    (version "9.12.1-P2")
+    (version "9.12.2")
     (source (origin
               (method url-fetch)
               (uri (string-append
                     "ftp://ftp.isc.org/isc/bind9/" version "/" name "-"
                     version ".tar.gz"))
-              (patches (search-patches "bind-CVE-2018-5738.patch"))
               (sha256
                (base32
-                "0a9dvyg1dk7vpqn9gz7p5jas3bz7z22bjd66b98g1qk16i2w7rqd"))))
+                "0ll46igs9xfq2qclc5wzqsnj3zv7ssga0544gm24s1m7765lqslz"))))
     (build-system gnu-build-system)
     (outputs `("out" "utils"))
     (inputs
@@ -288,7 +291,7 @@ asynchronous fashion.")
 (define-public unbound
   (package
     (name "unbound")
-    (version "1.6.8")
+    (version "1.7.3")
     (source
      (origin
        (method url-fetch)
@@ -296,7 +299,7 @@ asynchronous fashion.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "0jfxhh4gc5amhndikskz1s7da27ycn442j3l20bm992n7zijid73"))))
+         "0bb0p8nbda77ghx20yfl7hqxm9x709223q35465v99i8v4ay27f1"))))
     (build-system gnu-build-system)
     (outputs '("out" "python"))
     (native-inputs
@@ -576,3 +579,89 @@ synthesis, and on-the-fly re-configuration.")
       license:lgpl2.0+              ; parts of scr/contrib/ucw
       license:public-domain         ; src/contrib/fnv and possibly murmurhash3
       license:gpl3+))))             ; everything else
+
+(define-public ddclient
+  (package
+    (name "ddclient")
+    (version "3.8.3")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://sourceforge/ddclient/ddclient/ddclient-"
+                                  version "/ddclient-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1j8zdn7fy7i0bjk3jf0hxnbnshc2yf054vxq64imxdpfd7n5zgfy"))))
+    (build-system trivial-build-system) ; no Makefile.PL
+    (native-inputs
+     `(("bash" ,bash)
+       ("gzip" ,gzip)
+       ("perl" ,perl)
+       ("tar" ,tar)))
+    (inputs
+     `(("net-tools" ,net-tools)
+       ("inetutils" ,inetutils) ;logger
+       ("perl-io-socket-ssl" ,perl-io-socket-ssl)
+       ("perl-digest-sha1" ,perl-digest-sha1)))
+    (arguments
+     `(#:modules ((guix build utils)
+                  (ice-9 match)
+                  (srfi srfi-26))
+       #:builder
+       (begin
+         (use-modules (guix build utils)
+                      (ice-9 match)
+                      (srfi srfi-26))
+         ;; bootstrap
+         (setenv "PATH" (string-append
+                         (assoc-ref %build-inputs "bash") "/bin" ":"
+                         (assoc-ref %build-inputs "tar") "/bin" ":"
+                         (assoc-ref %build-inputs "gzip") "/bin" ":"
+                         (assoc-ref %build-inputs "perl") "/bin"))
+         ;; extract source
+         (invoke "tar" "xvf" (assoc-ref %build-inputs "source"))
+         ;; package
+         (with-directory-excursion (string-append ,name "-" ,version)
+           (let* ((out (assoc-ref %outputs "out"))
+                  (bin (string-append out "/bin")))
+             (let ((file "ddclient"))
+               (substitute* file
+                 (("/usr/bin/perl") (which "perl"))
+                 ;; Strictly use ‘/etc/ddclient/ddclient.conf’.
+                 (("\\$\\{program\\}\\.conf") "/etc/ddclient/ddclient.conf")
+                 (("\\$etc\\$program.conf") "/etc/ddclient/ddclient.conf")
+                 ;; Strictly use ‘/var/cache/ddclient/ddclient.cache’
+                 (("\\$cachedir\\$program\\.cache")
+                  "/var/cache/ddclient/ddclient.cache"))
+               (install-file file bin)
+               (wrap-program (string-append bin "/" file)
+                 `("PATH" ":" =
+                   ("$PATH"
+                    ,@(map (lambda (input)
+                             (match input
+                               ((name . store)
+                                (string-append store "/bin"))))
+                           %build-inputs)))
+                 `("PERL5LIB" ":" =
+                   ,(delete
+                     ""
+                     (map (match-lambda
+                            (((? (cut string-prefix? "perl-" <>) name) . dir)
+                             (string-append dir "/lib/perl5/site_perl"))
+                            (_ ""))
+                          %build-inputs)))))
+             (for-each (cut install-file <> (string-append out
+                                                           "/share/ddclient"))
+                       (find-files "." "sample.*$")))))))
+    (home-page "https://sourceforge.net/projects/ddclient/")
+    (synopsis "Address updating utility for dynamic DNS services")
+    (description "This package provides a client to update dynamic IP
+addresses with several dynamic DNS service providers, such as
+@uref{https://www.dyndns.com/account/login.html,DynDNS.com}.
+
+This makes it possible to use a fixed hostname (such as myhost.dyndns.org) to
+access a machine with a dynamic IP address.
+
+The client supports both dynamic and (near) static services, as well as MX
+record and alternative name management.  It caches the address, and only
+attempts the update when it has changed.")
+    (license license:gpl2+)))

gnu/packages/dunst.scm

@@ -60,7 +60,7 @@
        ("which" ,which)))
     (inputs
      `(("dbus" ,dbus)
-       ("gdk-pixbuf" ,gdk-pixbuf)
+       ("gdk-pixbuf" ,gdk-pixbuf+svg)   ; for svg support
        ("glib" ,glib)
        ("cairo" ,cairo)
        ("pango" ,pango)

gnu/packages/ebook.scm

@@ -75,7 +75,7 @@
 (define-public calibre
   (package
     (name "calibre")
-    (version "3.17.0")
+    (version "3.28.0")
     (source
       (origin
         (method url-fetch)
@@ -84,7 +84,7 @@
                             version ".tar.xz"))
         (sha256
          (base32
-          "1w6hw1s0d4daa4q2ykzhxdndiq61l8z7ls7rxh7k7p62ia0i5sxp"))
+          "0b3vv03c6m6972sk8zj3zc5sq6b9837irnfgjlqhv9z5i75m0414"))
         ;; Remove non-free or doubtful code, see
         ;; https://lists.gnu.org/archive/html/guix-devel/2015-02/msg00478.html
         (modules '((guix build utils)))

gnu/packages/elixir.scm

@@ -4,6 +4,7 @@
 ;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2017 nee <nee.git@cock.li>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright (C) 2018 Nils Gillmann <ng0@n0.is>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -32,7 +33,7 @@
 (define-public elixir
   (package
     (name "elixir")
-    (version "1.5.3")
+    (version "1.6.6")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/elixir-lang/elixir"
@@ -40,10 +41,11 @@
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "0acnxfwvkx1m1d0h5z051mz95n35zm468hcvc3wpmn17c15h5ihg"))))
+                "0c9qz5hasa59a9x1iwpcqpqj6wdbzpijfxqfmzimwj5z8q37nl3l"))))
     (build-system gnu-build-system)
     (arguments
      `(#:test-target "test"
+       #:parallel-tests? #f ;see <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=32171#23>
        #:make-flags (list (string-append "PREFIX="
                                          (assoc-ref %outputs "out")))
        #:phases

gnu/packages/emacs.scm

@@ -35,6 +35,9 @@
 ;;; Copyright © 2018 Sohom Bhattacharjee <soham.bhattacharjee15@gmail.com>
 ;;; Copyright © 2018 Mathieu Lirzin <mthl@gnu.org>
 ;;; Copyright © 2018 Pierre Neidhardt <ambrevar@gmail.com>
+;;; Copyright © 2018 Tim Gesthuizen <tim.gesthuizen@yahoo.de>
+;;; Copyright © 2018 Jack Hill <jackhill@jackhill.us>
+;;; Copyright © 2018 Pierre-Antoine Rouby <pierre-antoine.rouby@inria.fr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -106,6 +109,7 @@
   #:use-module (gnu packages gd)
   #:use-module (gnu packages fontutils)
   #:use-module (gnu packages password-utils)
+  #:use-module (gnu packages pulseaudio)
   #:use-module (gnu packages xdisorg)
   #:use-module (gnu packages shells)
   #:use-module (gnu packages gnupg)
@@ -198,7 +202,7 @@
        ("libxft" ,libxft)
        ("libtiff" ,libtiff)
        ("giflib" ,giflib)
-       ("libjpeg" ,libjpeg-8)
+       ("libjpeg" ,libjpeg)
        ("imagemagick" ,imagemagick)
        ("acl" ,acl)
 
@@ -729,7 +733,15 @@ programs.")
                     version "/flycheck-" version ".tar"))
               (sha256
                (base32
-                "01rnwan16m7cyyrfca3c5c60mbj2r3knkpzbhji2fczsf0wns240"))))
+                "01rnwan16m7cyyrfca3c5c60mbj2r3knkpzbhji2fczsf0wns240"))
+              (modules '((guix build utils)))
+              (snippet `(begin
+                          ;; Change 'flycheck-version' so that it does not
+                          ;; attempt to get its version from pkg-info.el.
+                          (substitute* "flycheck.el"
+                            (("\\(pkg-info-version-info 'flycheck\\)")
+                             (string-append "\"" ,version "\"")))
+                          #t))))
     (build-system emacs-build-system)
     (propagated-inputs
      `(("emacs-dash" ,emacs-dash)))
@@ -4182,6 +4194,99 @@ errors and strict-mode warnings, smart line-wrapping within comments and
 strings, and code folding.")
     (license license:gpl3+)))
 
+(define-public emacs-nodejs-repl
+  (package
+    (name "emacs-nodejs-repl")
+    (version "0.1.6")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/abicky/nodejs-repl.el"
+                                  "/archive/" version ".tar.gz"))
+              (sha256
+               (base32
+                "0sphg1jxi3a5l0gqdp27d0qgyjaiq2p293av9zm8ksm0vwqp3fr9"))
+              (file-name (string-append name "-" version ".tar.gz"))))
+    (build-system emacs-build-system)
+    (home-page "https://github.com/abicky/nodejs-repl.el")
+    (synopsis "Node.js REPL inside Emacs")
+    (description
+     "This program is derived from comint-mode and provides the following
+features:
+
+@itemize
+@item TAB completion same as Node.js REPL
+@item file name completion in string
+@item incremental history search
+@end itemize")
+    (license license:gpl3+)))
+
+(define-public emacs-typescript-mode
+  (package
+    (name "emacs-typescript-mode")
+    (version "0.3")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://github.com/ananthakumaran/typescript.el"
+                    "/archive/v" version ".tar.gz"))
+              (sha256
+               (base32
+                "1gqjirm8scf0wysm7x97zdfbs4qa5nqdl64jfbkd18iskv5mg3rj"))
+              (file-name (string-append name "-" version ".tar.gz"))))
+    (build-system emacs-build-system)
+    (home-page "https://github.com/ananthakumaran/typescript.el")
+    (synopsis "Emacs major mode for editing Typescript code")
+    (description
+     "This is based on Karl Landstrom's barebones @code{typescript-mode}.
+This is much more robust and works with @code{cc-mode}'s comment
+filling (mostly).  The modifications to the original @code{javascript.el} mode
+mainly consisted in replacing \"javascript\" with \"typescript\"
+
+The main features of this Typescript mode are syntactic highlighting (enabled
+with @code{font-lock-mode} or @code{global-font-lock-mode}), automatic
+indentation and filling of comments and C preprocessor fontification.")
+    (license license:gpl3+)))
+
+(define-public emacs-tide
+  (package
+    (name "emacs-tide")
+    (version "2.8.3.1")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/ananthakumaran/tide"
+                                  "/archive/v" version ".tar.gz"))
+              (sha256
+               (base32
+                "1k0kzqiv1hfs0kqm37947snzhrsmand3i9chvm6a2r5lb8v9q47y"))
+              (file-name (string-append name "-" version ".tar.gz"))))
+    (build-system emacs-build-system)
+    (propagated-inputs
+     `(("emacs-dash" ,emacs-dash)
+       ("emacs-s" ,emacs-s)
+       ("emacs-flycheck" ,flycheck)
+       ("emacs-typescript-mode" ,emacs-typescript-mode)))
+    (home-page "https://github.com/ananthakumaran/tide")
+    (synopsis "Typescript IDE for Emacs")
+    (description
+     "Tide is an Interactive Development Environment (IDE) for Emacs which
+provides the following features:
+
+@itemize
+@item ElDoc
+@item Auto complete
+@item Flycheck
+@item Jump to definition, Jump to type definition
+@item Find occurrences
+@item Rename symbol
+@item Imenu
+@item Compile On Save
+@item Highlight Identifiers
+@item Code Fixes
+@item Code Refactor
+@item Organize Imports
+@end itemize")
+    (license license:gpl3+)))
+
 (define-public emacs-markdown-mode
   (package
     (name "emacs-markdown-mode")
@@ -4479,25 +4584,28 @@ Dust.js, React/JSX, Angularjs, ejs, etc.")
     (license license:gpl3+)))
 
 (define-public emacs-wgrep
+  (let ((commit "414be70bd313e482cd9f0b70fd2daad4ee23497c"))
+    ;; Late commit fixes compatibility issue with Emacs 26+.
     (package
       (name "emacs-wgrep")
-    (version "2.1.10")
+      (version (git-version "2.1.10" "1" commit))
       (source (origin
-              (method url-fetch)
+                (method git-fetch)
-              (uri (string-append
+                (uri (git-reference
-                    "https://github.com/mhayashi1120/Emacs-wgrep/archive/"
+                      (url "https://github.com/mhayashi1120/Emacs-wgrep")
-                    version ".tar.gz"))
+                      (commit commit)))
-              (file-name (string-append name "-" version ".tar.gz"))
+                (file-name (git-file-name name version))
                 (sha256
                  (base32
-                "1r2bpypar70xg6dsx12x1k74f39ww930rday7rgqpyknzsx1k4l1"))))
+                  "1sdhd587q3pg92lhiayph87azhalmf1gzrnsprkmqvnphv7mvks9"))))
       (build-system emacs-build-system)
       (home-page "https://github.com/mhayashi1120/Emacs-wgrep")
       (synopsis "Edit a grep buffer and apply those changes to the files")
       (description
-     "Emacs wgrep allows you to edit a grep buffer and apply those changes to
+       "Emacs wgrep allows you to edit a grep buffer and apply those changes
-the file buffer.")
+to the file buffer.  Several backends are supported beside the classic grep:
-    (license license:gpl3+)))
+ack, ag, helm and pt.")
+      (license license:gpl3+))))
 
 (define-public emacs-helm
   (package
@@ -4761,11 +4869,11 @@ extensions.")
       (license license:gpl3+))))
 
 (define-public emacs-evil-collection
-  (let ((commit "ac21b8957cfc22485cdaa316384edf9cb220d837")
+  (let ((commit "5d739f58118a5a316c4fe25adb4e13ccea3fdc10")
-        (revision "1"))
+        (revision "2"))
     (package
       (name "emacs-evil-collection")
-      (version (git-version "20180617" revision commit))
+      (version (git-version "20180721" revision commit))
       (source (origin
                 (method git-fetch)
                 (uri (git-reference
@@ -4774,7 +4882,7 @@ extensions.")
                 (file-name (string-append name "-" version "-checkout"))
                 (sha256
                  (base32
-                  "082a3c5c2ls9ryqrl5kzb4z6bcprhqx8pypnlj1razbld3lny934"))))
+                  "05p612qncd0cp5q61hq2ag1k558vhb10049xrc88n9l6qwz9bpk3"))))
       (build-system emacs-build-system)
       (propagated-inputs
        `(("emacs-evil" ,emacs-evil)))
@@ -6135,14 +6243,14 @@ which code derived from Kelvin H's org-page.")
 (define-public emacs-xelb
   (package
     (name "emacs-xelb")
-    (version "0.14")
+    (version "0.15")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://elpa.gnu.org/packages/xelb-"
                                   version ".tar"))
               (sha256
                (base32
-                "09flnbjy9ck784kprz036rwg9qk45hpv0w5hz3pz3zhwyk57fv74"))))
+                "031rvgprsqhf344p9wsczr50vj2qcpwdmhxi80jdbrsm7wyxf3qz"))))
     (build-system emacs-build-system)
     ;; The following functions and variables needed by emacs-xelb are
     ;; not included in emacs-minimal:
@@ -6174,7 +6282,7 @@ It should enable you to implement low-level X11 applications.")
 (define-public emacs-exwm
   (package
     (name "emacs-exwm")
-    (version "0.18")
+    (version "0.19")
     (synopsis "Emacs X window manager")
     (source (origin
               (method url-fetch)
@@ -6182,7 +6290,7 @@ It should enable you to implement low-level X11 applications.")
                                   version ".tar"))
               (sha256
                (base32
-                "1shz5bf4v4gg3arjaaldics5qkg3aiiaf3ngys8lb6qyxhcpvh6q"))))
+                "11xd2w4h3zdwkdxypvmcz8s7q72cn76lfr9js77jbizyj6b04lr0"))))
     (build-system emacs-build-system)
     (propagated-inputs
      `(("emacs-xelb" ,emacs-xelb)))
@@ -7262,10 +7370,10 @@ messaging service.")
                  ("bash-completion-prog" (string-append bash "/bin/bash"))))
              #t)))))
    (home-page "https://github.com/szermatt/emacs-bash-completion")
-   (synopsis "BASH completion for the shell buffer")
+   (synopsis "Bash completion for the shell buffer")
    (description
     "@code{bash-completion} defines dynamic completion hooks for shell-mode
-and shell-command prompts that are based on bash completion.")
+and shell-command prompts that are based on Bash completion.")
    (license license:gpl2+)))
 
 (define-public emacs-easy-kill
@@ -8423,6 +8531,10 @@ outline-mode), so there is no such thing like an outshine mode, only
         (base32
          "109fvivsb4r0rbqljngqrmxqvbnbkqlivczx6brrvlr7ci625lhf"))))
     (build-system emacs-build-system)
+    (propagated-inputs
+     `(("emacs-seq" ,emacs-seq)
+       ("emacs-dash" ,emacs-dash)
+       ("emacs-let-alist" ,emacs-let-alist)))
     (home-page "https://github.com/cpitclaudel/biblio.el")
     (synopsis "Browse and import bibliographic references")
     (description "This package provides an extensible Emacs package for
@@ -8457,7 +8569,8 @@ automatically fetched from well-curated sources, and formatted as BibTeX.")
          ("emacs-s" ,emacs-s)
          ("emacs-dash" ,emacs-dash)
          ("emacs-f" ,emacs-f)
-         ("emacs-biblio" ,emacs-biblio)))
+         ("emacs-biblio" ,emacs-biblio)
+         ("emacs-ivy" ,emacs-ivy)))
       (home-page "https://github.com/tmalsburg/helm-bibtex")
       (synopsis "Bibliography manager based on Helm")
       (description "This package provides bibliography manager for Emacs,
@@ -8720,23 +8833,33 @@ navigate and display hierarchy structures.")
       (license license:gpl3+))))
 
 (define-public emacs-pulseaudio-control
-  (let ((commit "08c59e1dc45ec96edb62f34036e82cf5f14c0e8b")
+  (let ((commit "1da372ec79f5d2fb901d1f9f0679fee8848fd011")
-        (revision "1"))
+        (revision "2"))
     (package
       (name "emacs-pulseaudio-control")
-      (version (string-append "0.0.1" "-" revision "."
+      (version (git-version "0.0.1" revision commit))
-                              (string-take commit 7)))
       (source
        (origin
          (method git-fetch)
          (uri (git-reference
                (url "https://github.com/flexibeast/pulseaudio-control.git")
                (commit commit)))
-         (file-name (string-append name "-" version "-checkout"))
+         (file-name (git-file-name name version))
          (sha256
           (base32
-           "10cgg1r00kz2fsnnryvzay5pf8s1pwb1dzlds1fbjdnyfvdgammv"))))
+           "02xrsms2pjqdk6327midi61i5vg2h9cq5jwaxv43ldm68wl7hi6k"))))
       (build-system emacs-build-system)
+      (arguments
+       '(#:phases (modify-phases %standard-phases
+                    (add-after 'unpack 'patch-file-name
+                      (lambda* (#:key inputs #:allow-other-keys)
+                        (let ((pulseaudio (assoc-ref inputs "pulseaudio")))
+                          (chmod "pulseaudio-control.el" #o600)
+                          (emacs-substitute-variables "pulseaudio-control.el"
+                            ("pulseaudio-control-pactl-path"
+                             (string-append pulseaudio "/bin/pactl")))
+                          #t))))))
+      (inputs `(("pulseaudio" ,pulseaudio)))
       (home-page "https://github.com/flexibeast/pulseaudio-control")
       (synopsis "Control @code{pulseaudio} from Emacs")
       (description
@@ -10119,10 +10242,10 @@ keep Parens and Indentation inline with one another.")
     (license license:gpl3+)))
 
 (define-public emacs-helm-eww
-  (let ((commit "5d6c2c66d4694415ef8a16a6d38a37aeae76c5ac"))
+  (let ((commit "1a09f11b2376dec8237df40140f056be8a256ef0"))
     (package
       (name "emacs-helm-eww")
-      (version (git-version "0.1" "1" commit))
+      (version (git-version "0.1" "2" commit))
       (source (origin
                 (method git-fetch)
                 (uri (git-reference
@@ -10131,7 +10254,7 @@ keep Parens and Indentation inline with one another.")
                 (file-name (string-append name "-" version "-checkout"))
                 (sha256
                  (base32
-                  "1x442ylrr7cx587s4rvfh187h3qbkr79qp95qr57a4igxkkw6183"))))
+                  "1kqdjhz2xiqw3bxjhfl9namhqrkbc2x70gcv6ljljya5hbkm62sm"))))
       (propagated-inputs
        `(("emacs-helm" ,emacs-helm)))
       (build-system emacs-build-system)
@@ -10984,10 +11107,10 @@ from @code{emms-source-file-default-directory}.")
       (license license:gpl3+))))
 
 (define-public emacs-helm-exwm
-  (let ((commit "82a856c80c8d295e3be522a01c5a15af50d08990"))
+  (let ((commit "56266f261ba3b3d2753b374b50da20eb768c06f5"))
     (package
       (name "emacs-helm-exwm")
-      (version (git-version "20180523" "1" commit))
+      (version (git-version "20180703" "2" commit))
       (source
        (origin
          (method url-fetch)
@@ -10997,7 +11120,7 @@ from @code{emms-source-file-default-directory}.")
                ".tar.gz"))
          (sha256
           (base32
-           "1xsg2lar1vh7jmj5lnnyi14vssxkgy95sv9r8pbfhbnkjkbjm9pb"))))
+           "0n7hdiajw5vxl8ha2r9r4cl4i7crza25348825wb6acwhhzijxcj"))))
       (build-system emacs-build-system)
       (propagated-inputs
        `(("emacs-helm" ,emacs-helm)
@@ -11205,37 +11328,14 @@ file.")
       (license license:gpl3+))))
 
 (define-public emacs-wgrep-helm
-  (let ((commit "1cdd7c136f1e7565bb13d2df69be3dc77b83698d"))
+  ;; `emacs-wgrep-helm' was mistakenly added.
-    (package
+  (deprecated-package "emacs-wgrep-helm" emacs-wgrep))
-      (name "emacs-wgrep-helm")
-      (version (git-version "2.1.10" "1" commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-               (url "https://github.com/mhayashi1120/Emacs-wgrep")
-               (commit commit)))
-         (file-name (string-append name "-" version "-checkout"))
-         (sha256
-          (base32
-           "057p99hq0r6z1k8sl15w3sxrqvlv0g9wp39zy1pqhccv2mn3g2d6"))))
-      (build-system emacs-build-system)
-      (propagated-inputs
-       `(("emacs-wgrep" ,emacs-wgrep)))
-      (home-page
-       "https://github.com/mhayashi1120/Emacs-wgrep")
-      (synopsis
-       "Writable helm-grep-mode buffer and apply the changes to files")
-      (description
-       "@code{wgrep-helm} allows you to edit a @code{helm-grep-mode} buffer and
-apply those changes to the file buffer.")
-      (license license:gpl3+))))
 
 (define-public emacs-mu4e-conversation
-  (let ((commit "b60d6bd27d7220c3dd041ff2a090e29f2166a319"))
+  (let ((commit "223cc66e99c7665326e3d991d6d383cb0d7512bb"))
     (package
       (name "emacs-mu4e-conversation")
-      (version (git-version "20180615" "1" commit))
+      (version (git-version "20180722" "2" commit))
       (source
        (origin
          (method url-fetch)
@@ -11246,7 +11346,7 @@ apply those changes to the file buffer.")
          (file-name (string-append name "-" version "-checkout"))
          (sha256
           (base32
-           "0x8kmi0rmbaaxn5zicm1f9yb8ynxi8074hi2n0rvymlfpxbpn0ma"))))
+           "1ivy7pihhma465hi25p1y45dyi8h52nsm2m0cvizj5sw36jw0n81"))))
       (build-system emacs-build-system)
       (propagated-inputs
        `(("mu" ,mu)))
@@ -11317,3 +11417,205 @@ siblings and friends.  This visual overview can also be used to browse your
 entries.  You can think of entries as nodes in a mind map, or pages in a
 wiki.")
     (license license:expat)))
+
+(define-public emacs-recent-addresses
+  (let ((commit "d9da58db542089a1ceb5ef29e420dbfbc4a36373")
+        (revision "0"))
+    (package
+      (name "emacs-recent-addresses")
+      (home-page "http://nschum.de/src/emacs/recent-addresses/")
+      (version (git-version "0.1" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/nschum/recent-addresses.el")
+                      (commit commit)))
+                (sha256
+                 (base32
+                  "175rvcwmkb5z7ss7q2y5178mvdvp5bhn39irz80qinlvaz8fm4nk"))
+                (file-name (git-file-name name version))))
+      (build-system emacs-build-system)
+      (synopsis "Record recently-used email addressed and auto-complete them")
+      (description
+       "@code{recent-addresses} is an Emacs allows you to quickly look up
+previously used email addresses.  It can be used alongside the Gnus email
+client.")
+      (license license:gpl2+))))
+
+(define-public emacs-fold-dwim
+  (let ((commit "c46f4bb2ce91b4e307136320e72c28dd50b6cd8b")
+        (revision "0"))
+    (package
+      (name "emacs-fold-dwim")
+      (version (git-version "1.2" revision commit))
+      (home-page "https://github.com/emacsattic/fold-dwim")
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference (url home-page) (commit commit)))
+                (sha256
+                 (base32
+                  "1yz1wis31asw6xa5maliyd1ck2q02xnnh7dc6swgj9cb4wi7k6i1"))
+                (file-name (git-file-name name version))))
+      (build-system emacs-build-system)
+      (synopsis "Unified user interface for Emacs folding modes")
+      (description
+       "DWIM stands for \"do what I mean\", as in the idea that one keystroke
+can do different things depending on the context.  In this package, it means
+that, if the cursor is in a currently hidden folded construction, we want to
+show it; if it's not, we want to hide whatever fold the cursor is in.")
+      (license license:gpl2+))))
+
+(define-public emacs-markup-faces
+  (package
+    (name "emacs-markup-faces")
+    (version "1.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://stable.melpa.org/packages/markup-faces-"
+                           version ".el"))
+       (sha256
+        (base32
+         "124dxbaa25fwxnpwsygpz7pw6da6dnnw7y2lic3jf8rgz7lw4v32"))))
+    (build-system emacs-build-system)
+    (home-page "https://github.com/sensorflo/markup-faces")
+    (synopsis "Collection of Emacs faces for markup language modes")
+    (description "emacs-markup-faces is like font-lock-faces, but tailored for
+markup languages instead programming languages.  The sub group markup-faces-text
+is also intended for 'text viewing modes' such as info or (wo)man.  This gives a
+common look and feel, or let's say theme, across different markup language modes
+and 'text viewing modes' respectively.")
+    (license license:gpl3+)))
+
+(define-public emacs-adoc-mode
+  (package
+    (name "emacs-adoc-mode")
+    (version "0.6.6")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://stable.melpa.org/packages/adoc-mode-"
+                           version ".el"))
+       (sha256
+        (base32
+         "1c6hrgxxsnl2c19rgjykpm7r4xg9lp6bmk5z6bi7g8pqlrgwffcy"))))
+    (build-system emacs-build-system)
+    (propagated-inputs
+     `(("emacs-markup-faces" ,emacs-markup-faces)))
+    (home-page "https://github.com/sensorflo/adoc-mode/wiki")
+    (synopsis "AsciiDoc mode for Emacs")
+    (description "This package provides an Emacs major mode for editing AsciiDoc
+files.  It focuses on highlighting the document to improve readability.")
+    (license license:gpl2+)))
+
+(define-public emacs-rust-mode
+  (let ((commit
+         ;; Last release is old (2016), use more recent commit to get bug
+         ;; fixes.
+         "64b4a2450e4d4c47f6307851c9b2598cd2254d68")
+        (revision "0"))
+    (package
+      (name "emacs-rust-mode")
+      (version (git-version "0.3.0" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri
+                 (git-reference
+                  (url "https://github.com/rust-lang/rust-mode")
+                  (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "0pbz36lljgb7bdgx3h3g0pq1nss1kvn8mhk1l3mknsmynd6w4nd8"))))
+      (build-system emacs-build-system)
+      (arguments
+       `(#:phases
+         (modify-phases %standard-phases
+           (replace 'check
+             (lambda _
+               (invoke "sh" "run_rust_emacs_tests.sh"))))))
+      (home-page "https://github.com/rust-lang/rust-mode")
+      (synopsis "Major Emacs mode for editing Rust source code")
+      (description "This package provides a major Emacs mode for editing Rust
+source code.")
+      (license (list license:expat
+                     license:asl2.0)))))
+
+(define-public emacs-ztree
+  (let ((commit "c54425a094353ec40a8179f9eab3596f76c6cf94"))
+    (package
+      (name "emacs-ztree")
+      (version (git-version "1.0.5" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/fourier/ztree")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "0j8fpxds8m1zi04nrs8vv21091abvh4n8ab76f1sgdxnp4l5cfb0"))))
+      (build-system emacs-build-system)
+      (home-page "https://github.com/fourier/ztree")
+      (synopsis "Directory tree comparison mode for Emacs")
+      (description "Ztree is a project dedicated to implementation of several
+text-tree applications inside GNU Emacs.  It consists of 2 subprojects:
+@command{ztree-diff} and @command{ztree-dir} (the basis of
+@command{ztree-diff}).")
+      (license license:gpl3))))
+
+(define-public emacs-helm-org-contacts
+  (let ((commit "0af703bd9a43032b89fdf5559673151d1ac2fffc"))
+    (package
+      (name "emacs-helm-org-contacts")
+      (version (git-version "20180707" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/tmalsburg/helm-org-contacts")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "1cl7cm2ic9pg4vc9cdh84vzjj1x2lpd5ymimiva8h4l17kiphk4s"))))
+      (build-system emacs-build-system)
+      (propagated-inputs
+       `(("emacs-dash" ,emacs-dash)
+         ("emacs-helm" ,emacs-helm)
+         ("emacs-s" ,emacs-s)))
+      (home-page "https://github.com/tmalsburg/helm-org-contacts")
+      (synopsis "Helm source for org-contacts")
+      (description "This Helm source can be used to search contacts stored in
+org-contacts format.  There are actions for inserting postal addresses, email
+addresses, and phone numbers in the buffer where @command{helm-org-contacts}
+was called.")
+      (license license:gpl3))))
+
+(define-public emacs-dired-du
+  (package
+    (name "emacs-dired-du")
+    (version "0.5")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://elpa.gnu.org/packages/dired-du-"
+             version ".tar"))
+       (sha256
+        (base32
+         "09yj37p2fa5f81fqrzwghjkyy2ydsf4rbkfwpn2yyvzd5nd97bpl"))))
+    (build-system emacs-build-system)
+    (home-page "http://elpa.gnu.org/packages/dired-du.html")
+    (synopsis "Dired with recursive directory sizes")
+    (description
+     "Display the recursive size of directories in Dired.
+This file defines a minor mode @command{dired-du-mode} to show the recursive
+size of directories in Dired buffers.  If @command{du} program is available,
+then the directory sizes are obtained with it.  Otherwise, the directory sizes
+are obtained with Lisp.  The former is faster and provide a more precise
+value.  For directories where the user doesn't have read permission, the
+recursive size is not obtained.  Once this mode is enabled, every new Dired
+buffer displays recursive dir sizes.")
+    (license license:gpl3+)))

gnu/packages/embedded.scm

@@ -1008,7 +1008,12 @@ SPI, I2C, JTAG.")
                             "loadtools/defpath.c"
                             "loadtools/Makefile"
                             "miscutil/c139explore"
-                            "miscutil/pirexplore")
+                            "miscutil/pirexplore"
+                            "ffstools/tiffs-wrappers/installpath.c"
+                            "rvinterf/rvtat/launchrvif.c"
+                            "rvinterf/etmsync/launchrvif.c"
+                            "rvinterf/libasync/launchrvif.c"
+                            "uptools/atcmd/atinterf.c")
                (("/opt/freecalypso/loadtools")
                 (string-append (assoc-ref outputs "out") "/lib/freecalypso/loadtools"))
                (("/opt/freecalypso")
@@ -1092,6 +1097,10 @@ feeding melodies to be played to it.
 that can be issued through the RVTMUX (debug trace) serial channel.
 This program is our test mode shell for sending Test Mode commands to targets
 and displaying decoded target responses.
+@item fcup-smsend Send a short message via SMS
+@item fcup-smsendmult Send multiple short messages via SMS in one go
+@item fcup-smsendpdu Send multiple short messages given in PDU format via SMS
+@item sms-pdu-decode Decode PDU format messages
 @end enumerate")
     (home-page "https://www.freecalypso.org/")
     (license license:public-domain)))

gnu/packages/erlang.scm

@@ -3,6 +3,7 @@
 ;;; Copyright © 2016, 2017 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2016, 2017 Pjotr Prins <pjotr.guix@thebird.nl>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright (C) 2018 Nils Gillmann <ng0@n0.is>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -37,7 +38,7 @@
 (define-public erlang
   (package
     (name "erlang")
-    (version "20.2.3")
+    (version "21.0")
     (source (origin
               (method url-fetch)
               ;; The tarball from http://erlang.org/download contains many
@@ -48,7 +49,7 @@
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "0s9g4ijdbqq21k4cqggz074d3fiimah942qisv2kgizhlivpw2nm"))
+                "0gv43lra4870xns8b0yjzbq78afzvz9gk6y3q3fa4y4sqcrqwbas"))
               (patches (search-patches "erlang-man-path.patch"))))
     (build-system gnu-build-system)
     (native-inputs
@@ -64,7 +65,7 @@
                                (version-major+minor version) ".tar.gz"))
            (sha256
             (base32
-             "1pyb8wbk7znsyni8d1k4dj1m01lr191dcrrzisli1z27ks7hh3lm"))))))
+             "0cgv23q0215f6lvmhj4w9skx5m29khjs9mb890635s3yp520xgqh"))))))
     (inputs
      `(("ncurses" ,ncurses)
        ("openssl" ,openssl)

gnu/packages/finance.scm

@@ -39,6 +39,7 @@
   #:use-module (gnu packages base)
   #:use-module (gnu packages boost)
   #:use-module (gnu packages check)
+  #:use-module (gnu packages crypto)
   #:use-module (gnu packages databases)
   #:use-module (gnu packages documentation)
   #:use-module (gnu packages dns)
@@ -51,6 +52,7 @@
   #:use-module (gnu packages libusb)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages multiprecision)
+  #:use-module (gnu packages networking)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages protobuf)
   #:use-module (gnu packages python)
@@ -69,7 +71,7 @@
 (define-public bitcoin-core
   (package
     (name "bitcoin-core")
-    (version "0.15.1")
+    (version "0.16.1")
     (source (origin
              (method url-fetch)
              (uri
@@ -77,7 +79,7 @@
                              version "/bitcoin-" version ".tar.gz"))
              (sha256
               (base32
-               "1d22fgwdcn343kd95lh389hj417zwbmnhi29cij8n7wc0nz2vpil"))))
+               "1zkqp93yircd3pbxczxfnibkpq0sgcv5r7wg6d196b9pwgr9zd39"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)
@@ -329,6 +331,37 @@ generation from a seed.  Your secret keys are encrypted and are never sent to
 other machines/servers.  Electrum does not download the Bitcoin blockchain.")
     (license license:expat)))
 
+(define-public electron-cash
+  (package
+    (inherit electrum)
+    (name "electron-cash")
+    (version "3.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://electroncash.org/downloads/"
+                           version
+                           "/win-linux/ElectronCash-"
+                           version
+                           ".tar.gz"))
+       (sha256
+        (base32
+         "1x487hyacdm1qhik1mhfimr4jwcwz7sgsbkh11awrb6j19sxdxym"))
+       (modules '((guix build utils)))
+       (snippet
+        '(begin
+           ;; Delete the bundled dependencies.
+           (delete-file-recursively "packages")
+           #t))))
+    (home-page "https://electroncash.org/")
+    (synopsis "Bitcoin Cash wallet")
+    (description
+     "Electroncash is a lightweight Bitcoin Cash client, based on a client-server
+protocol.  It supports Simple Payment Verification (SPV) and deterministic key
+generation from a seed.  Your secret keys are encrypted and are never sent to
+other machines/servers.  Electroncash does not download the Bitcoin Cash blockchain.")
+    (license license:expat)))
+
 (define-public monero
   ;; This package bundles easylogging++ and lmdb.
   ;; The bundled easylogging++ is modified, and the changes will not be upstreamed.
@@ -336,25 +369,18 @@ other machines/servers.  Electrum does not download the Bitcoin blockchain.")
   ;; the system's dynamically linked library.
   (package
     (name "monero")
-    (version "0.11.1.0")
+    (version "0.12.3.0")
     (source
      (origin
-       (method url-fetch)
+       (method git-fetch)
-       (uri (string-append "https://github.com/monero-project/monero/archive/v"
+       (uri (git-reference
-                           version ".tar.gz"))
+             (url "https://github.com/monero-project/monero")
+             (commit (string-append "v" version))))
        (file-name (string-append name "-" version ".tar.gz"))
-       (modules '((guix build utils)))
+       (patches (search-patches "monero-use-system-miniupnpc.patch"))
-       (snippet
-        '(begin
-           ;; Delete bundled dependencies.
-           (for-each
-            delete-file-recursively
-            '("external/miniupnpc" "external/rapidjson"
-              "external/unbound"))
-           #t))
        (sha256
         (base32
-         "16shd834025jyzy68h3gag1sz8vbk875hy4j97hrki8pacz8vd5m"))))
+         "14db9kgjm2ha93c2x5fjdw01xaqshn756qr3x2cnzyyjh7caz5qd"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("doxygen" ,doxygen)
@@ -364,15 +390,19 @@ other machines/servers.  Electrum does not download the Bitcoin blockchain.")
     (inputs
      `(("bind" ,isc-bind)
        ("boost" ,boost)
+       ("zeromq" ,zeromq)
+       ("cppzmq" ,cppzmq)
        ("expat" ,expat)
+       ("libsodium" ,libsodium)
        ("libunwind" ,libunwind)
        ("lmdb" ,lmdb)
-       ("miniupnpc" ,miniupnpc)
+       ("miniupnpc" ,monero-miniupnpc)
        ("openssl" ,openssl)
        ("rapidjson" ,rapidjson)
        ("unbound" ,unbound)))
     (arguments
      `(#:out-of-source? #t
+       #:build-type "release"
        #:configure-flags '("-DBUILD_TESTS=ON"
                            ,@(if (string=? "aarch64-linux" (%current-system))
                                  '("-DARCH=armv8-a")
@@ -400,9 +430,8 @@ other machines/servers.  Electrum does not download the Bitcoin blockchain.")
              #t))
          (replace 'check
            (lambda _
-             (zero?
+             (invoke "make" "ARGS=-E 'unit_tests|libwallet_api_tests'"
-              (system* "make" "ARGS=-E 'unit_tests|libwallet_api_tests'"
+                     "test")))
-                       "test"))))
          ;; The excluded unit tests need network access
          (add-after 'check 'unit-tests
            (lambda _
@@ -415,10 +444,9 @@ other machines/servers.  Electrum does not download the Bitcoin blockchain.")
                        "DNSResolver.DNSSECFailure"
                        "DNSResolver.GetTXTRecord")
                      ":")))
-               (zero?
+               (invoke "tests/unit_tests/unit_tests"
-                (system* "tests/unit_tests/unit_tests"
                        (string-append "--gtest_filter=-"
-                                        excluded-unit-tests))))))
+                                      excluded-unit-tests)))))
          (add-after 'install 'install-blockchain-import-export
            (lambda* (#:key outputs #:allow-other-keys)
              (let* ((out (assoc-ref outputs "out"))
@@ -432,19 +460,20 @@ other machines/servers.  Electrum does not download the Bitcoin blockchain.")
 Monero command line client and daemon.")
     (license license:bsd-3)))
 
-(define-public monero-core
+(define-public monero-gui
   (package
-    (name "monero-core")
+    (name "monero-gui")
-    (version "0.11.1.0")
+    (version "0.12.2.0")
     (source
      (origin
-       (method url-fetch)
+       (method git-fetch)
-       (uri (string-append "https://github.com/monero-project/monero-core/archive/v"
+       (uri (git-reference
-                           version ".tar.gz"))
+             (url "https://github.com/monero-project/monero-gui")
+             (commit (string-append "v" version))))
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
         (base32
-         "1q7a9kpcjgp74fbplzs2iszdld6gwbfrydyd9in9izhwp100p1rr"))))
+         "1cnrkwh7kp64lnzz1xfmkf1mhsgm5gls292gpqai3jr8jydpkahl"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("doxygen" ,doxygen)
@@ -491,7 +520,7 @@ Monero command line client and daemon.")
              #t))
          (replace 'build
            (lambda _
-             (zero? (system* "./build.sh"))))
+             (invoke "./build.sh")))
          (add-after 'build 'fix-install-path
            (lambda* (#:key outputs #:allow-other-keys)
              (substitute* "build/Makefile"
@@ -508,6 +537,9 @@ Monero command line client and daemon.")
 Monero GUI client.")
     (license license:bsd-3)))
 
+(define-public monero-core
+  (deprecated-package "monero-core" monero-gui))
+
 (define-public python-trezor-agent
   (package
     (name "python-trezor-agent")

gnu/packages/fltk.scm

@@ -4,6 +4,7 @@
 ;;; Copyright © 2015, 2018 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2016 Kei Kebreau <kkebreau@posteo.net>
 ;;; Copyright © 2018 Mark H Weaver <mhw@netris.org>
+;;; Copyright © 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -34,27 +35,27 @@
   #:use-module (guix download)
   #:use-module (guix git-download)
   #:use-module (guix build-system gnu)
-  #:use-module (guix build-system waf))
+  #:use-module (guix build-system waf)
+  #:use-module (srfi srfi-1))
 
 (define-public fltk
   (package
     (name "fltk")
-    (version "1.3.3")
+    (version "1.3.4-2")
     (source
      (origin
       (method url-fetch)
-      (uri (string-append "http://fltk.org/pub/fltk/" version
+      (uri (string-append "http://fltk.org/pub/fltk/"
+                          (first (string-split version #\-))
                           "/fltk-" version "-source.tar.gz"))
       (sha256
        (base32
-        "15qd7lkz5d5ynz70xhxhigpz3wns39v9xcf7ggkl0792syc8sfgq"))
+        "0459rm1gl5x3famiqma7ja7k6hvan8p5l8lgshvqfl4rik0lklr5"))))
-      (patches (search-patches "fltk-shared-lib-defines.patch"
-                               "fltk-xfont-on-demand.patch"))))
    (build-system gnu-build-system)
    (native-inputs
     `(("pkg-config" ,pkg-config)))
    (inputs
-    `(("libjpeg" ,libjpeg-8)     ;jpeg_read_header argument error in libjpeg-9
+    `(("libjpeg" ,libjpeg)
       ("libpng" ,libpng)
       ("libx11" ,libx11)
       ("libxft" ,libxft)
@@ -76,8 +77,7 @@
            ;; Provide -L flags for image libraries when querying fltk-config to
            ;; avoid propagating inputs.
            (lambda* (#:key inputs outputs #:allow-other-keys)
-             (use-modules (srfi srfi-26))
+             (let ((conf (string-append (assoc-ref outputs "out")
-             (let* ((conf (string-append (assoc-ref outputs "out")
                                         "/bin/fltk-config"))
                    (jpeg (assoc-ref inputs "libjpeg"))
                    (png  (assoc-ref inputs "libpng"))

gnu/packages/fonts.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2013, 2014, 2015, 2016 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2013, 2014, 2015, 2016, 2018 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2014, 2017 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2014 Joshua Grant <tadni@riseup.net>
 ;;; Copyright © 2014 Alex Kost <alezost@gmail.com>
@@ -1262,3 +1262,32 @@ Lohit supports the Assamese, Bengali, Devanagari (Hindi, Kashmiri, Konkani,
 Maithili, Marathi, Nepali, Sindhi, Santali, Bodo, Dogri languages), Gujarati,
 Kannada, Malayalam, Manipuri, Oriya, Punjabi, Tamil and Telugu scripts.")
     (license license:silofl1.1)))
+
+(define-public font-blackfoundry-inria
+  (package
+    (name "font-blackfoundry-inria")
+    (version "1.200")
+    (home-page "https://github.com/BlackFoundry/InriaFonts")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url home-page)
+                    (commit (string-append "v" version))))
+              (sha256
+               (base32
+                "06775y99lyh6hj5hzvrx56iybdck8a8xfqkipqd5c4cldg0a9hh8"))
+              (file-name (string-append name "-" version "-checkout"))))
+    ;; XXX: There are .ufo directories (the "source") so in theory we should
+    ;; be able to rebuild TTF and OTF files with FontForge.  Unfortunately a
+    ;; command like:
+    ;;
+    ;;  fontforge -lang=ff -c "Open('InriaSans-Regular.ufo'); Generate('foo.ttf');"
+    ;;
+    ;; segfaults in '_UFOLoadGlyph', which calls out to libpython.  :-/
+    ;; In the meantime we ship the precompiled OTF and TTF files.
+    (build-system font-build-system)
+    (synopsis "Inria Sans and Inria Serif type family")
+    (description
+     "Inria Sans and Inria Serif are the two members of a type family designed
+for Inria, a public research institute in computer science and mathematics.")
+    (license license:silofl1.1)))

gnu/packages/fontutils.scm

@@ -455,17 +455,16 @@ using the above tables.")
 (define-public libspiro
   (package
     (name "libspiro")
-    (version "20071029")
+    (version "0.5.20150702")
     (source
      (origin
       (method url-fetch)
-      (uri (string-append "mirror://sourceforge/libspiro/libspiro/"
+      (uri (string-append "https://github.com/fontforge/libspiro/releases"
-                          version "/libspiro_src-" version ".tar.bz2"))
+                          "/download/" version "/libspiro-dist-" version ".tar.gz"))
       (sha256
        (base32
-        "1kylz8pvwnb85yya150r9i6mhbpzx38f32qy523qg3ylgd9b3zhy"))))
+        "153ckwj6h3wwlsgcppzqj8cymv1927hi8ar8fzpchq5q89cj2kai"))))
     (build-system gnu-build-system)
-    (arguments `(#:tests? #f))          ;no tests
     (synopsis "Clothoid to bezier conversion library")
     (description
      "Raph Levien's Spiro package as a library.  A mechanism for drawing

gnu/packages/freedesktop.scm

@@ -721,19 +721,21 @@ message bus.")
 (define-public accountsservice
   (package
     (name "accountsservice")
-    (version "0.6.43")
+    (version "0.6.50")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://www.freedesktop.org/software/"
                                   name "/" name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1k6n9079001sgcwlkq0bz6mkn4m8y4dwf6hs1qm85swcld5ajfzd"))))
+                "0jn7vg1z4vxnna0hl33hbcb4bb3zpilxc2vyclh24vx4vvsjhn83"))))
     (build-system gnu-build-system)
     (arguments
      '(#:tests? #f ; XXX: tests require DocBook 4.1.2
        #:configure-flags
-       '("--localstatedir=/var")
+       '("--localstatedir=/var"
+         "--disable-systemd"
+         "--enable-elogind")
        #:phases
        (modify-phases %standard-phases
          (add-before
@@ -756,8 +758,9 @@ message bus.")
        ("intltool" ,intltool)
        ("pkg-config" ,pkg-config)))
     (inputs
-     `(("shadow" ,shadow)
+     `(("elogind" ,elogind)
-       ("polkit" ,polkit)))
+       ("polkit" ,polkit)
+       ("shadow" ,shadow)))
     (home-page "https://www.freedesktop.org/wiki/Software/AccountsService/")
     (synopsis "D-Bus interface for user account query and manipulation")
     (description

gnu/packages/game-development.scm

@@ -2,12 +2,12 @@
 ;;; Copyright © 2014 Tomáš Čech <sleep_walker@suse.cz>
 ;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2015, 2018 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2015 Alex Kost <alezost@gmail.com>
+;;; Copyright © 2015, 2018 Alex Kost <alezost@gmail.com>
 ;;; Copyright © 2015, 2016, 2017 David Thompson <davet@gnu.org>
 ;;; Copyright © 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016, 2017 Kei Kebreau <kkebreau@posteo.net>
 ;;; Copyright © 2016, 2018 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2016, 2017 Julian Graham <joolean@gmail.com>
+;;; Copyright © 2016, 2017, 2018 Julian Graham <joolean@gmail.com>
 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2017 Manolis Fragkiskos Ragkousis <manolis837@gmail.com>
 ;;; Copyright © 2017 Peter Mikkelsen <petermikkelsen10@gmail.com>
@@ -74,6 +74,7 @@
   #:use-module (gnu packages python)
   #:use-module (gnu packages qt)
   #:use-module (gnu packages sdl)
+  #:use-module (gnu packages stb)
   #:use-module (gnu packages texinfo)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages video)
@@ -225,14 +226,14 @@ PCM data.")
 (define-public gzochi
   (package
     (name "gzochi")
-    (version "0.11.1")
+    (version "0.12")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://savannah/gzochi/gzochi-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "13j1m92zhxwkaaja3lg5x0h0b28mrrawdzk9d3hd19031akfxwb3"))))
+                "0h8yvk7154kd8zdfa9nqy73blrjq2x19kv305jcnwlmm09vvss59"))))
     (build-system gnu-build-system)
     (arguments
      '(#:phases (modify-phases %standard-phases
@@ -356,14 +357,14 @@ levels.")
 (define-public python-xsge
   (package
     (name "python-xsge")
-    (version "2017.06.09")
+    (version "2018.02.26")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://savannah/xsge/xsge/xsge-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "1vy7c2y7ihvmggs93zgfv2h3049s384wid8a5snzrrba8bhbb89p"))))
+                "0bx93hgf7cgdw2gsygbh59y8vpw37pgsa279rajw3fkdpl8vrc40"))))
     (build-system python-build-system)
     (arguments
      '(#:phases
@@ -372,10 +373,9 @@ levels.")
          ;; system's default flags, "--single-version-externally-managed".
          (replace 'install
            (lambda* (#:key outputs #:allow-other-keys)
-             (zero?
+             (invoke "python" "setup.py" "install"
-              (system* "python" "setup.py" "install"
                      (string-append "--prefix=" (assoc-ref outputs "out"))
-                       "--root=/")))))
+                     "--root=/"))))
        #:tests? #f)) ; no check target
     (propagated-inputs
      `(("python-sge-pygame" ,python-sge-pygame)
@@ -397,7 +397,7 @@ support.")
 (define-public tiled
   (package
     (name "tiled")
-    (version "1.1.5")
+    (version "1.1.6")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/bjorn/tiled/archive/v"
@@ -405,7 +405,7 @@ support.")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "1zrq1nhb50mwqzw3fln6vj49ljddil1v7yby3ahjbcm94s25ll1y"))))
+                "194ciw8688mikndvxivzb8ql5vm405pkwnn4srzm7ymwfc4xygb0"))))
     (build-system gnu-build-system)
     (inputs
      `(("qtbase" ,qtbase)
@@ -424,7 +424,7 @@ support.")
                                (assoc-ref inputs "qttools")
                                "/bin/lrelease\n")))
              (let ((out (assoc-ref outputs "out")))
-               (system* "qmake"
+               (invoke "qmake"
                        (string-append "PREFIX=" out))))))))
     (home-page "http://www.mapeditor.org/")
     (synopsis "Tile map editor")
@@ -440,7 +440,7 @@ clone.")
 (define-public sfml
   (package
     (name "sfml")
-    (version "2.3.2")
+    (version "2.5.0")
     (source (origin
               (method url-fetch)
               ;; Do not fetch the archives from
@@ -451,24 +451,37 @@ clone.")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "0k2fl5xk3ni2q8bsxl0551inx26ww3w6cp6hssvww0wfjdjcirsm"))))
+                "1x3yvhdrln5b6h4g5r4mds76gq8zsxw6icxqpwqkmxsqcq5yviab"))
+              (modules '((guix build utils)))
+              (snippet
+               '(begin
+                  ;; Ensure system libraries are used.
+                  (delete-file-recursively "extlibs")
+                  #t))))
     (build-system cmake-build-system)
     (arguments
      '(#:configure-flags
-       (list "-DSFML_INSTALL_PKGCONFIG_FILES=TRUE")
+       (list "-DSFML_INSTALL_PKGCONFIG_FILES=TRUE"
+             "-DSFML_OS_PKGCONFIG_DIR=lib/pkgconfig")
        #:tests? #f)) ; no tests
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
     (inputs
      `(("mesa" ,mesa)
        ("glew" ,glew)
-       ("flac" ,flac)
-       ("libvorbis" ,libvorbis)
        ("libx11" ,libx11)
        ("xcb-util-image" ,xcb-util-image)
        ("libxrandr" ,libxrandr)
        ("eudev" ,eudev)
-       ("freetype" ,freetype)
        ("libjpeg" ,libjpeg)
        ("libsndfile" ,libsndfile)
+       ("stb-image" ,stb-image)
+       ("stb-image-write" ,stb-image-write)))
+    (propagated-inputs
+     ;; In Requires.private of pkg-config files.
+     `(("flac" ,flac)
+       ("freetype" ,freetype)
+       ("libvorbis" ,libvorbis)
        ("openal" ,openal)))
     (home-page "https://www.sfml-dev.org")
     (synopsis "Simple and Fast Multimedia Library")
@@ -518,7 +531,7 @@ sounds from presets such as \"explosion\" or \"powerup\".")
 (define-public physfs
   (package
     (name "physfs")
-    (version "2.0.3")
+    (version "3.0.1")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -527,10 +540,18 @@ sounds from presets such as \"explosion\" or \"powerup\".")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "0sbbyqzqhyf0g68fcvvv20n3928j0x6ik1njmhn1yigvq2bj11na"))))
+                "1wgj2zqpnfbnyyi1i7bq5pshcc9n5cvwlpzp8im67nb8662ryyxp"))))
     (build-system cmake-build-system)
     (arguments
-     '(#:tests? #f))                    ; no check target
+     '(#:tests? #f                      ; no check target
+       #:phases (modify-phases %standard-phases
+                  (add-after 'unpack 'patch-CMakeLists.txt
+                    (lambda _
+                      (substitute* "CMakeLists.txt"
+                        ;; XXX: For some reason CMakeLists.txt disables
+                        ;; RUNPATH manipulation when the compiler is GCC.
+                        (("CMAKE_COMPILER_IS_GNUCC") "FALSE"))
+                      #t)))))
     (inputs
      `(("zlib" ,zlib)))
     (native-inputs
@@ -623,18 +644,15 @@ etc.")
 (define-public allegro
   (package
     (name "allegro")
-    (version "5.2.2.0")
+    (version "5.2.4.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/liballeg/allegro5/releases"
                                   "/download/" version "/allegro-"
-                                  (if (equal? "0" (string-take-right version 1))
+                                  version ".tar.gz"))
-                                    (string-drop-right version 2)
-                                    version)
-                                  ".tar.gz"))
               (sha256
                (base32
-                "1z4lrrlmn471wb7vzbd9iw7g379vj0k964vy1s64hcvv5bhvk1g2"))))
+                "1w9a5yqi5q03b2qvmx5ff90paz0xbr9cy7i7f0xiqa65ava66q9l"))))
     (build-system cmake-build-system)
     (arguments `(#:tests? #f)) ; there are no tests
     (inputs
@@ -1019,18 +1037,23 @@ of use.")
     (license license:expat)))
 
 (define-public openmw
+  ;; XXX The current version does not support qt 5.11, but the upcoming
+  ;; version (0.44) will do.
+  (let ((commit "5bc073603e8c7887e015a0ef41b4cefd6e688aaf")
+        (revision "1"))
   (package
     (name "openmw")
-    (version "0.43.0")
+    (version (git-version "0.43" revision commit))
     (source
      (origin
-       (method url-fetch)
+       (method git-fetch)
-       (uri
+       (uri (git-reference
-        (string-append "https://github.com/OpenMW/openmw/archive/"
+             (url "https://gitlab.com/OpenMW/openmw.git")
-                       name "-" version ".tar.gz"))
+             (commit commit)))
+       (file-name (string-append name "-" version "-checkout"))
        (sha256
         (base32
-         "11phjx7b3mv4n295xgq25lkcwq0mgr35i5k05hf1h77y6n6jbw64"))))
+         "1sp4n3f1syvv0iz7n72wh226fyc0jh98cg8bvs574jvvqx6qn851"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f                      ; No test target
@@ -1057,7 +1080,7 @@ the 2002 open-world RPG Morrowind.  The engine comes with its own editor,
 called OpenMW-CS which allows the user to edit or create their own original
 games.")
     (home-page "https://openmw.org")
-    (license license:gpl3)))
+    (license license:gpl3))))
 
 (define-public godot
   (package

gnu/packages/games.scm

@@ -87,6 +87,7 @@
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages guile)
   #:use-module (gnu packages imagemagick)
+  #:use-module (gnu packages less)
   #:use-module (gnu packages libcanberra)
   #:use-module (gnu packages libedit)
   #:use-module (gnu packages libunwind)
@@ -665,6 +666,131 @@ removed lines to all opponents.  There is also a Demo mode in which you can
 watch your CPU playing while enjoying a cup of tea!")
     (license license:gpl2+)))
 
+(define-public nethack
+  (package
+    (name "nethack")
+    (version "3.6.1")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append "https://www.nethack.org/download/"
+                            version "/" name "-361-src.tgz"))
+        (sha256
+          (base32 "1dha0ijvxhx7c9hr0452h93x81iiqsll8bc9msdnp7xdqcfbz32b"))))
+    (inputs
+      `(("ncurses" ,ncurses)
+        ("bison" ,bison)
+        ("flex" ,flex)
+        ("less" ,less)))
+    (build-system gnu-build-system)
+    (arguments
+      '(#:make-flags
+        `(,(string-append "PREFIX=" (assoc-ref %outputs "out")))
+        #:phases
+        (modify-phases %standard-phases
+          (add-before 'configure 'patch-paths
+            (lambda _
+              (substitute* "sys/unix/nethack.sh"
+                (("^ *cd .*$") ""))
+              (substitute* "sys/unix/Makefile.utl"
+                (("^YACC *=.*$") "YACC = bison -y\n")
+                (("^LEX *=.*$") "LEX = flex\n")
+                (("^# CC = gcc") "CC = gcc"))
+              (substitute* "sys/unix/hints/linux"
+                (("/bin/gzip") (string-append
+                                 (assoc-ref %build-inputs "gzip")
+                                 "/bin/gzip"))
+                (("^WINTTYLIB=.*") "WINTTYLIB=-lncurses"))
+              (substitute* "include/config.h"
+                (("^.*define CHDIR.*$") "")
+                (("^/\\* *#*define *REPRODUCIBLE_BUILD *\\*/")
+                 ;; Honor SOURCE_DATE_EPOCH.
+                 "#define REPRODUCIBLE_BUILD"))
+
+              ;; Note: 'makedefs' rejects and ignores dates that are too old
+              ;; or too new, so we must choose something reasonable here.
+              (setenv "SOURCE_DATE_EPOCH" "1531865062")
+
+              (substitute* "sys/unix/Makefile.src"
+                 (("^# CC = gcc") "CC = gcc"))
+              #t))
+          (replace 'configure
+            (lambda _
+              (let ((bash (string-append
+                            (assoc-ref %build-inputs "bash")
+                            "/bin/bash")))
+                (with-directory-excursion "sys/unix"
+                  (substitute* "setup.sh" (("/bin/sh") bash))
+                  (invoke bash "setup.sh" "hints/linux"))
+                #t)))
+          (add-after 'install 'fixup-paths
+            (lambda _
+              (let* ((output (assoc-ref %outputs "out"))
+                     (nethack-script (string-append output "/bin/nethack")))
+                (mkdir-p (string-append output "/games/lib/nethackuserdir"))
+                (for-each
+                  (lambda (file)
+                    (rename-file
+                      (string-append output "/games/lib/nethackdir/" file)
+                      (string-append output "/games/lib/nethackuserdir/"
+                                     file)))
+                  '("xlogfile" "logfile" "perm" "record" "save"))
+                (mkdir-p (string-append output "/bin"))
+                (call-with-output-file nethack-script
+                  (lambda (port)
+                    (format port "#!~a/bin/sh
+PATH=~a:$PATH
+if [ ! -d ~~/.config/nethack ]; then
+  mkdir -p ~~/.config/nethack
+  cp -r ~a/games/lib/nethackuserdir/* ~~/.config/nethack
+  chmod -R +w ~~/.config/nethack
+fi
+
+RUNDIR=$(mktemp -d)
+
+cleanup() {
+  rm -rf $RUNDIR
+}
+trap cleanup EXIT
+
+cd $RUNDIR
+for i in ~~/.config/nethack/*; do
+  ln -s $i $(basename $i)
+done
+for i in ~a/games/lib/nethackdir/*; do
+  ln -s $i $(basename $i)
+done
+~a/games/nethack"
+                      (assoc-ref %build-inputs "bash")
+                      (list->search-path-as-string
+                        (list
+                          (string-append
+                            (assoc-ref %build-inputs "coreutils") "/bin")
+                          (string-append
+                            (assoc-ref %build-inputs "less") "/bin"))
+                        ":")
+                      output
+                      output
+                      output)))
+                (chmod nethack-script #o555)
+                #t)))
+          (delete 'check))))
+    (home-page "https://nethack.org")
+    (synopsis "Classic dungeon crawl game")
+    (description "NetHack is a single player dungeon exploration game that runs
+on a wide variety of computer systems, with a variety of graphical and text
+interfaces all using the same game engine.  Unlike many other Dungeons &
+Dragons-inspired games, the emphasis in NetHack is on discovering the detail of
+the dungeon and not simply killing everything in sight - in fact, killing
+everything in sight is a good way to die quickly.  Each game presents a
+different landscape - the random number generator provides an essentially
+unlimited number of variations of the dungeon and its denizens to be discovered
+by the player in one of a number of characters: you can pick your race, your
+role, and your gender.")
+    (license
+      (license:fsdg-compatible
+        "https://nethack.org/common/license.html"))))
+
 (define-public prboom-plus
   (package
    (name "prboom-plus")
@@ -955,15 +1081,16 @@ that beneath its ruins lay buried an ancient evil.")
 (define-public angband
   (package
     (name "angband")
-    (version "4.0.5")
+    (version "4.1.2")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "http://rephial.org/downloads/4.0/"
+       (uri (string-append "http://rephial.org/downloads/"
-                           "angband-" version ".tar.gz"))
+                           (version-major+minor version)
+                           "/angband-" version ".tar.gz"))
        (sha256
         (base32
-         "0lpq2kms7hp421vrasx2bkkn9w08kr581ldwik3v0hlq6h7rlxhd"))
+         "0ahfzb66ihxvkxcbhcib816x40sdsp26b3ravr1xqp44w1whkg1h"))
        (modules '((guix build utils)))
        (snippet
         ;; So, some of the sounds/graphics/tilesets are under different
@@ -987,11 +1114,11 @@ that beneath its ruins lay buried an ancient evil.")
        #:configure-flags (list (string-append "--bindir=" %output "/bin"))
        #:phases
        (modify-phases %standard-phases
-         (add-after 'unpack 'autogen.sh
+         (replace 'bootstrap
            (lambda _
              (substitute* "acinclude.m4"
                (("ncursesw5-config") "ncursesw6-config"))
-             (zero? (system* "sh" "autogen.sh")))))))
+             (invoke "sh" "autogen.sh"))))))
     (native-inputs
      `(("autoconf" ,autoconf)
        ("automake" ,automake)))
@@ -1448,7 +1575,7 @@ match, cannon keep, and grave-itation pit.")
 (define minetest-data
   (package
     (name "minetest-data")
-    (version "0.4.16")
+    (version "0.4.17")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1457,7 +1584,7 @@ match, cannon keep, and grave-itation pit.")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "0nibpm600rbv9dg1zgcsl5grlbqx0b5l6cg1lp6sqkwvjialb4ga"))))
+                "0pa9skjwbq27aky6dgr7g3mb0a7c5rpa6xmz2qh0nm618z5hgazh"))))
     (build-system trivial-build-system)
     (native-inputs
      `(("source" ,source)
@@ -1490,7 +1617,7 @@ match, cannon keep, and grave-itation pit.")
 (define-public minetest
   (package
     (name "minetest")
-    (version "0.4.16")
+    (version "0.4.17")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1499,7 +1626,7 @@ match, cannon keep, and grave-itation pit.")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "0mbnf1ma4gsw9ah68ply04059xkfx5psdxwalxp78sgmx4ypkwqf"))))
+                "0wpbad5bssbbgspgdcq3hhq4bhckrj53nhymsz34d8g01j0csr46"))))
     (build-system cmake-build-system)
     (arguments
      '(#:configure-flags
@@ -1830,7 +1957,7 @@ falling, themeable graphics and sounds, and replays.")
 (define-public wesnoth
   (package
     (name "wesnoth")
-    (version "1.14.3")
+    (version "1.14.4")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/wesnoth/wesnoth-"
@@ -1839,7 +1966,7 @@ falling, themeable graphics and sounds, and replays.")
                                   name "-" version ".tar.bz2"))
               (sha256
                (base32
-                "06648041nr77sgzr7jpmcn37cma3hp41qynp50xzddx28l17zwg9"))))
+                "1hw1ap8xxpdwyx1sf8fm1g75p6724y3hwb4kpvyqbsq7bwfwsb9i"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f)) ; no check target
@@ -3345,7 +3472,7 @@ throwing people around in pseudo-randomly generated buildings.")
 (define-public hyperrogue
   (package
     (name "hyperrogue")
-    (version "10.0g")
+    (version "10.4j")
     ;; When updating this package, be sure to update the "hyperrogue-data"
     ;; origin in native-inputs.
     (source (origin
@@ -3356,7 +3483,7 @@ throwing people around in pseudo-randomly generated buildings.")
                     "-src.tgz"))
               (sha256
                (base32
-                "0f68pcnsgl406dhm91ckn3f364bar9m9i5njp9vrmvhvv9p2icy0"))))
+                "0909p4xvbi1c2jc5rdgrf8b1c60fmsaapabsi6yyglh5znkf0k27"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ; no check target
@@ -3368,7 +3495,6 @@ throwing people around in pseudo-randomly generated buildings.")
              (setenv "CPATH"
                      (string-append (assoc-ref inputs "sdl-union")
                                     "/include/SDL"))))
-         ;; Fix font and music paths.
          (replace 'configure
            (lambda* (#:key inputs outputs #:allow-other-keys)
              (let* ((out (assoc-ref outputs "out"))
@@ -3378,17 +3504,18 @@ throwing people around in pseudo-randomly generated buildings.")
                                  "/share/fonts/truetype"))
                     (dejavu-font "DejaVuSans-Bold.ttf")
                     (music-file "hyperrogue-music.txt"))
+               ;; Fix font and music paths.
                (substitute* "basegraph.cpp"
                  ((dejavu-font)
                   (string-append dejavu-dir "/" dejavu-font)))
-               (substitute* "sound.cpp"
-                 (((string-append "\\./" music-file))
-                  (string-append share-dir "/" music-file))
-                 (("sounds/")
-                  (string-append share-dir "/sounds/")))
                (substitute* music-file
                  (("\\*/")
                   (string-append share-dir "/sounds/"))))
+             ;; Fix Makefile.
+             (substitute* "Makefile"
+               (("g\\+\\+ langen.cpp")
+                "g++ langen.cpp ${CXXFLAGS}")
+               (("savepng.c") "savepng.cpp"))
              #t))
          (replace 'install
            (lambda* (#:key inputs outputs #:allow-other-keys)
@@ -3405,21 +3532,18 @@ throwing people around in pseudo-randomly generated buildings.")
                     (out (assoc-ref outputs "out"))
                     (sounds (string-append out "/share/hyperrogue/sounds"))
                     (unzip (string-append (assoc-ref inputs "unzip") "/bin/unzip")))
-               (and
                ;; Extract media license information into sounds directory.
-                (zero?
+               (invoke unzip "-j" data
-                 (system* unzip "-j" data
                        (string-append
                         "hyperrogue"
                         (string-join (string-split ,version #\.) "")
-                           "/sounds/credits.txt") "-d" sounds))
+                        "/sounds/credits.txt") "-d" sounds)
                ;; Extract sounds and music into sounds directory.
-                (zero?
+               (invoke "unzip" "-j" data
-                 (system* "unzip" "-j" data
                        (string-append
                         "hyperrogue"
                         (string-join (string-split ,version #\.) "")
-                           "/*.ogg") "-d" sounds)))))))))
+                        "/*.ogg") "-d" sounds)))))))
     (native-inputs
      `(("hyperrogue-data"
         ,(origin
@@ -3431,7 +3555,7 @@ throwing people around in pseudo-randomly generated buildings.")
              "-win.zip"))
            (sha256
             (base32
-             "0bnp077qvlmxjlz1jjd6kpghlv9flxc19ac1xq3m3wyq1w9p3pab"))))
+             "0w61iv2rn93hi0q3hxyyyf9xcr8vi9zd7fjvpz5adpgf94jm3zsc"))))
        ("unzip" ,unzip)))
     (inputs
      `(("font-dejavu" ,font-dejavu)
@@ -3497,7 +3621,7 @@ for Un*x systems with X11.")
 (define-public freeciv
   (package
    (name "freeciv")
-   (version "2.5.7")
+   (version "2.6.0")
    (source
     (origin
      (method url-fetch)
@@ -3510,7 +3634,7 @@ for Un*x systems with X11.")
                   "/freeciv-" version ".tar.bz2")))
      (sha256
       (base32
-       "1lmydnnqraa947l7gdz6xgm0bgks1ywsivp9h4v8jr3avcv6gqzz"))))
+       "16f9wsnn7073s6chzbm3819swd0iw019p9nrzr3diiynk28kj83w"))))
    (build-system gnu-build-system)
    (inputs
     `(("curl" ,curl)

gnu/packages/gcc.scm

@@ -519,14 +519,14 @@ It also includes runtime support libraries for these languages.")))
 (define-public gcc-8
   (package
     (inherit gcc-7)
-    (version "8.1.0")
+    (version "8.2.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnu/gcc/gcc-"
                                   version "/gcc-" version ".tar.xz"))
               (sha256
                (base32
-                "0lxil8x0jjx7zbf90cy1rli650akaa6hpk8wk8s62vk2jbwnc60x"))
+                "10007smilswiiv2ymazr3b6x2i933c0ycxrr529zh4r6p823qv0r"))
               (patches (search-patches "gcc-8-strmov-store-file-names.patch"
                                        "gcc-5.0-libvtv-runpath.patch"))))))
 

gnu/packages/geo.scm

@@ -180,7 +180,7 @@ and driving.")
     (inputs
      `(("cairo" ,cairo)
        ("libpng" ,libpng)
-       ("libjepeg-turbo" ,libjpeg-turbo)
+       ("libjpeg-turbo" ,libjpeg-turbo)
        ("libtiff" ,libtiff)
        ("libgeotiff" ,libgeotiff)
        ("proj.4" ,proj.4)

gnu/packages/ghostscript.scm

@@ -132,6 +132,7 @@ printing, and psresize, for adjusting page sizes.")
 (define-public ghostscript
   (package
     (name "ghostscript")
+    (replacement ghostscript/fixed)
     (version "9.23")
     (source
       (origin
@@ -250,6 +251,16 @@ output file formats and printers.")
     (home-page "https://www.ghostscript.com/")
     (license license:agpl3+)))
 
+(define-public ghostscript/fixed
+  (hidden-package
+    (package
+      (inherit ghostscript)
+      (source
+        (origin
+          (inherit (package-source ghostscript))
+          (patches (append (origin-patches (package-source ghostscript))
+                           (search-patches "ghostscript-CVE-2018-10194.patch"))))))))
+
 (define-public ghostscript/x
   (package/inherit ghostscript
     (name (string-append (package-name ghostscript) "-with-x"))

gnu/packages/gimp.scm

@@ -1,7 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2014, 2015 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2016, 2018 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018 Leo Famulari <leo@famulari.name>
 ;;;
@@ -100,7 +100,7 @@ provided, as well as a framework to add new color models and data types.")
      `(("cairo" ,cairo)
        ("pango" ,pango)
        ("libpng" ,libpng)
-       ("libjpeg" ,libjpeg-8)))
+       ("libjpeg" ,libjpeg)))
     (native-inputs
      `(("pkg-config" ,pkg-config)
        ("glib" ,glib "bin")             ; for gtester
@@ -154,7 +154,7 @@ buffers.")
        ("glib" ,glib)
        ("glib-networking" ,glib-networking)
        ("libtiff" ,libtiff)
-       ("libjpeg" ,libjpeg-8)
+       ("libjpeg" ,libjpeg)
        ("atk" ,atk)
        ("gexiv2" ,gexiv2)
        ("gtk+" ,gtk+-2)

gnu/packages/glib.scm

@@ -787,7 +787,7 @@ programming langauage.  It also contains the utility
 (define-public appstream-glib
   (package
     (name "appstream-glib")
-    (version "0.7.5")
+    (version "0.7.10")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://people.freedesktop.org/~hughsient/"
@@ -795,7 +795,7 @@ programming langauage.  It also contains the utility
                                   "appstream-glib-" version ".tar.xz"))
               (sha256
                (base32
-                "0ps80cbqnf3q86rvz3ajqjssdgkjc9kmynqf0wxqfir7ayc9y9ag"))))
+                "08bs0hnkvdzqv9pakv1y4c4ph77rmzjq22g760w20sv7vs63nia3"))))
     (build-system meson-build-system)
     (native-inputs
      `(("gettext" ,gettext-minimal)

gnu/packages/gnome.scm

@@ -30,6 +30,7 @@
 ;;; Copyright © 2017 Brendan Tildesley <brendan.tildesley@openmailbox.org>
 ;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com>
 ;;; Copyright © 2018 Jovany Leandro G.C <bit4bit@riseup.net>
+;;; Copyright © 2018 Vasile Dumitrascu <va511e@yahoo.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -2110,7 +2111,7 @@ editors, IDEs, etc.")
   (package
     (inherit vte)
     (name "vte-ng")
-    (version "0.50.2.a")
+    (version "0.52.2.a")
     (native-inputs
      `(("gtk-doc" ,gtk-doc)
        ("gperf" ,gperf)
@@ -2125,14 +2126,13 @@ editors, IDEs, etc.")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "0sv666ilid916ja6gw2d376nyyy66gvhsds8ans02x4b7gagj5sx"))))
+                "1fd65mk7c87k03vhnb2ixkjvv9nja04mfq813iyjji1b11f2sh7v"))))
     (arguments
-      `(#:configure-flags '("CXXFLAGS=-Wformat=0")
+     `(#:phases (modify-phases %standard-phases
-        #:phases (modify-phases %standard-phases
                   (replace 'bootstrap
                     (lambda _
                       (setenv "NOCONFIGURE" "true")
-                      (zero? (system* "sh" "autogen.sh")))))))
+                      (invoke "sh" "autogen.sh"))))))
   (synopsis "Enhanced VTE terminal widget")
   (description
    "VTE is a library (libvte) implementing a terminal emulator widget for
@@ -2229,7 +2229,7 @@ and RDP protocols.")
 (define-public dconf
   (package
     (name "dconf")
-    (version "0.26.1")
+    (version "0.28.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2238,47 +2238,34 @@ and RDP protocols.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0da587hpiqy8h3pswn1102h4b905x8k6mk3ajpi7kf4kzkvv30ym"))))
+                "0hn7v6769xabqz7kvyb2hfm19h46z1whkair7ff752zmbs3b7lv1"))))
-    (build-system glib-or-gtk-build-system)
+    (build-system meson-build-system)
+    (propagated-inputs
+     ;; In Requires of dconf.pc.
+     `(("glib" ,glib)))
     (inputs
      `(("gtk+" ,gtk+)
-       ("glib" ,glib)
+       ("dbus" ,dbus)))
-       ("dbus" ,dbus)
-       ("libxml2" ,libxml2)))
     (native-inputs
-     `(("libxslt" ,libxslt)
+     `(("libxslt" ,libxslt)                     ;for xsltproc
+       ("libxml2" ,libxml2)                     ;for XML_CATALOG_FILES
        ("docbook-xml" ,docbook-xml-4.2)
        ("docbook-xsl" ,docbook-xsl)
-       ("intltool" ,intltool)
+       ("glib:bin" ,glib "bin")
-       ("pkg-config" ,pkg-config)))
+       ("gtk-doc" ,gtk-doc)
+       ("pkg-config" ,pkg-config)
+       ("vala" ,vala)))
     (arguments
      `(#:tests? #f ; To contact dbus it needs to load /var/lib/dbus/machine-id
                    ; or /etc/machine-id.
-       #:configure-flags
+       #:glib-or-gtk? #t
-       ;; Set the correct RUNPATH in binaries.
+       #:configure-flags '("-Denable-gtk-doc=true")))
-       (list (string-append "LDFLAGS=-Wl,-rpath="
-                            (assoc-ref %outputs "out") "/lib")
-             "--disable-gtk-doc-html") ; FIXME: requires gtk-doc
-       #:phases
-       (modify-phases %standard-phases
-         (add-before 'configure 'fix-docbook
-           (lambda* (#:key inputs #:allow-other-keys)
-             (substitute* "docs/Makefile.in"
-               (("http://docbook.sourceforge.net/release/xsl/current/manpages/docbook.xsl")
-                (string-append (assoc-ref inputs "docbook-xsl")
-                               "/xml/xsl/docbook-xsl-"
-                               ,(package-version docbook-xsl)
-                               "/manpages/docbook.xsl")))
-             (setenv "XML_CATALOG_FILES"
-                     (string-append (assoc-ref inputs "docbook-xml")
-                                    "/xml/dtd/docbook/catalog.xml"))
-             #t)))))
     (home-page "https://developer.gnome.org/dconf")
     (synopsis "Low-level GNOME configuration system")
     (description "Dconf is a low-level configuration system.  Its main purpose
 is to provide a backend to GSettings on platforms that don't already have
 configuration storage systems.")
-    (license license:lgpl2.1)))
+    (license license:lgpl2.1+)))
 
 (define-public json-glib
   (package
@@ -6477,7 +6464,7 @@ like GNOME, Unity, Budgie, Pantheon, XFCE, Mate, etc.")
 (define-public faba-icon-theme
   (package
     (name "faba-icon-theme")
-    (version "4.1.2")
+    (version "4.3")
     (source
      (origin
        (method url-fetch)
@@ -6486,23 +6473,15 @@ like GNOME, Unity, Budgie, Pantheon, XFCE, Mate, etc.")
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
         (base32
-         "0hi2dl627ayfnihn3v6x9xzid668m4hp098hb7hrkxvahh4h9by7"))))
+         "18ln06xl60qzvzz61zq9q72hdbfgjsza3flph8i2asyzx3dffz68"))))
-    (build-system gnu-build-system)
+    (build-system meson-build-system)
     (arguments
-     '(#:phases
+     `(#:phases
        (modify-phases %standard-phases
-         (add-after 'unpack 'patch-makefile.am
+         (add-before 'configure 'disable-post-install
            (lambda _
-             (substitute* '("Makefile.am")
+             (substitute* "meson.build"
-               (("\\$\\(DESTDIR\\)/usr/share")
+               (("meson.add_install_script.*") "")))))))
-                "$(datadir)"))
-             #t))
-         (add-after 'unpack 'disable-configure-during-bootstrap
-           (lambda _
-             ;; Do not run configure as part of autogen.sh because references
-             ;; to /bin are not fixed yet.
-             (setenv "NOCONFIGURE" "y")
-             #t)))))
     (native-inputs
      `(("autoconf" ,autoconf)
        ("automake" ,automake)))
@@ -6518,7 +6497,7 @@ Moka")
   (package
     (inherit faba-icon-theme)
     (name "moka-icon-theme")
-    (version "5.3.6")
+    (version "5.4.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/moka-project"
@@ -6527,7 +6506,7 @@ Moka")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "04axinv79qnngsxkwqzi5j9lc3hn24rjqps5ai8d42pdnfaf0x37"))))
+                "1nbwdjj268hxv9lfagd9aylily9f0hhallp841v0i3imljp84bmk"))))
     (propagated-inputs
      ;; Moka is based on Faba by using it as a fallback icon set instead of
      ;; bundling it, so we need to add it as a propagated input.

gnu/packages/gnu-pw-mgr.scm

@@ -30,7 +30,7 @@
 (define-public gnu-pw-mgr
   (package
     (name "gnu-pw-mgr")
-    (version "2.3.2")
+    (version "2.3.3")
     (source
      (origin
       (method url-fetch)
@@ -38,7 +38,7 @@
                           version ".tar.xz"))
       (sha256
        (base32
-        "0x60g0syqpd107l8w4bl213imy2lspm4kz1j18yr1sh10rdxlgxd"))))
+        "04xh38j7l0sfnb01kp05xc908pvqfc0lph94k7n9bi46zy3qy7ma"))))
     (build-system gnu-build-system)
     (arguments
      '(#:phases

gnu/packages/gnunet.scm

@@ -67,14 +67,14 @@
 (define-public libextractor
   (package
    (name "libextractor")
-   (version "1.6")
+   (version "1.7")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://gnu/libextractor/libextractor-"
                                 version ".tar.gz"))
             (sha256
              (base32
-              "17gnpgspdhfgcr27j8sn9105vb4lw22yqdrhic62l79q5v5avm16"))))
+              "13wf6vj7mkv6gw8h183cnk7m24ir0gyf198pyb2148ng4klgv9p0"))))
    (build-system gnu-build-system)
    ;; WARNING: Checks require /dev/shm to be in the build chroot, especially
    ;; not to be a symbolic link to /run/shm.

gnu/packages/gnupg.scm

@@ -245,14 +245,14 @@ compatible to GNU Pth.")
 (define-public gnupg
   (package
     (name "gnupg")
-    (version "2.2.8")
+    (version "2.2.9")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnupg/gnupg/gnupg-" version
                                   ".tar.bz2"))
               (sha256
                (base32
-                "1k8dnnfs9888yp713l7kg2jg110lw47s4krx0njna6fjrsw4qyvp"))))
+                "0r11mx8nkh7ysrnshs560amha5csx8zcaggb5kxcksx1zymyly32"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))

gnu/packages/golang.scm

@@ -11,6 +11,7 @@
 ;;; Copyright © 2018 Christopher Baines <mail@cbaines.net>
 ;;; Copyright © 2018 Tomáš Čech <sleep_walker@gnu.org>
 ;;; Copyright © 2018 Pierre-Antoine Rouby <pierre-antoine.rouby@inria.fr>
+;;; Copyright © 2018 Pierre Neidhardt <ambrevar@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -41,6 +42,8 @@
   #:use-module (gnu packages perl)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages pcre)
+  #:use-module (gnu packages lua)
+  #:use-module (gnu packages mp3)
   #:use-module (ice-9 match)
   #:use-module (srfi srfi-1))
 
@@ -1840,3 +1843,518 @@ deliver content")
 store, and deliver content.  It's containe Docker Registry 2.0 and libraries
 to interacting with distribution components.")
       (license license:asl2.0))))
+
+(define-public go-github-com-docker-go-connections
+  (let ((commit "3ede32e2033de7505e6500d6c868c2b9ed9f169d")
+        (revision "0"))
+    (package
+      (name "go-github-com-docker-go-connections")
+      (version (git-version "0.0.0" revision commit))
+      (source
+        (origin
+          (method git-fetch)
+          (uri (git-reference
+                 (url "https://github.com/docker/go-connections.git")
+                 (commit commit)))
+          (file-name (git-file-name name version))
+          (sha256
+            (base32
+              "0v1pkr8apwmhyzbjfriwdrs1ihlk6pw7izm57r24mf9jdmg3fyb0"))))
+      (build-system go-build-system)
+      (arguments
+        '(#:import-path "github.com/docker/go-connections"))
+      (home-page "https://github.com/docker/go-connections")
+      (synopsis "Networking library for Go")
+      (description
+       "This packages provides a library to work with network connections in
+the Go language.  In particular it provides tools to deal with network address
+translation (NAT), proxies, sockets, and transport layer security (TLS).")
+      (license license:asl2.0))))
+
+(define-public go-github-com-docker-machine
+  (let ((commit "7b7a141da84480342357c51838be142bf183b095")
+        (revision "0"))
+    (package
+      (name "go-github-com-docker-machine")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/docker/machine.git")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "0bavk0lvs462yh0lnmnxi9psi5qv1x3nvzmd2b0drsahlp1gxi8s"))))
+      (build-system go-build-system)
+      (arguments
+       '(#:import-path "github.com/docker/machine"))
+      (home-page "https://github.com/docker/machine")
+      (synopsis "Machine management for a container-centric world")
+      (description
+       "@dfn{Machine} lets you create Docker hosts on your computer, on
+hosting providers, and inside your data center.  It creates servers, installs
+Docker on them, then configures the Docker client to talk to them.")
+      (license license:asl2.0))))
+
+(define-public go-github-com-gorhill-cronexpr
+  (let ((commit "f0984319b44273e83de132089ae42b1810f4933b")
+        (revision "0"))
+    (package
+      (name "go-github-com-gorhill-cronexpr")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/gorhill/cronexpr.git")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "0dphhhqy3i7265znv3m8n57l80dmaq6z4hsj5kgd87qd19z8x0l2"))))
+      (build-system go-build-system)
+      (arguments
+       '(#:import-path "github.com/gorhill/cronexpr"))
+      (home-page "https://github.com/gorhill/cronexpr")
+      (synopsis "Cron expression parser in the Go language")
+      (description
+       "This package provides a cron expression parser in the Go language.
+Given a cron expression and a time stamp, you can get the next time stamp
+which satisfies the cron expression.")
+      (license (list license:gpl3+
+                     license:asl2.0)))))
+
+(define-public go-gopkg-in-check-v1
+  (let ((commit "20d25e2804050c1cd24a7eea1e7a6447dd0e74ec")
+        (revision "0"))
+    (package
+      (name "go-gopkg-in-check-v1")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/go-check/check")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "0k1m83ji9l1a7ng8a7v40psbymxasmssbrrhpdv2wl4rhs0nc3np"))))
+      (build-system go-build-system)
+      (arguments
+       '(#:import-path "gopkg.in/check.v1"))
+      (home-page "https://gopkg.in/check.v1")
+      (synopsis "Test framework for the Go language")
+      (description
+       "This package provides a test library for the Go language.")
+      (license license:asl2.0))))
+
+(define-public go-gopkg-in-yaml-v2
+  (let ((commit "14227de293ca979cf205cd88769fe71ed96a97e2")
+        (revision "0"))
+    (package
+      (name "go-gopkg-in-yaml-v2")
+      (version (git-version "0.0.0" revision commit))
+      (source
+        (origin
+          (method git-fetch)
+          (uri (git-reference
+                 (url "https://gopkg.in/yaml.v2.git")
+                 (commit commit)))
+          (file-name (git-file-name name version))
+          (sha256
+            (base32
+              "038hnrjcnjygyi3qidfrkpkakis82qg381sr495d2s40g2dwlzah"))))
+      (build-system go-build-system)
+      (arguments
+       '(#:import-path "gopkg.in/yaml.v2"))
+      (native-inputs
+       `(("go-gopkg-in-check-v1" ,go-gopkg-in-check-v1)))
+      (home-page "https://gopkg.in/yaml.v2")
+      (synopsis "YAML reader and writer for the Go language")
+      (description
+       "This package provides a Go library for encode and decode YAML
+values.")
+      (license license:asl2.0))))
+
+(define-public go-github-com-mattn-go-isatty
+  (let ((commit "6ca4dbf54d38eea1a992b3c722a76a5d1c4cb25c")
+        (revision "0"))
+    (package
+      (name "go-github-com-mattn-go-isatty")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/mattn/go-isatty")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "0zs92j2cqaw9j8qx1sdxpv3ap0rgbs0vrvi72m40mg8aa36gd39w"))))
+      (build-system go-build-system)
+      (arguments
+       '(#:import-path "github.com/mattn/go-isatty"))
+      (home-page "https://github.com/mattn/go-isatty")
+      (synopsis "Provide @code{isatty} for Golang")
+      (description "This package provides @code{isatty}, a Go module that can
+tell you whether a file descriptor points to a terminal and the type of the
+terminal.")
+      (license license:expat))))
+
+(define-public go-github-com-mattn-go-colorable
+  (let ((commit "efa589957cd060542a26d2dd7832fd6a6c6c3ade")
+        (revision "0"))
+    (package
+      (name "go-github-com-mattn-go-colorable")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/mattn/go-colorable")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "0kshi4hvm0ayrsxqxy0599iv81kryhd2fn9lwjyczpj593cq069r"))))
+      (build-system go-build-system)
+      (native-inputs
+       `(("go-github-com-mattn-go-isatty"
+          ,go-github-com-mattn-go-isatty)))
+      (arguments
+       '(#:import-path "github.com/mattn/go-colorable"))
+      (home-page "https://github.com/mattn/go-colorable")
+      (synopsis "Handle ANSI color escapes on Windows")
+      (description "This package provides @code{colorable}, a module that
+makes it possible to handle ANSI color escapes on Windows.")
+      (license license:expat))))
+
+(define-public go-github-com-mgutz-ansi
+  (let ((commit "9520e82c474b0a04dd04f8a40959027271bab992")
+        (revision "0"))
+    (package
+      (name "go-github-com-mgutz-ansi")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url
+                "https://github.com/mgutz/ansi")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "00bz22314j26736w1f0q4jy9d9dfaml17vn890n5zqy3cmvmww1j"))))
+      (build-system go-build-system)
+      (native-inputs
+       `(("go-github-com-mattn-go-isatty"
+          ,go-github-com-mattn-go-isatty)
+         ("go-github-com-mattn-go-colorable"
+          ,go-github-com-mattn-go-colorable)))
+      (arguments
+       '(#:import-path "github.com/mgutz/ansi"))
+      (home-page "https://github.com/mgutz/ansi")
+      (synopsis "Small, fast library to create ANSI colored strings and codes")
+      (description "This package provides @code{ansi}, a Go module that can
+generate ANSI colored strings.")
+      (license license:expat))))
+
+(define-public go-github-com-aarzilli-golua
+  (let ((commit "03fc4642d792b1f2bc5e7343b403cf490f8c501d")
+        (revision "0"))
+    (package
+      (name "go-github-com-aarzilli-golua")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url
+                "https://github.com/aarzilli/golua")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "1d9hr29i36cza98afj3g6rs3l7xbkprwzz0blcxsr9dd7nak20di"))))
+      (build-system go-build-system)
+      (native-inputs
+       `(("lua" ,lua)))
+      (arguments
+       `(#:unpack-path "github.com/aarzilli/golua"
+         #:import-path "github.com/aarzilli/golua/lua"
+         #:phases
+         (modify-phases %standard-phases
+           (replace 'build
+             (lambda* (#:key import-path #:allow-other-keys)
+               (invoke "go" "install"
+                       "-v"  ; print the name of packages as they are compiled
+                       "-x"  ; print each command as it is invoked
+                       "-ldflags=-s -w" ; strip the symbol table and debug
+                       "-tags" "llua" ; Latest Lua on Guix does not have a version number.
+                       import-path)))
+           (replace 'check
+             (lambda* (#:key import-path #:allow-other-keys)
+               (invoke "go" "test"
+                       "-tags" "llua" ; Latest Lua on Guix does not have a version number.
+                       import-path))))))
+      (home-page "https://github.com/aarzilli/golua")
+      (synopsis "Go Bindings for the Lua C API")
+      (description "This package provides @code{lua}, a Go module that can
+run a Lua virtual machine.")
+      (license license:expat))))
+
+(define-public go-gitlab-com-ambrevar-golua-unicode
+  (let ((commit "97ce517e7a1fe2407a90c317a9c74b173d396144")
+        (revision "0"))
+    (package
+      (name "go-gitlab-com-ambrevar-golua-unicode")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url
+                "https://gitlab.com/ambrevar/golua")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "1izcp7p8nagjwqd13shb0020w7xhppib1a3glw2d1468bflhksnm"))))
+      (build-system go-build-system)
+      (native-inputs
+       `(("lua" ,lua)
+         ("go-github-com-aarzilli-golua" ,go-github-com-aarzilli-golua)))
+      (arguments
+       `(#:unpack-path "gitlab.com/ambrevar/golua"
+         #:import-path "gitlab.com/ambrevar/golua/unicode"
+         #:phases
+         (modify-phases %standard-phases
+           (replace 'check
+             (lambda* (#:key import-path #:allow-other-keys)
+               (setenv "USER" "homeless-dude")
+               (invoke "go" "test" import-path))))))
+      (home-page "https://gitlab.com/ambrevar/golua")
+      (synopsis "Add Unicode support to Golua")
+      (description "This extension to Arzilli's Golua adds Unicode support to
+all functions from the Lua string library.  Lua patterns are replaced by Go
+regexps.  This breaks compatibility with Lua, but Unicode support breaks it
+anyways and Go regexps are more powerful.")
+      (license license:expat))))
+
+(define-public go-github-com-yookoala-realpath
+  (let ((commit "d19ef9c409d9817c1e685775e53d361b03eabbc8")
+        (revision "0"))
+    (package
+      (name "go-github-com-yookoala-realpath")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url
+                "https://github.com/yookoala/realpath")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "0qvz1dcdldf53rq69fli76z5k1vr7prx9ds1d5rpzgs68kwn40nw"))))
+      (build-system go-build-system)
+      (arguments
+       `(#:import-path "github.com/yookoala/realpath"))
+      (home-page "https://github.com/yookoala/realpath")
+      (synopsis "@code{realpath} for Golang")
+      (description "This package provides @code{realpath}, a Go module that
+when provided with a valid relative path / alias path, it will return you with
+a string of its real absolute path in the system.")
+      (license license:expat))))
+
+(define-public go-gitlab-com-ambrevar-damerau
+  (let ((commit "883829e1f25fad54015772ea663e69017cf22352")
+        (revision "0"))
+    (package
+      (name "go-gitlab-com-ambrevar-damerau")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url
+                "https://gitlab.com/ambrevar/damerau")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "1b9p8fypc914ij1afn6ir346zsgfqrc5mqc1k3d53n4snypq27qv"))))
+      (build-system go-build-system)
+      (arguments
+       `(#:import-path "gitlab.com/ambrevar/damerau"))
+      (home-page "https://gitlab.com/ambrevar/damerau")
+      (synopsis "Damerau-Levenshtein distance for Golang")
+      (description "This is a spelling corrector implementing the
+Damerau-Levenshtein distance.  Takes a string value input from the user.
+Looks for an identical word on a list of words, if none is found, look for a
+similar word.")
+      (license license:expat))))
+
+(define-public go-github-com-stevedonovan-luar
+  (let ((commit "22d247e5366095f491cd83edf779ee99a78f5ead")
+        (revision "0"))
+    (package
+      (name "go-github-com-stevedonovan-luar")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url
+                "https://github.com/stevedonovan/luar")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "1acjgw9cz1l0l9mzkyk7irz6cfk31wnxgbwa805fvm1rqcjzin2c"))))
+      (build-system go-build-system)
+      (native-inputs
+       `(("go-github-com-aarzilli-golua" ,go-github-com-aarzilli-golua)))
+      (arguments
+       `(#:tests? #f                    ; Upstream tests are broken.
+         #:import-path "github.com/stevedonovan/luar"))
+      (home-page "https://github.com/stevedonovan/luar")
+      (synopsis "Lua reflection bindings for Go")
+      (description "Luar is designed to make using Lua from Go more
+convenient.  Go structs, slices and maps can be automatically converted to Lua
+tables and vice-versa.  The resulting conversion can either be a copy or a
+proxy.  In the latter case, any change made to the result will reflect on the
+source.
+
+Any Go function can be made available to Lua scripts, without having to write
+C-style wrappers.
+
+Luar support cyclic structures (lists, etc.).
+
+User-defined types can be made available to Lua as well: their exported
+methods can be called and usual operations such as indexing or arithmetic can
+be performed.")
+      (license license:expat))))
+
+(define-public go-github-com-kr-text
+  (let ((commit "e2ffdb16a802fe2bb95e2e35ff34f0e53aeef34f")
+        (revision "0"))
+    (package
+      (name "go-github-com-kr-text")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url
+                "https://github.com/kr/text")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "1gm5bsl01apvc84bw06hasawyqm4q84vx1pm32wr9jnd7a8vjgj1"))))
+      (build-system go-build-system)
+      (arguments
+       `(#:import-path "github.com/kr/text"))
+      (home-page "https://github.com/kr/text")
+      (synopsis "Go package for manipulating paragraphs of text")
+      (description "Package @code{text} provides manipulation Go functions for
+paragraphs of text.")
+      (license license:expat))))
+
+(define-public go-github-com-michiwend-golang-pretty
+  (let ((commit "8ac61812ea3fa540f3f141a444fcb0dd713cdca4")
+        (revision "0"))
+    (package
+      (name "go-github-com-michiwend-golang-pretty")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url
+                "https://github.com/michiwend/golang-pretty")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "0rjfms0csjqi91xnddzx3rcrcaikc7xc027617px3kdwdap80ir4"))))
+      (build-system go-build-system)
+      (native-inputs
+       `(("go-github-com-kr-text" ,go-github-com-kr-text)))
+      (arguments
+       `(#:tests? #f                    ; Upstream tests seem to be broken.
+         #:import-path "github.com/michiwend/golang-pretty"))
+      (home-page "https://github.com/michiwend/golang-pretty")
+      (synopsis "Pretty printing for Go values")
+      (description "Package @code{pretty} provides pretty-printing for Go
+values.  This is useful during debugging, to avoid wrapping long output lines
+in the terminal.
+
+It provides a function, @code{Formatter}, that can be used with any function
+that accepts a format string.  It also provides convenience wrappers for
+functions in packages @code{fmt} and @code{log}.")
+      (license license:expat))))
+
+(define-public go-github-com-michiwend-gomusicbrainz
+  (let ((commit "0cdeb13f9b24d2c714feb7e3c63d595cf7121d7d")
+        (revision "0"))
+    (package
+      (name "go-github-com-michiwend-gomusicbrainz")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url
+                "https://github.com/michiwend/gomusicbrainz")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "1li9daw0kghb80rdmxbh7g72qhxcvx3rvhwq5gs0jrr9hb8pjvcn"))))
+      (build-system go-build-system)
+      (native-inputs
+       `(("go-github-com-michiwend-golang-pretty" ,go-github-com-michiwend-golang-pretty)
+         ("go-github-com-kr-text" ,go-github-com-kr-text)))
+      (arguments
+       `(#:import-path "github.com/michiwend/gomusicbrainz"))
+      (home-page "https://github.com/michiwend/gomusicbrainz")
+      (synopsis "MusicBrainz WS2 client library for Golang")
+      (description "Currently GoMusicBrainz provides methods to perform search
+and lookup requests.  Browse requests are not supported yet.")
+      (license license:expat))))
+
+(define-public go-github-com-wtolson-go-taglib
+  (let ((commit "6e68349ff94ecea412de7e748cb5eaa26f472777")
+        (revision "0"))
+    (package
+      (name "go-github-com-wtolson-go-taglib")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url
+                "https://github.com/wtolson/go-taglib")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "1cpjqnrviwflz150g78iir5ndrp3hh7a93zbp4dwbg6sb2q141p2"))))
+      (build-system go-build-system)
+      (native-inputs
+       `(("pkg-config" ,pkg-config)
+         ("taglib" ,taglib)))
+      (arguments
+       `(#:import-path "github.com/wtolson/go-taglib"))
+      (home-page "https://github.com/wtolson/go-taglib")
+      (synopsis "Go wrapper for taglib")
+      (description "Go wrapper for taglib")
+      (license license:unlicense))))

gnu/packages/graphics.scm

@@ -3,12 +3,13 @@
 ;;; Copyright © 2015 Tomáš Čech <sleep_walker@gnu.org>
 ;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2017 Manolis Fragkiskos Ragkousis <manolis837@gmail.com>
 ;;; Copyright © 2017, 2018 Ben Woodcroft <donttrustben@gmail.com>
 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018 Mathieu Othacehe <m.othacehe@gmail.com>
+;;; Copyright © 2018 Alex Kost <alezost@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -160,19 +161,20 @@ application can be customized via its API for Python scripting.")
 (define-public assimp
   (package
     (name "assimp")
-    (version "3.3.1")
+    (version "4.1.0")
     (source (origin
-              (method url-fetch)
+              (method git-fetch)
-              (uri (string-append "https://github.com/assimp/assimp/archive/v"
+              (uri (git-reference
-                                  version ".tar.gz"))
+                    (url "https://github.com/assimp/assimp.git")
-              (file-name (string-append name "-" version ".tar.gz"))
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "1gy7zlgkf4nmyv8n674p3f30asis0gjz8icyy11i693n13ww71fk"))))
+                "1rhyqfhzifdj7yibyanph3rh13ykw3i98dnn8mz65j780472hw28"))))
     (build-system cmake-build-system)
     (inputs
      `(("zlib" ,zlib)))
-    (home-page "http://assimp.org/")
+    (home-page "http://www.assimp.org/")
     (synopsis "Asset import library")
     (description
      "The Open Asset Import Library loads more than 40 3D file formats into
@@ -372,13 +374,14 @@ storage of the \"EXR\" file format for storing 16-bit floating-point images.")
     (name "openimageio")
     (version "1.7.19")
     (source (origin
-              (method url-fetch)
+              (method git-fetch)
-              (uri (string-append "https://github.com/OpenImageIO/oiio/"
+              (uri (git-reference
-                                  "archive/Release-" version ".tar.gz"))
+                    (url "https://github.com/OpenImageIO/oiio.git")
-              (file-name (string-append name "-" version ".tar.gz"))
+                    (commit (string-append "Release-" version))))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "1qlmfhvl2wva4aifyiq7c4sdy61ddl7wykwvlpfys9p701xghvj7"))))
+                "0yxxy43l3lllw7maqg42dlkgqms2d4772sxzxk7kmxg4lnhsvndc"))))
     (build-system cmake-build-system)
     ;; FIXME: To run all tests successfully, test image sets from multiple
     ;; third party sources have to be present.  For details see
@@ -389,7 +392,7 @@ storage of the \"EXR\" file format for storing 16-bit floating-point images.")
     (inputs
      `(("boost" ,boost)
        ("libpng" ,libpng)
-       ("libjpeg" ,libjpeg-8)
+       ("libjpeg" ,libjpeg)
        ("libtiff" ,libtiff)
        ("giflib" ,giflib)
        ("openexr" ,openexr)
@@ -408,17 +411,19 @@ visual effects work for film.")
 (define-public openscenegraph
   (package
     (name "openscenegraph")
-    (version "3.4.0")
+    (version "3.6.2")
     (source
      (origin
-       (method url-fetch)
+       (method git-fetch)
-       (uri (string-append "http://trac.openscenegraph.org/downloads/developer_releases/"
+       (uri (git-reference
-                           "OpenSceneGraph-" version ".zip"))
+             (url "https://github.com/openscenegraph/OpenSceneGraph")
+             (commit (string-append "OpenSceneGraph-" version))))
        (sha256
         (base32
-         "03h4wfqqk7rf3mpz0sa99gy715cwpala7964z2npd8jxfn27swjw"))
+         "03jk6lclyd4biniaw04w7j0z1spkm69f1c19i37b8v9x3zv1p1id"))
-       (patches (search-patches "openscenegraph-ffmpeg3.patch"))
+       (file-name (string-append name "-" version "-checkout"))))
-       (file-name (string-append name "-" version ".zip"))))
+    (properties
+     `((upstream-name . "OpenSceneGraph")))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f ; no test target available
@@ -430,11 +435,13 @@ visual effects work for film.")
                             (assoc-ref %outputs "out") "/lib:"
                             (assoc-ref %outputs "out") "/lib64"))))
     (native-inputs
-     `(("unzip" ,unzip)))
+     `(("pkg-config" ,pkg-config)
+       ("unzip" ,unzip)))
     (inputs
      `(("giflib" ,giflib)
        ("jasper" ,jasper)
        ("librsvg" ,librsvg)
+       ("libxrandr" ,libxrandr)
        ("pth" ,pth)
        ("qtbase" ,qtbase)
        ("ffmpeg" ,ffmpeg)

gnu/packages/guile.scm

@@ -74,6 +74,7 @@
   #:use-module (guix download)
   #:use-module (guix git-download)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system guile)
   #:use-module (guix build-system trivial)
   #:use-module (guix utils)
   #:use-module (ice-9 match)
@@ -965,60 +966,8 @@ specification.  These are the main features:
               (sha256
                (base32
                 "0r50jlpzi940jlmxyy3ddqqwmj5r12gb4bcv0ssini9v8km13xz6"))))
-    (build-system trivial-build-system)
+    (build-system guile-build-system)
-    (arguments
+    (native-inputs
-     `(#:modules ((guix build utils))
-       #:builder
-       (begin
-         (use-modules (guix build utils)
-                      (ice-9 match)
-                      (ice-9 popen)
-                      (ice-9 rdelim))
-
-         (let* ((out (assoc-ref %outputs "out"))
-                (guile (assoc-ref %build-inputs "guile"))
-                (effective (read-line
-                            (open-pipe* OPEN_READ
-                                        (string-append guile "/bin/guile")
-                                        "-c" "(display (effective-version))")))
-                (module-dir (string-append out "/share/guile/site/"
-                                           effective))
-                (source (assoc-ref %build-inputs "source"))
-                (doc (string-append out "/share/doc/guile-minikanren"))
-                (scm-files '("minikanren.scm"
-                             "minikanren/mkextraforms.scm"
-                             "minikanren/mkprelude.scm"
-                             "minikanren/mk.scm"))
-                (guild (string-append (assoc-ref %build-inputs "guile")
-                                      "/bin/guild")))
-           ;; Make installation directories.
-           (mkdir-p (string-append module-dir "/minikanren"))
-           (mkdir-p doc)
-
-           ;; Compile .scm files and install.
-           (chdir source)
-           (setenv "GUILE_AUTO_COMPILE" "0")
-           (for-each (lambda (file)
-                       (let* ((dest-file (string-append module-dir "/"
-                                                        file))
-                              (go-file (match (string-split file #\.)
-                                         ((base _)
-                                          (string-append module-dir "/"
-                                                         base ".go")))))
-                         ;; Install source module.
-                         (copy-file file dest-file)
-                         ;; Install compiled module.
-                         (invoke guild "compile"
-                                 "-L" source
-                                 "-o" go-file
-                                 file)))
-                     scm-files)
-
-           ;; Also copy over the README.
-           (install-file "README.org" doc)
-
-           #t))))
-    (inputs
      `(("guile" ,guile-2.2)))
     (home-page "https://github.com/ijp/minikanren")
     (synopsis "MiniKanren declarative logic system, packaged for Guile")
@@ -1055,46 +1004,8 @@ See http://minikanren.org/ for more on miniKanren generally.")
                 (sha256
                  (base32
                   "09q51zkw2fypad5xixskfzw2cjhjgs5cswdp3i7cpp651rb3zndh"))))
-      (build-system gnu-build-system)
+      (build-system guile-build-system)
-      (arguments
+      (native-inputs
-       `(#:modules ((guix build utils)
-                    (ice-9 popen)
-                    (ice-9 rdelim)
-                    (srfi srfi-1)
-                    (guix build gnu-build-system))
-         #:tests? #f                    ; there is no test target
-         #:phases
-         (modify-phases %standard-phases
-           (delete 'configure)
-           (delete 'build)
-           (replace 'install
-             (lambda* (#:key outputs #:allow-other-keys)
-               (let* ((cwd        (getcwd))
-                      (scm-files  (find-files "." "\\.scm$"))
-                      (effective  (read-line
-                                   (open-pipe* OPEN_READ
-                                               "guile" "-c"
-                                               "(display (effective-version))")))
-                      (module-dir (string-append (assoc-ref outputs "out")
-                                                 "/share/guile/site/"
-                                                 effective)))
-
-                 ;; Make installation directories.
-                 (mkdir-p module-dir)
-
-                 (setenv "GUILE_AUTO_COMPILE" "0")
-
-                 ;; Compile .scm files and install.
-                 (every (lambda (file)
-                          (let ((go-file (string-append module-dir "/"
-                                                        (basename file ".scm") ".go")))
-                            ;; Install source module.
-                            (install-file file module-dir)
-                            ;; Compile and install module.
-                            (zero? (system* "guild" "compile" "-L" cwd
-                                            "-o" go-file file))))
-                        scm-files)))))))
-      (inputs
        `(("guile" ,guile-2.2)))
       (home-page "https://github.com/fisherdj/miniAdapton")
       (synopsis "Minimal implementation of incremental computation in Guile
@@ -1120,65 +1031,25 @@ understand, extend, and port to host languages other than Scheme.")
               (sha256
                (base32
                 "1ia3m7dp3lcxa048q0gqbiwwsyvn99baw6xkhb4bhhzn4k7bwyqq"))))
-    (build-system gnu-build-system)
+    (build-system guile-build-system)
     (arguments
-     `(#:modules ((guix build utils)
+     '(#:phases (modify-phases %standard-phases
-                  (ice-9 match)
+                  (add-after 'unpack 'move-files-around
-                  (ice-9 rdelim)
+                    (lambda _
-                  (ice-9 popen)
+                      ;; Move the relevant source files to src/ and create the
-                  (guix build gnu-build-system))
+                      ;; rx/ directory to match the expected module hierarchy.
-       #:phases
+                      (mkdir-p "src/rx/source")
-       (modify-phases %standard-phases
+                      (rename-file "irregex-guile.scm"
-         (delete 'configure)
+                                   "src/rx/irregex.scm")
-         (delete 'build)
+                      (rename-file "irregex.scm"
-         (delete 'check)
+                                   "src/rx/source/irregex.scm")
-         (replace 'install
-           (lambda* (#:key inputs outputs #:allow-other-keys)
-             (let* ((out (assoc-ref outputs "out"))
-                    (effective (read-line
-                                (open-pipe* OPEN_READ
-                                            "guile" "-c"
-                                            "(display (effective-version))")))
-                    (module-dir (string-append out "/share/guile/site/"
-                                               effective))
-                    (source (assoc-ref inputs "source"))
-                    (doc (string-append out "/share/doc/guile-irregex/"))
-                    (guild (string-append (assoc-ref %build-inputs "guile")
-                                          "/bin/guild")))
-               ;; Make installation directories.
-               (mkdir-p (string-append module-dir "/rx/source"))
-               (mkdir-p doc)
-
-               ;; Compile .scm files and install.
-               (setenv "GUILE_AUTO_COMPILE" "0")
-
-               (for-each (lambda (copy-info)
-                           (match copy-info
-                             ((src-file dest-file-basis)
-                              (let* ((dest-file (string-append
-                                                 module-dir dest-file-basis
-                                                 ".scm"))
-                                     (go-file (string-append
-                                               module-dir dest-file-basis
-                                               ".go")))
-                                ;; Install source module.
-                                (copy-file src-file
-                                           dest-file)
-                                ;; Install compiled module.
-                                (invoke guild "compile"
-                                        "-L" (getcwd)
-                                        "-o" go-file
-                                        src-file)))))
-                         '(("irregex-guile.scm" "/rx/irregex")
-                           ("irregex.scm" "/rx/source/irregex")
                       ;; Not really reachable via guile's packaging system,
-                           ;; but nice to have around
+                      ;; but nice to have around.
-                           ("irregex-utils.scm" "/rx/source/irregex-utils")))
+                      (rename-file "irregex-utils.scm"
-
+                                   "src/rx/source/irregex-utils.scm")
-               ;; Also copy over the README.
+                      #t)))
-               (install-file "irregex.html" doc)
+       #:source-directory "src"))
-               #t))))))
+    (native-inputs
-    (inputs
      `(("guile" ,guile-2.2)))
     (home-page "http://synthcode.com/scheme/irregex")
     (synopsis "S-expression based regular expressions")
@@ -1207,83 +1078,35 @@ inspired by the SCSH regular expression system.")
                     (url "https://github.com/ijp/guile-gdbm.git")
                     (commit "fa1d5b6231d0e4d096687b378c025f2148c5f246")))
               (file-name (string-append name "-" version "-checkout"))
+              (patches (search-patches
+                        "guile-gdbm-ffi-support-gdbm-1.14.patch"))
               (sha256
                (base32
                 "1j8wrsw7v9w6qkl47xz0rdikg50v16nn6kbs3lgzcymjzpa7babj"))))
-    (build-system trivial-build-system)
+    (build-system guile-build-system)
-    (inputs
-     `(("guile" ,guile-2.2)
-       ;; patch-and-repack doesn't work for git checkouts,
-       ;; so we must apply the patch manually.
-       ("patch" ,patch)
-       ("patch-file" ,(search-patch
-                       "guile-gdbm-ffi-support-gdbm-1.14.patch"))))
-    (propagated-inputs
-     `(("gdbm" ,gdbm)))
     (arguments
-     `(#:modules
+     '(#:phases (modify-phases %standard-phases
-       ((guix build utils))
+                  (add-after 'unpack 'move-examples
-       #:builder
+                    (lambda* (#:key outputs #:allow-other-keys)
-       (begin
+                      ;; Move examples where they belong.
-         (use-modules (guix build utils)
+                      (let* ((out (assoc-ref outputs "out"))
-                      (ice-9 rdelim)
+                             (doc (string-append out "/share/doc/"
-                      (ice-9 popen))
+                                                 (strip-store-file-name out)
-
+                                                 "/examples")))
-         ;; Avoid warnings we can safely ignore
+                        (copy-recursively "examples" doc)
-         (setenv "GUILE_AUTO_COMPILE" "0")
+                        (delete-file-recursively "examples")
-
+                        #t)))
-         (let* ((out (assoc-ref %outputs "out"))
+                  (add-after 'unpack 'set-libgdbm-file-name
-                (effective-version
+                    (lambda* (#:key inputs #:allow-other-keys)
-                 (read-line
+                      (substitute* "gdbm.scm"
-                  (open-pipe* OPEN_READ
-                              (string-append
-                               (assoc-ref %build-inputs "guile")
-                               "/bin/guile")
-                              "-c" "(display (effective-version))")))
-                (module-dir (string-append out "/share/guile/site/"
-                                           effective-version))
-                (source (assoc-ref %build-inputs "source"))
-                (doc (string-append out "/share/doc"))
-                (guild (string-append (assoc-ref %build-inputs "guile")
-                                      "/bin/guild"))
-                (gdbm.scm-dest
-                 (string-append module-dir "/gdbm.scm"))
-                (gdbm.go-dest
-                 (string-append module-dir "/gdbm.go"))
-                (compile-file
-                 (lambda (in-file out-file)
-                   (invoke guild "compile" "-o" out-file in-file))))
-           ;; Switch directory for compiling and installing
-           (chdir source)
-
-           ;; Install the documentation.
-           (install-file "README.md" doc)
-           (copy-recursively "examples" (string-append doc "/examples"))
-
-           ;; Make installation directories.
-           (mkdir-p module-dir)
-
-           ;; copy the source
-           (copy-file "gdbm.scm" gdbm.scm-dest)
-
-           ;; Patch the FFI
-           (substitute* gdbm.scm-dest
                         (("\\(dynamic-link \"libgdbm\"\\)")
                          (format #f "(dynamic-link \"~a/lib/libgdbm.so\")"
-                      (assoc-ref %build-inputs "gdbm"))))
+                                 (assoc-ref inputs "gdbm"))))
-
+                      #t)))))
-           ;; Apply the patch to add support for gdbm-1.14.
+    (native-inputs
-           (let ((patch-command (string-append (assoc-ref %build-inputs "patch")
+     `(("guile" ,guile-2.2)))
-                                               "/bin/patch"))
+    (inputs
-                 (patch-file (assoc-ref %build-inputs "patch-file")))
+     `(("gdbm" ,gdbm)))
-             (with-directory-excursion (dirname gdbm.scm-dest)
-               (format #t "applying '~a'...~%" patch-file)
-               (invoke patch-command "--force" "--input" patch-file)))
-
-           ;; compile to the destination
-           (compile-file gdbm.scm-dest gdbm.go-dest)
-
-           #t))))
     (home-page "https://github.com/ijp/guile-gdbm")
     (synopsis "Guile bindings to the GDBM library via Guile's FFI")
     (description
@@ -2142,32 +1965,8 @@ It has a nice, simple s-expression based syntax.")
               (sha256
                (base32
                 "16xhc3an6aglnca8xl3mvgi8hsqzqn68vsl5ga4bz8bvbap5fn4p"))))
-    (build-system gnu-build-system)
+    (build-system guile-build-system)
-    (arguments
+    (native-inputs
-     `(#:modules ((system base compile)
-                  ,@%gnu-build-system-modules)
-       #:tests? #f ;No tests included
-       #:phases
-       (modify-phases %standard-phases
-         (delete 'configure) ;No configure script
-         (replace 'install
-           (lambda* (#:key outputs inputs #:allow-other-keys)
-             (let* ((out (assoc-ref outputs "out"))
-                    (module-dir (string-append out "/share/guile/site/2.2"))
-                    (language-dir (string-append module-dir "/ice-9"))
-                    (guild (string-append (assoc-ref inputs "guile")
-                                          "/bin/guild")))
-               ;; The original 'make install' is too primitive.
-
-               ;; copy the source
-               (install-file "ice-9/colorized.scm" language-dir)
-
-               ;; compile to the destination
-               (compile-file "ice-9/colorized.scm"
-                             #:output-file (string-append
-                                            language-dir "/colorized.go"))
-               #t))))))
-    (inputs
      `(("guile" ,guile-2.2)))
     (home-page "https://github.com/NalaGinrut/guile-colorized")
     (synopsis "Colorized REPL for Guile")
@@ -2175,6 +1974,78 @@ It has a nice, simple s-expression based syntax.")
      "Guile-colorized provides you with a colorized REPL for GNU Guile.")
     (license license:gpl3+)))
 
+(define-public guile-pfds
+  (package
+    (name "guile-pfds")
+    (version "0.3")
+    (home-page "https://github.com/ijp/pfds")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url home-page)
+                    (commit (string-append "v" version))))
+              (sha256
+               (base32
+                "19y33wg94pf0n98dkfqd1zbw93fgky4sawxsxl6s3vyqwl0yi5vh"))
+              (file-name (string-append name "-" version "-checkout"))))
+    (build-system guile-build-system)
+    (arguments
+     '(#:source-directory "src"
+       #:phases (modify-phases %standard-phases
+                  (add-after 'unpack 'move-files-around
+                    (lambda _
+                      ;; Move files under a pfds/ directory to reflect the
+                      ;; module hierarchy.
+                      (mkdir-p "src/pfds")
+                      (for-each (lambda (file)
+                                  (rename-file file
+                                               (string-append "src/pfds/"
+                                                              file)))
+                                '("bbtrees.sls"
+                                  "deques"
+                                  "deques.sls"
+                                  "dlists.sls"
+                                  "fingertrees.sls"
+                                  "hamts.sls"
+                                  "heaps.sls"
+                                  "private"
+                                  "psqs.sls"
+                                  "queues"
+                                  "queues.sls"
+                                  "sequences.sls"
+                                  "sets.sls"))
+
+                      ;; In Guile <= 2.2.4, there's no way to tell 'guild
+                      ;; compile' to accept the ".sls" extension.  So...
+                      (for-each (lambda (file)
+                                  (rename-file file
+                                               (string-append
+                                                (string-drop-right file 4)
+                                                ".scm")))
+                                (find-files "." "\\.sls$"))
+                      #t)))))
+    (native-inputs
+     `(("guile" ,guile-2.2)))
+    (synopsis "Purely functional data structures for Guile")
+    (description
+     "This package provides purely functional data structures written in R6RS
+Scheme and compiled for Guile.  It has been tested with Racket, Guile 2,
+Vicare Scheme and IronScheme.  Right now it contains:
+
+@itemize
+@item queues
+@item deques
+@item bbtrees
+@item sets
+@item dlists
+@item priority search queues (PSQs)
+@item finger trees
+@item sequences
+@item heaps
+@item hash array mapped tries (HAMTs).
+@end itemize\n")
+    (license license:bsd-3)))
+
 (define-public guile-simple-zmq
   (let ((commit "1f3b7c0b9b249c6fde8e8a632b252d8a1b794424")
         (revision "1"))
@@ -2191,72 +2062,20 @@ It has a nice, simple s-expression based syntax.")
           (base32
            "0nj2pd5bsmmgd3c54wh4sixfhmsv1arsq7yam2d7487h3n9q57r7"))
          (file-name (git-file-name name version))))
-      (build-system trivial-build-system)
+      (build-system guile-build-system)
       (arguments
-       `(#:modules ((guix build utils))
+       `(#:source-directory "src"
-         #:builder
+         #:phases (modify-phases %standard-phases
-         (begin
+                    (add-after 'unpack 'set-libzmq-file-name
-           (use-modules (guix build utils)
+                      (lambda* (#:key inputs #:allow-other-keys)
-                        (srfi srfi-26)
+                        (substitute* "src/simple-zmq.scm"
-                        (ice-9 match)
-                        (ice-9 popen)
-                        (ice-9 rdelim))
-
-           (let* ((out (assoc-ref %outputs "out"))
-                  (guile (assoc-ref %build-inputs "guile"))
-                  (effective (read-line
-                              (open-pipe* OPEN_READ
-                                          (string-append guile "/bin/guile")
-                                          "-c" "(display (effective-version))")))
-                  (module-dir (string-append out "/share/guile/site/"
-                                             effective))
-                  (go-dir     (string-append out "/lib/guile/"
-                                             effective "/site-ccache/"))
-                  (source     (string-append (assoc-ref %build-inputs "source")
-                                             "/src"))
-                  (scm-file "simple-zmq.scm")
-                  (guild (string-append (assoc-ref %build-inputs "guile")
-                                        "/bin/guild"))
-                  (zmq  (assoc-ref %build-inputs "zeromq"))
-                  (deps (list zmq))
-                  (path (string-join
-                         (map (cut string-append <>
-                                   "/lib/")
-                              deps)
-                         ":")))
-             ;; Make installation directories.
-             (mkdir-p module-dir)
-             (mkdir-p go-dir)
-
-             ;; Compile .scm files and install.
-             (chdir source)
-             (setenv "GUILE_AUTO_COMPILE" "0")
-             (for-each (lambda (file)
-                         (let* ((dest-file (string-append module-dir "/"
-                                                          file))
-                                (go-file (match (string-split file #\.)
-                                           ((base _)
-                                            (string-append go-dir "/"
-                                                           base ".go")))))
-                           ;; Install source module.
-                           (copy-file file dest-file)
-                           (substitute* dest-file
                           (("\\(dynamic-link \"libzmq\"\\)")
                            (format #f "(dynamic-link \"~a/lib/libzmq.so\")"
-                                      (assoc-ref %build-inputs "zeromq"))))
+                                   (assoc-ref inputs "zeromq"))))
-
+                        #t)))))
-                           ;; Install and compile module.
+      (native-inputs
-                           (unless (zero? (system* guild "compile"
-                                                   "-L" source
-                                                   "-o" go-file
-                                                   dest-file))
-                             (error (format #f "Failed to compile ~s to ~s!"
-                                            file go-file)))))
-                       (list scm-file))
-             #t))))
-      (inputs
        `(("guile" ,guile-2.2)))
-      (propagated-inputs
+      (inputs
        `(("zeromq" ,zeromq)))
       (home-page "https://github.com/jerry40/guile-simple-zmq")
       (synopsis "Guile wrapper over ZeroMQ library")
@@ -2280,106 +2099,46 @@ messaging library.")
          (sha256
           (base32
            "0y5jr0f0dyskvsawqbf6n0bpg8jirw4mhqbarf2a6p9lxhqha9s9"))))
-      (build-system trivial-build-system)
+      (build-system guile-build-system)
       (arguments
-       `(#:modules ((guix build utils))
+       '(#:phases (modify-phases %standard-phases
-         #:builder
+                    (add-after 'unpack 'set-openssl-file-name
-         (begin
+                      (lambda* (#:key inputs #:allow-other-keys)
-           (use-modules (guix build utils)
+                        ;; Record the absolute file name of the 'openssl'
-                        (srfi srfi-26)
+                        ;; command.
-                        (ice-9 match)
+                        (substitute* "src/hmac.scm"
-                        (ice-9 popen)
-                        (ice-9 rdelim))
-
-           (let* ((out (assoc-ref %outputs "out"))
-                  (guile (assoc-ref %build-inputs "guile"))
-                  (effective (read-line
-                              (open-pipe* OPEN_READ
-                                          (string-append guile "/bin/guile")
-                                          "-c" "(display (effective-version))")))
-                  (module-dir (string-append out "/share/guile/site/"
-                                             effective))
-                  (kernel-dir (string-append out "/share/jupyter/kernels/guile"))
-                  (go-dir     (string-append out "/lib/guile/"
-                                             effective
-                                             "/site-ccache"))
-                  (source     (string-append (assoc-ref %build-inputs "source")
-                                             "/src"))
-                  (scm-files '("hmac.scm"
-                               "tools.scm"
-                               "guile-jupyter-kernel.scm"))
-                  (kernel-file "kernel.json")
-                  (guild  (string-append (assoc-ref %build-inputs "guile")
-                                         "/bin/guild"))
-                  (g-szmq (assoc-ref %build-inputs "guile-simple-zmq"))
-                  (json   (assoc-ref %build-inputs "guile-json"))
-                  (deps   (list g-szmq json))
-                  (path   (string-join
-                           (map (cut string-append <>
-                                     "/share/guile/site/"
-                                     effective)
-                                deps)
-                           ":"))
-                  (gopath (string-join
-                           (map (cut string-append <>
-                                     "/lib/guile/" effective
-                                     "/site-ccache/")
-                                deps)
-                           ":")))
-
-             ;; Make installation directories.
-             (mkdir-p module-dir)
-             (mkdir-p kernel-dir)
-             (mkdir-p go-dir)
-
-             ;; Make a writable copy of SOURCE.
-             (copy-recursively source ".")
-
-             ;; Record the absolute file name of the 'openssl' command.
-             (substitute* "hmac.scm"
                           (("openssl")
-                (string-append (assoc-ref %build-inputs "openssl")
+                           (string-append (assoc-ref inputs "openssl")
                                           "/bin/openssl")))
+                        #t))
 
-             ;; Compile .scm files and install.
+                    ;; XXX: The code uses 'include' to include its own source
-             (setenv "GUILE_AUTO_COMPILE" "0")
+                    ;; files, and "-L src" isn't enough in this case.
-             (setenv "GUILE_LOAD_PATH" path)
+                    (add-before 'build 'chdir
-             (setenv "GUILE_LOAD_COMPILED_PATH" gopath)
+                      (lambda _ (chdir "src") #t))
+                    (add-after 'build 'chdir-back
+                      (lambda _ (chdir "..") #t))
 
-             (for-each (lambda (file)
+                    (add-after 'install 'install-kernel
-                         (let* ((dest-file (string-append module-dir "/"
+                      (lambda* (#:key inputs outputs #:allow-other-keys)
-                                                          file))
+                        (let* ((out (assoc-ref outputs "out"))
-                                (go-file (match (string-split file #\.)
+                               (dir (string-append
-                                           ((base _)
+                                     out "/share/jupyter/kernels/guile")))
-                                            (string-append go-dir "/"
+                          ;; Install kernel.
-                                                           base ".go")))))
+                          (install-file "src/kernel.json" dir)
-                           ;; Install source module.
-                           (copy-file file dest-file)
 
-                           ;; Install compiled module.
+                          ;; Fix hard-coded file name in the kernel.
-                           (unless (zero? (system* guild "compile"
+                          (substitute* (string-append dir "/kernel.json")
-                                                   "-L" source
+                            (("/home/.*/guile-jupyter-kernel.scm")
-                                                   "-o" go-file
+                             (string-append out "/share/guile/site/"
-                                                   file))
+                                            (target-guile-effective-version)
-                             (error (format #f "Failed to compile ~s to ~s!"
+                                            "/guile-jupyter-kernel.scm"))
-                                            file go-file)))))
-                       scm-files)
-
-             ;; Install kernel
-             (copy-file kernel-file (string-append kernel-dir "/"
-                                                   kernel-file))
-             ;; Fix hard-coded file name in the kernel
-             (substitute* (string-append kernel-dir "/"
-                                         kernel-file)
-               (("/home/jerry/.local/share/jupyter/kernels/guile/guile-jupyter-kernel.scm")
-                (string-append module-dir "/guile-jupyter-kernel.scm"))
                             (("\"guile\"")
-                (string-append "\"" (assoc-ref %build-inputs "guile")
+                             (string-append "\"" (assoc-ref inputs "guile")
                                             "/bin/guile\""))
                             (("-s")
                              (string-append "--no-auto-compile\", \"-s")))
-
+                          #t))))))
-             #t))))
       (inputs
        `(("openssl" ,openssl)
          ("guile" ,guile-2.2)))

gnu/packages/haskell.scm

@@ -2487,6 +2487,31 @@ Haskell library @code{regex-base}.")
 @code{libtre} (fork by Roman Cheplyaka).")
     (license license:bsd-3)))
 
+(define-public ghc-regex-tdfa-text
+  (package
+    (name "ghc-regex-tdfa-text")
+    (version "1.0.0.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://hackage.haskell.org/package/regex-tdfa-text/"
+             "regex-tdfa-text-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0090g6lgbdm9lywpqm2d3724nnnh24nx3vnlqr96qc2w486pmmrq"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-text" ,ghc-text)
+       ("ghc-regex-base" ,ghc-regex-base)
+       ("ghc-regex-tdfa" ,ghc-regex-tdfa)))
+    (home-page
+     "http://hackage.haskell.org/package/regex-tdfa-text")
+    (synopsis "Text interface for regex-tdfa")
+    (description
+     "This provides an extra text interface for regex-tdfa.")
+    (license license:bsd-3)))
+
 (define-public ghc-parsers
   (package
     (name "ghc-parsers")
@@ -9678,4 +9703,23 @@ serialization code.")
 disk space usage.")
     (license license:bsd-3)))
 
+(define-public ghc-xdg-basedir
+  (package
+    (name "ghc-xdg-basedir")
+    (version "0.2.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://hackage.haskell.org/package/xdg-basedir/"
+             "xdg-basedir-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0azlzaxp2dn4l1nr7shsxah2magk1szf6fx0mv75az00qsjw6qg4"))))
+    (build-system haskell-build-system)
+    (home-page "http://github.com/willdonnelly/xdg-basedir")
+    (synopsis "XDG Base Directory library for Haskell")
+    (description "This package provides a library implementing the XDG Base Directory spec.")
+    (license license:bsd-3)))
+
 ;;; haskell.scm ends here

gnu/packages/image-viewers.scm

@@ -60,7 +60,7 @@
 (define-public feh
   (package
     (name "feh")
-    (version "2.27")
+    (version "2.27.1")
     (home-page "https://feh.finalrewind.org/")
     (source (origin
               (method url-fetch)
@@ -68,7 +68,7 @@
                                   name "-" version ".tar.bz2"))
               (sha256
                (base32
-                "0kn6cka9m76697i495npd60ad64jnfnzv5z6znzyr0vlxx2nhcmg"))))
+                "10zk76l491s22qrv86rax6cvpgwyl3qq0izl2pbk0k1z1kw3ihvf"))))
     (build-system gnu-build-system)
     (arguments
      '(#:phases (modify-phases %standard-phases (delete 'configure))

gnu/packages/image.scm

@@ -1223,21 +1223,21 @@ PNG, and performs PNG integrity checks and corrections.")
 (define-public libjpeg-turbo
   (package
     (name "libjpeg-turbo")
-    (version "1.5.3")
+    (version "2.0.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/" name "/" version "/"
                                   name "-" version ".tar.gz"))
               (sha256
                (base32
-                "08r5b5mywwrxv4axvq80dm31cklz81grczlzlxr2xqa6pgi90j5j"))))
+                "0s48zz6awd493hmb200abmsizh68fh1jmz98r41n4c8dbl87d23p"))))
-    (build-system gnu-build-system)
+    (build-system cmake-build-system)
     (native-inputs
      `(("nasm" ,nasm)))
     (arguments
-     '(#:test-target "test"
+     '(#:configure-flags '("-DCMAKE_INSTALL_LIBDIR:PATH=lib"
-       #:configure-flags (list "--with-build-date=1970-01-01")))
+                           "-DENABLE_STATIC=0")))
-    (home-page "http://www.libjpeg-turbo.org/")
+    (home-page "https://libjpeg-turbo.org/")
     (synopsis "SIMD-accelerated JPEG image handling library")
     (description "libjpeg-turbo is a JPEG image codec that accelerates baseline
 JPEG compression and decompression using SIMD instructions: MMX on x86, SSE2 on
@@ -1248,8 +1248,10 @@ libjpeg-turbo implements both the traditional libjpeg API and the less powerful
 but more straightforward TurboJPEG API, and provides a full-featured Java
 interface.  It supports color space extensions that allow it to compress from
 and decompress to 32-bit and big-endian pixel buffers (RGBX, XBGR, etc.).")
-    (license (list license:bsd-3        ; jsimd*.[ch] and most of simd/
+    ;; libjpeg-turbo is covered by three different licenses; see LICENSE.md.
-                   license:ijg))))      ; the rest
+    (license (list license:bsd-3        ;the TurboJPEG API library and programs
+                   license:ijg          ;the libjpeg library and associated tools
+                   license:zlib))))     ;the libjpeg-turbo SIMD extensions
 
 (define-public niftilib
   (package

gnu/packages/imagemagick.scm

@@ -47,14 +47,14 @@
     ;; The 7 release series has an incompatible API, while the 6 series is still
     ;; maintained. Don't update to 7 until we've made sure that the ImageMagick
     ;; users are ready for the 7-series API.
-    (version "6.9.10-5")
+    (version "6.9.10-8")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://imagemagick/ImageMagick-"
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0sl6f9r7wb081gv8zm450x37lankwp683in1crlx6pskrbsvwc08"))))
+               "0l2fhqrphcx6aw8k2lc6bianfqc1dy17lkyaypfw8scgak8wq6wr"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags '("--with-frozenpaths" "--without-gcc-arch")

gnu/packages/irc.scm

@@ -74,7 +74,6 @@
         (sha256
          (base32
           "1qkl3sb4ijx4k17m0c42j2p5bc4jymypwhmplm942rbrzm6mg50q"))
-        (patches (search-patches "quassel-qt-5.11.patch"))
         (modules '((guix build utils)))
         ;; We don't want to install the bundled scripts.
         (snippet

gnu/packages/iso-codes.scm

@@ -45,7 +45,7 @@
      `(("gettext" ,gettext-minimal)
        ("perl" ,perl)
        ("python" ,python-wrapper)))
-    (home-page "https://pkg-isocodes.alioth.debian.org/")
+    (home-page "https://salsa.debian.org/iso-codes-team/iso-codes")
     (synopsis "Various ISO standards")
     (description
      "This package provides lists of various ISO standards (e.g. country,

gnu/packages/java.scm

@@ -2537,6 +2537,37 @@ ClasspathX project.  It provides implementations of version 3.0 of the servlet
 API and version 2.1 of the Java ServerPages API.")
     (license license:gpl3+)))
 
+(define-public java-javaee-servletapi
+  (package
+    (name "java-javaee-servletapi")
+    (version "3.1.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/javaee/servlet-spec/"
+                                  "archive/" version ".zip"))
+              (file-name (string-append name "-" version ".zip"))
+              (sha256
+               (base32
+                "0m6p13vgfb1ihich1jp5j6fqlhkjsrkn32c86bsbkryp38ipwg8w"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "javax-servletapi.jar"
+       ;; no tests
+       #:tests? #f
+       #:source-dir "src/main/java"))
+    (native-inputs
+     `(("unzip" ,unzip)))
+    (home-page "https://javaee.github.io/servlet-spec/")
+    (synopsis "Java servlet API")
+    (description "Java Servlet is the foundation web specification in the
+Java Enterprise Platform.  Developers can build web applications using the
+Servlet API to interact with the request/response workflow.  This project
+provides information on the continued development of the Java Servlet
+specification.")
+    ;; Main code is dual-licensed by Oracle under either GLP2 or CDDL 1.1.
+    ;; Some files are licensed under ASL 2.0.
+    (license (list license:asl2.0 license:gpl2 license:cddl1.1))))
+
 (define-public java-swt
   (package
     (name "java-swt")
@@ -4450,7 +4481,7 @@ these scripting language engines.")
        #:tests? #f
        #:source-dir "src/java"))
     (inputs
-     `(("java-tomcat" ,java-tomcat)
+     `(("servlet" ,java-classpathx-servletapi)
        ("java-jdom" ,java-jdom)
        ("java-commons-beanutils" ,java-commons-beanutils)))
     (native-inputs
@@ -6165,8 +6196,6 @@ StringTemplate also powers ANTLR.")
              (substitute* "ANTLRv3Parser.java"
                (("public Object getTree") "public CommonTree getTree"))
              (chdir "../../../../../java")
-             (invoke "antlr" "-o" "org/antlr/tool"
-                     "org/antlr/tool/serialize.g")
              (substitute* "org/antlr/tool/LeftRecursiveRuleAnalyzer.java"
                (("import org.antlr.grammar.v3.\\*;") "import org.antlr.grammar.v3.*;
 import org.antlr.grammar.v3.ANTLRTreePrinter;"))
@@ -7911,6 +7940,10 @@ the dependency is said to be unsatisfied, and the application is broken.")
               (uri (string-append "https://github.com/google/guice/archive/"
                                   version ".tar.gz"))
               (file-name (string-append name "-" version ".tar.gz"))
+              (modules '((guix build utils)))
+              (snippet
+               `(begin
+                  (for-each delete-file (find-files "." ".*.jar"))))
               (sha256
                (base32
                 "0dwmqjzlavb144ywqqglj3h68hqszkff8ai0a42hyb5il0qh4rbp"))))
@@ -7943,7 +7976,7 @@ Java 6 and above.")
        #:tests? #f)); FIXME: not in a java subdir
     (inputs
      `(("guice" ,java-guice)
-       ("servlet" ,java-tomcat)
+       ("servlet"  ,java-classpathx-servletapi)
        ,@(package-inputs java-guice)))))
 
 (define-public java-assertj
@@ -8428,15 +8461,15 @@ algorithms and xxHash hashing algorithm.")
 (define-public java-bouncycastle
   (package
     (name "java-bouncycastle")
-    (version "1.59")
+    (version "1.60")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/bcgit/bc-java/archive/r"
-                                  (substring version 0 1) "rv"
+                                  (substring version 0 1) "v"
                                   (substring version 2 4) ".tar.gz"))
               (sha256
                (base32
-                "1bwl499whlbq896w18idqw2dkp8v0wp0npv9g71i5fgf8xjh0k3q"))
+                "0v434513y708qc87k4xz13p2kzydc736lk3ks67df9mg11s7hchv"))
               (modules '((guix build utils)))
               (snippet
                '(begin
@@ -10112,7 +10145,7 @@ and reporting) project dependencies.  It is characterized by the following:
      `(("java-guice" ,java-guice)
        ("java-guice-servlet" ,java-guice-servlet)
        ("java-javax-inject" ,java-javax-inject)
-       ("java-tomcat" ,java-tomcat)
+       ("java-javaee-servletapi" ,java-javaee-servletapi)
        ("java-junit" ,java-junit)
        ("java-slf4j-api" ,java-slf4j-api)
        ("java-jsr305" ,java-jsr305)
@@ -10276,6 +10309,7 @@ static code analysis or code manipulation.")))
               (method url-fetch)
               (uri (string-append "https://github.com/qos-ch/logback/archive/v_"
                                   version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
                 "1x6ga74yfgm94cfx98gybakbrlilx8i2gn6dx13l40kasmys06mi"))
@@ -10306,7 +10340,7 @@ static code analysis or code manipulation.")))
              #t)))))
     (inputs
      `(("java-javax-mail" ,java-javax-mail)
-       ("java-tomcat" ,java-tomcat)
+       ("servlet" ,java-javaee-servletapi)
        ("java-commons-compiler" ,java-commons-compiler)
        ("java-janino" ,java-janino)))
     (native-inputs
@@ -10350,7 +10384,7 @@ This module lays the groundwork for the other two modules.")
                                             (find-files (assoc-ref inputs input)
                                                         ".*.jar"))
                                           '("java-logback-core" "java-slf4j-api"
-                                            "java-commons-compiler" "java-tomcat"
+                                            "java-commons-compiler" "servlet"
                                             "groovy")))
                        ":"))
              (apply invoke "groovyc" "-d" "build/classes" "-j"

gnu/packages/julia.scm

@@ -314,7 +314,7 @@
         "USE_SYSTEM_LIBGIT2=1"
         "USE_SYSTEM_OPENSPECFUN=1")))
     (inputs
-     `(("llvm" ,llvm)
+     `(("llvm" ,llvm-3.9.1)
 
        ;; The bundled version is 3.3.0 so stick to that version.  With other
        ;; versions, we get test failures in 'linalg/arnoldi' as described in

gnu/packages/kodi.scm

@@ -395,7 +395,7 @@ generator library for C++.")
        ("libxrender" ,libxrender)
        ("libxslt" ,libxslt)
        ("lzo" ,lzo)
-       ("mysql" ,mysql)
+       ("mariadb" ,mariadb)
        ("openssl" ,openssl)
        ("pcre" ,pcre)
        ("pulseaudio" ,pulseaudio)

gnu/packages/libreoffice.scm

@@ -754,7 +754,7 @@ word compounding or character encoding.")
     (name (match variant
             ("classique" "hunspell-dict-fr")
             (_ (string-append "hunspell-dict-fr-" variant))))
-    (version "6.1")
+    (version "6.2")
     (source (origin
               (uri (string-append
                     "http://www.dicollecte.org/download/fr/hunspell-french-dictionaries-v"
@@ -762,7 +762,7 @@ word compounding or character encoding.")
               (method url-fetch)
               (sha256
                (base32
-                "0w2hzh36wj3lsj2yd4mh7z7547dg452sywj79vnzx27csclwqshc"))))
+                "139hfrn5p87sl8hqmgkf6sgvnxrk2mm8vd8xsm8sm98qjnwlg0f9"))))
     (build-system trivial-build-system)
     (native-inputs `(("unzip" ,unzip)))
     (arguments

gnu/packages/libusb.scm

@@ -65,7 +65,7 @@
     (arguments `(#:configure-flags '("--disable-udev")))
     ;; (inputs `(("eudev" ,eudev)))
 
-    (home-page "http://libusb.info")
+    (home-page "https://libusb.info")
     (synopsis "User-space USB library")
     (description
      "Libusb is a library that gives applications easy access to USB
@@ -91,7 +91,7 @@ devices on various operating systems.")
      `(("pkg-config" ,pkg-config)))
     (inputs
      `(("libusb" ,libusb)))
-    (home-page "http://libusb.info")
+    (home-page "https://libusb.info")
     (synopsis "Compatibility shim for libusb")
     (description
      "Libusb-compat provides a shim allowing applications based on older

gnu/packages/linux.scm

@@ -28,6 +28,7 @@
 ;;; Copyright © 2017 nee <nee-git@hidamari.blue>
 ;;; Copyright © 2017 Dave Love <fx@gnu.org>
 ;;; Copyright © 2018 Pierre-Antoine Rouby <pierre-antoine.rouby@inria.fr>
+;;; Copyright © 2018 Brendan Tildesley <brendan.tildesley@openmailbox.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -59,6 +60,7 @@
   #:use-module (gnu packages calendar)
   #:use-module (gnu packages check)
   #:use-module (gnu packages crypto)
+  #:use-module (gnu packages cryptsetup)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages databases)
   #:use-module (gnu packages datastructures)
@@ -402,8 +404,8 @@ It has been modified to remove all non-free binary blobs.")
 ;; supports qemu "virt" machine and possibly a large number of ARM boards.
 ;; See : https://wiki.debian.org/DebianKernel/ARMMP.
 
-(define %linux-libre-version "4.17.4")
+(define %linux-libre-version "4.17.10")
-(define %linux-libre-hash "1qdywncwwaxghjidihyzvdjq7pffzlswlspjyy420ny967n818jd")
+(define %linux-libre-hash "1ab349s18avigd2592i11pab4klqzzxy11a1zp16mb842d8chkj2")
 
 (define-public linux-libre
   (make-linux-libre %linux-libre-version
@@ -411,8 +413,8 @@ It has been modified to remove all non-free binary blobs.")
                     %linux-compatible-systems
                     #:configuration-file kernel-config))
 
-(define %linux-libre-4.14-version "4.14.53")
+(define %linux-libre-4.14-version "4.14.58")
-(define %linux-libre-4.14-hash "1bl20q85vnhbkmjj6gvqhgp379hk26rrivwmc5g5wqz46xyavk2a")
+(define %linux-libre-4.14-hash "1ny2b5zmgvbxglpy88aicdxix2ygr1qmar2rgaa336czfjninwr5")
 
 (define-public linux-libre-4.14
   (make-linux-libre %linux-libre-4.14-version
@@ -421,14 +423,14 @@ It has been modified to remove all non-free binary blobs.")
                     #:configuration-file kernel-config))
 
 (define-public linux-libre-4.9
-  (make-linux-libre "4.9.111"
+  (make-linux-libre "4.9.115"
-                    "0ld57627k6mjp14x5bvndakj6lc4l31zp2yq74h7ski2g3k7ppk2"
+                    "12n3wwfz22hxqqy7bdchl894x5krylcd4vx65837w7rybnb5w2wj"
                     %intel-compatible-systems
                     #:configuration-file kernel-config))
 
 (define-public linux-libre-4.4
-  (make-linux-libre "4.4.139"
+  (make-linux-libre "4.4.144"
-                    "0x58ykgx7vbv23q763ydifi548mz39nal7wbvrrl4i9ndk7pzfzz"
+                    "1001nw9d51vbiisrjv5ffqigcwfs0r9gav2f8hkw9hzjw64nhanp"
                     %intel-compatible-systems
                     #:configuration-file kernel-config))
 
@@ -537,15 +539,15 @@ at login.  Local and dynamic reconfiguration are its key features.")
 (define-public psmisc
   (package
     (name "psmisc")
-    (version "22.21")
+    (version "23.1")
     (source
      (origin
       (method url-fetch)
       (uri (string-append "mirror://sourceforge/psmisc/psmisc/psmisc-"
-                          version ".tar.gz"))
+                          version ".tar.xz"))
       (sha256
        (base32
-        "0nhlm1vrrwn4a845p6y4nnnb4liq70n74zbdd5dq844jc6nkqclp"))))
+        "0c5s94hqpwfmyswx2f96gifa6wdbpxxpkyxcrlzbxpvmrxsd911f"))))
     (build-system gnu-build-system)
     (inputs `(("ncurses" ,ncurses)))
     (home-page "https://gitlab.com/psmisc/psmisc")
@@ -1609,7 +1611,7 @@ processes currently causing I/O.")
 (define-public fuse
   (package
     (name "fuse")
-    (version "2.9.7")
+    (version "2.9.8")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/libfuse/libfuse/releases/"
@@ -1617,7 +1619,7 @@ processes currently causing I/O.")
                                   "/fuse-" version ".tar.gz"))
               (sha256
                (base32
-                "0x486nri30f7cgy0acj87v9sjxsjrr0cymrvw4h3r0sgmp8k4943"))
+                "1qxg1r1mgysfq6qakmvid2njph3lr00w0swvydsfl9ymilfzi12y"))
               (patches (search-patches "fuse-overlapping-headers.patch"))))
     (build-system gnu-build-system)
     (inputs `(("util-linux" ,util-linux)))
@@ -3283,7 +3285,7 @@ and copy/paste text in the console and in xterm.")
                      ("which" ,which)
                      ;; The tests need 'grep' with perl regexp support.
                      ("grep" ,grep)))
-    (home-page "https://btrfs.wiki.kernel.org/")
+    (home-page "https://btrfs.wiki.kernel.org/index.php/Main_Page")
     (synopsis "Create and manage btrfs copy-on-write file systems")
     (description "Btrfs is a @dfn{copy-on-write} (CoW) file system for Linux
 aimed at implementing advanced features while focusing on fault tolerance,
@@ -3588,7 +3590,7 @@ The following service daemons are also provided:
 (define-public rng-tools
   (package
     (name "rng-tools")
-    (version "6.2")
+    (version "6.3.1")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/nhorman/rng-tools/"
@@ -3596,7 +3598,7 @@ The following service daemons are also provided:
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "0xy4qmfhvkr5z4jr9j55dn5gnajr2jccdp6n0xsxkipjcgag342j"))))
+                "04p7wvcm389s21y9mq8ss6z2szxi4nfrfixzwqjkq2qciz705i4s"))))
     (build-system gnu-build-system)
     (arguments
      `(;; Avoid using OpenSSL, curl, and libxml2, reducing the closure by 166 MiB.
@@ -3699,7 +3701,45 @@ as used on certified hardware security devices.")
          "0zwq19siiwf09h7lwa7n7mgmrr8cxifp45lmwgcfr8c1gviv6b0i"))))
     (build-system gnu-build-system)
     (arguments
-     `(#:configure-flags (list "--disable-pywrap")))
+     `(#:configure-flags (list "--disable-pywrap")
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'patch-source-shebangs 'patch-hardcoded-paths
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let ((out (assoc-ref outputs "out"))
+                   (utils-linux (assoc-ref inputs "utils-linux"))
+                   (cryptsetup (assoc-ref inputs "cryptsetup"))
+                   (linux-pam (assoc-ref inputs "linux-pam"))
+                   (lvm2 (assoc-ref inputs "lvm2")))
+               (substitute* '("src/utils/ecryptfs-mount-private"
+                              "src/utils/ecryptfs-umount-private"
+                              "src/utils/ecryptfs-setup-private"
+                              "src/utils/ecryptfs-setup-swap"
+                              "src/utils/mount.ecryptfs.c"
+                              "src/utils/umount.ecryptfs.c"
+                              "src/pam_ecryptfs/pam_ecryptfs.c"
+                              "src/desktop/ecryptfs-mount-private.desktop.in"
+                              "src/desktop/ecryptfs-setup-private.desktop.in")
+                 (("/bin/mount")
+                  (string-append utils-linux "/bin/mount"))
+                 (("/bin/umount")
+                  (string-append utils-linux "/bin/umount"))
+                 (("/sbin/mount.ecryptfs_private")
+                  (string-append out "/sbin/mount.ecryptfs_private"))
+                 (("/sbin/umount.ecryptfs_private")
+                  (string-append out "/sbin/umount.ecryptfs_private"))
+                 (("/usr/bin/ecryptfs-mount-private")
+                  (string-append out "/bin/ecryptfs-mount-private"))
+                 (("/usr/bin/ecryptfs-rewrite-file")
+                  (string-append out "/bin/ecryptfs-rewrite-file"))
+                 (("/usr/bin/ecryptfs-setup-private")
+                  (string-append out "/bin/ecryptfs-setup-private"))
+                 (("/sbin/cryptsetup")
+                  (string-append cryptsetup "/sbin/cryptsetup"))
+                 (("/sbin/unix_chkpwd")
+                  (string-append linux-pam "/sbin/unix_chkpwd"))
+                 (("/sbin/dmsetup")
+                  (string-append lvm2 "/sbin/dmsetup")))))))))
     (native-inputs
      `(("intltool" ,intltool)
        ("perl" ,perl)                   ; for pod2man
@@ -3707,6 +3747,9 @@ as used on certified hardware security devices.")
     (inputs
      `(("keyutils" ,keyutils)
        ("linux-pam" ,linux-pam)
+       ("utils-linux" ,util-linux)
+       ("cryptsetup" ,cryptsetup)
+       ("lvm2" ,lvm2)
        ("nss" ,nss)))
     (home-page "http://ecryptfs.org/")
     (synopsis "eCryptfs cryptographic file system utilities")

gnu/packages/lsof.scm

@@ -28,7 +28,7 @@
 (define-public lsof
   (package
    (name "lsof")
-   (version "4.89")
+   (version "4.91")
    (source
     (origin
       (method url-fetch)
@@ -53,7 +53,7 @@
                 (string-append "ftp://ftp.mirrorservice.org/sites/"
                                "lsof.itap.purdue.edu/pub/tools/unix/lsof")))))
       (sha256
-       (base32 "061p18v0mhzq517791xkjs8a5dfynq1418a1mwxpji69zp2jzb41"))))
+       (base32 "18sh4hbl9jw2szkf0gvgan8g13f3g4c6s2q9h3zq5gsza9m99nn9"))))
    (build-system gnu-build-system)
    (native-inputs `(("perl" ,perl)))
    (arguments
@@ -73,14 +73,16 @@
         (add-after 'configure 'patch-timestamps
           (lambda _
             (substitute* "Makefile"
-              (("`date`") "`date --date=@1`"))))
+              (("`date`") "`date --date=@1`"))
+            #t))
         (add-before 'check 'disable-failing-tests
           (lambda _
             (substitute* "tests/Makefile"
               ;; Fails with ‘ERROR!!! client gethostbyaddr() failure’.
               (("(STDTST=.*) LTsock" _ prefix) prefix)
               ;; Fails without access to a remote NFS server.
-              (("(OPTTST=.*) LTnfs"  _ prefix) prefix))))
+              (("(OPTTST=.*) LTnfs"  _ prefix) prefix))
+            #t))
         (replace 'check
           (lambda _
             (with-directory-excursion "tests"

gnu/packages/lua.scm

@@ -48,13 +48,13 @@
 (define-public lua
   (package
     (name "lua")
-    (version "5.3.4")
+    (version "5.3.5")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://www.lua.org/ftp/lua-"
                                  version ".tar.gz"))
              (sha256
-              (base32 "0320a8dg3aci4hxla380dx1ifkw8gj4gbw5c4dz41g1kh98sm0gn"))
+              (base32 "1b2qn2rv96nmbm6zab4l877bd4zq7wpwm8drwjiy2ih4jqzysbhc"))
              (patches (search-patches "lua-pkgconfig.patch"
                                       "lua-liblua-so.patch"))))
     (build-system gnu-build-system)

gnu/packages/mail.scm

@@ -261,14 +261,14 @@ aliasing facilities to work just as they would on normal mail.")
 (define-public mutt
   (package
     (name "mutt")
-    (version "1.10.0")
+    (version "1.10.1")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://bitbucket.org/mutt/mutt/downloads/"
                                  "mutt-" version ".tar.gz"))
              (sha256
               (base32
-               "0nskymwr2cdapxlfv0ysz3bjwhb4kcvl5a3c39237k7r1vwva582"))
+               "182lkbkpd3q3l1x6bvyds90ycp38gyyxhf35ry0d3hwf2n1khjkk"))
              (patches (search-patches "mutt-store-references.patch"))))
     (build-system gnu-build-system)
     (inputs
@@ -1071,15 +1071,15 @@ which can add many functionalities to the base client.")
 (define-public msmtp
   (package
     (name "msmtp")
-    (version "1.6.6")
+    (version "1.6.8")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://sourceforge/msmtp/msmtp/" version
+       (uri (string-append "https://marlam.de/msmtp/releases/"
                            "/msmtp-" version ".tar.xz"))
        (sha256
         (base32
-         "0ppvww0sb09bnsrpqnvlrn8vx231r24xn2iiwpy020mxc8gxn5fs"))))
+         "1ysrnshvwhzwmvb2walw5i9jdzlvmckj7inr0xnvb26q0jirbzsm"))))
     (build-system gnu-build-system)
     (inputs
      `(("libidn" ,libidn)
@@ -1089,7 +1089,7 @@ which can add many functionalities to the base client.")
        ("gsasl" ,gsasl)))
     (native-inputs
      `(("pkg-config" ,pkg-config)))
-    (home-page "http://msmtp.sourceforge.net/")
+    (home-page "https://marlam.de/msmtp/")
     (arguments
      `(#:configure-flags (list "--with-libgsasl"
                                "--with-libidn"

gnu/packages/maths.scm

@@ -207,6 +207,37 @@ programming languages.")
     (home-page "https://stcorp.nl/coda")
     (license license:gpl2+)))
 
+(define-public qhull
+  (package
+    (name "qhull")
+    (version "2015.2")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "http://www.qhull.org/download/qhull-"
+                                  (car (string-split version #\.))
+                                  "-src-7.2.0.tgz"))
+              (sha256
+               (base32
+                "0dm4b2xr3asy6w74khq2zg4gf26zsy3qf9sq7pf7lmrvbj911c3q"))))
+    (build-system cmake-build-system)
+    (synopsis "Calculate convex hulls and related structures")
+    (description
+     "@code{Qhull} computes the convex hull, Delaunay triangulation, Voronoi
+diagram, halfspace intersection about a point, furthest-site Delaunay
+triangulation, and furthest-site Voronoi diagram.  The source code runs in 2-d,
+3-d, 4-d, and higher dimensions.  @code{Qhull} implements the Quickhull
+algorithm for computing the convex hull.  It handles roundoff errors from
+floating point arithmetic.  It computes volumes, surface areas, and
+approximations to the convex hull.
+
+@code{Qhull} does not support triangulation of non-convex surfaces, mesh
+generation of non-convex objects, medium-sized inputs in 9-D and higher, alpha
+shapes, weighted Voronoi diagrams, Voronoi volumes, or constrained Delaunay
+triangulations.")
+    (home-page "http://qhull.org")
+    (license (license:non-copyleft "file://COPYING.txt"
+                                   "See COPYING in the distribution."))))
+
 (define-public units
   (package
    (name "units")
@@ -1334,6 +1365,7 @@ can solve two kinds of problems:
     (build-system gnu-build-system)
     (inputs
      `(("lapack" ,lapack)
+       ("qhull" ,qhull)
        ("readline" ,readline)
        ("gl2ps" ,gl2ps)
        ("glpk" ,glpk)
@@ -2952,7 +2984,7 @@ access to BLIS implementations via traditional BLAS routine calls.")
 (define-public openlibm
   (package
     (name "openlibm")
-    (version "0.5.5")
+    (version "0.6.0")
     (source
      (origin
        (method url-fetch)
@@ -2961,7 +2993,7 @@ access to BLIS implementations via traditional BLAS routine calls.")
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
         (base32
-         "1z8cj5q8ca8kmrakwkpjxf8svi81waw0c568cx8v8pv9kvswbp07"))))
+         "0a5fpm8nra5ldhjk0cqd2rx1qh32wiarkxmcqcm5xl8z7l4kjm6l"))))
     (build-system gnu-build-system)
     (arguments
      `(#:make-flags
@@ -3207,19 +3239,19 @@ Failure to do so will result in a library with poor performance.")
 (define-public glm
   (package
     (name "glm")
-    (version "0.9.6.3")
+    (version "0.9.9.0")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://sourceforge/ogl-math/glm-" version
+       (uri (string-append "https://github.com/g-truc/glm/releases/download/"
-                           "/glm-" version ".zip"))
+                           version  "/glm-" version ".zip"))
        (sha256
         (base32
-         "1cnjmi033a16a95v6xfkr1bvfmkd26hzdjka8j1819hgn5b1nr8l"))))
+         "0ihjadp2sb8w312a276skfjsljm3y41bjscbxf79wn23gi00giz1"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("unzip" ,unzip)))
-    (home-page "http://glm.g-truc.net")
+    (home-page "https://glm.g-truc.net/")
     (synopsis "OpenGL Mathematics library")
     (description "OpenGL Mathematics (GLM) is a header-only C++ mathematics
 library for graphics software based on the OpenGL Shading Language (GLSL)

gnu/packages/maven.scm

@@ -428,7 +428,7 @@ artifact and repository handling code.")
        ("java-eclipse-jetty-server-9.2" ,java-eclipse-jetty-server-9.2)
        ("java-eclipse-jetty-servlet-9.2" ,java-eclipse-jetty-servlet-9.2)
        ("java-slf4j-api" ,java-slf4j-api)
-       ("java-tomcat" ,java-tomcat)
+       ("java-javaee-servletapi" ,java-javaee-servletapi)
        ("maven-wagon-provider-api" ,maven-wagon-provider-api)))
     (synopsis "Test classes from maven-wagon")
     (description "Maven Wagon is a transport abstraction that is used in Maven's

gnu/packages/mes.scm

@@ -25,8 +25,10 @@
   #:use-module (gnu packages cross-base)
   #:use-module (gnu packages gcc)
   #:use-module (gnu packages guile)
+  #:use-module (gnu packages man)
   #:use-module (gnu packages package-management)
   #:use-module (gnu packages perl)
+  #:use-module (gnu packages texinfo)
   #:use-module (guix build-system gnu)
   #:use-module (guix download)
   #:use-module (guix git-download)
@@ -73,7 +75,7 @@ extensive examples, including parsers for the Javascript and C99 languages.")
   (let ((triplet "i686-unknown-linux-gnu"))
     (package
       (name "mes")
-      (version "0.16")
+      (version "0.16.1")
       (source (origin
                 (method url-fetch)
                 (uri (string-append "https://gitlab.com/janneke/mes"
@@ -81,7 +83,7 @@ extensive examples, including parsers for the Javascript and C99 languages.")
                                     "/mes-" version ".tar.gz"))
                 (sha256
                  (base32
-                  "0c4vz1qw767af5h615055hh8zjwwmwf5mwkb64l0l921zaa9hg2n"))))
+                  "0qghlbx2qn674q8vckxpzsd0p845kclg457bw6r25jpmslgm0bz2"))))
       (build-system gnu-build-system)
       (supported-systems '("i686-linux" "x86_64-linux"))
       (propagated-inputs
@@ -96,7 +98,9 @@ extensive examples, including parsers for the Javascript and C99 languages.")
                `(("i686-linux-binutils" ,(cross-binutils triplet))
                  ("i686-linux-gcc" ,(cross-gcc triplet)))
                '())
-         ("perl" ,perl)))               ;build-aux/gitlog-to-changelog
+         ("help2man" ,help2man)
+         ("perl" ,perl)                 ;build-aux/gitlog-to-changelog
+         ("texinfo" ,texinfo)))
       (arguments
        `(#:phases
          (modify-phases %standard-phases

gnu/packages/messaging.scm

@@ -9,10 +9,10 @@
 ;;; Copyright © 2016 Andy Patterson <ajpatter@uwaterloo.ca>
 ;;; Copyright © 2016, 2017, 2018 Clément Lassieur <clement@lassieur.org>
 ;;; Copyright © 2017 Mekeor Melire <mekeor.melire@gmail.com>
-;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2017, 2018 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2017 Theodoros Foradis <theodoros@foradis.org>
-;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com>
+;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com>
 ;;; Copyright © 2018 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2018 Pierre-Antoine Rouby <contact@parouby.fr>
 ;;;
@@ -487,14 +487,14 @@ compromised.")
 (define-public znc
   (package
     (name "znc")
-    (version "1.7.0")
+    (version "1.7.1")
     (source (origin
               (method url-fetch)
               (uri (string-append "http://znc.in/releases/archive/znc-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0vxra50418bsjfdpf8vl70fijv8syvasjqdxfyjliff6k91k2zn0"))))
+                "1i1r1lh9q2mr1bg520zrvrlwhrhy6wibrin78wjxq1gab1qymks4"))))
     ;; TODO: autotools support has been deprecated, and new features like i18n
     ;; are only supported when building with cmake.
     (build-system gnu-build-system)
@@ -873,7 +873,7 @@ protocols.")
 (define-public c-toxcore
   (package
     (name "c-toxcore")
-    (version "0.2.2")
+    (version "0.2.4")
     (source
      (origin
        (method url-fetch)
@@ -882,7 +882,7 @@ protocols.")
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
         (base32
-         "18bfqx0ylbas9gs91rkspf04l5fjjcl0mxm1gfs2d59bv65mvcm3"))))
+         "0sdszy079f82ncrgq1wsjpk2374n5hm4las75gj3lrdhljl15izl"))))
     (arguments
      `(#:tests? #f)) ; FIXME: Testsuite seems to stay stuck on test 3. Disable
                      ; for now.
@@ -961,14 +961,14 @@ instant messenger with audio and video chat capabilities.")
 (define-public qtox
   (package
     (name "qtox")
-    (version "1.16.1")
+    (version "1.16.3")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/qTox/qTox/archive/v"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "11l4klw0g6j4qq95krgyd0npxmmpcgk4vp9jq429sbsqn1s039j4"))
+                "10n3cgw9xaqin9la8wpd8v83bkjmimicgbyp5ninsdgsrgky4hmq"))
               (file-name (string-append name "-" version ".tar.gz"))))
     (build-system cmake-build-system)
     (arguments
@@ -990,7 +990,7 @@ instant messenger with audio and video chat capabilities.")
                    ,(list (string-append (assoc-ref inputs "qtsvg")
                                          "/lib/qt5/plugins/"))))))))))
     (inputs
-     `(("ffmpeg" ,ffmpeg-3.4)
+     `(("ffmpeg" ,ffmpeg)
        ("filteraudio" ,filteraudio)
        ("glib" ,glib)
        ("gtk+" ,gtk+-2)
@@ -1644,4 +1644,77 @@ c-toxcore and ncurses.  It provides audio calls, sound and desktop
 notifications, and Python scripting support.")
     (license license:gpl3+)))
 
+(define-public libqmatrixclient
+  (package
+    (name "libqmatrixclient")
+    (version "0.3.0.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://github.com/QMatrixClient/libqmatrixclient/archive/v"
+                           version ".tar.gz"))
+       (file-name (string-append name "-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0yl7lw0s2z98xkxbklkb3i8xcd9af9qayl1zxl070d8ykl6ayqy3"))))
+    (build-system cmake-build-system)
+    (inputs
+     `(("qt" ,qt)))
+    (arguments
+     `(#:configure-flags (list "-DBUILD_SHARED_LIBS=ON")
+       #:tests? #f)) ; No tests
+    (home-page "https://matrix.org/docs/projects/sdk/libqmatrixclient.html")
+    (synopsis "Qt5 client library for the Matrix instant messaging protocol")
+    (description "libqmatrixclient is a Qt5 library to write clients for the
+Matrix instant messaging protocol.  Quaternion is the reference client
+implementation.  Quaternion and libqmatrixclient together form the
+QMatrixClient project.")
+    (license license:lgpl2.1+)))
+
+(define-public quaternion
+  (package
+    (name "quaternion")
+    (version "0.0.9.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://github.com/QMatrixClient/Quaternion/archive/v"
+                           version ".tar.gz"))
+       (file-name (string-append name "-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0s2mpw11s2n21ds1spf94j1p2lj2px2bv5zxldlcx81ch0rb4ng8"))))
+    (build-system cmake-build-system)
+    (inputs
+     `(("libqmatrixclient" ,libqmatrixclient)
+       ("qt" ,qt)))
+    (arguments
+     `(#:tests? #f ; No tests
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'fix-libqmatrixclient-dynamic-linking
+           ;; Upstream recommends statically linking with
+           ;; libqmatrixclient. Patch the source so that we can dynamically
+           ;; link instead. In a future release, when upstream moves to
+           ;; dynamic linking, remove this phase.
+           (lambda _
+             (substitute* "CMakeLists.txt"
+               (("^add_subdirectory\\(lib\\)" all)
+                (string-append "#" all)))
+             (for-each
+              (lambda (file)
+                (substitute* file
+                  (("#include \"lib/([^\"]*)\"" all header)
+                   (string-append "#include <" header ">"))))
+              (find-files "client" "\\.(cpp|h)$"))
+             #t)))))
+    (home-page "https://matrix.org/docs/projects/client/quaternion.html")
+    (synopsis "Graphical client for the Matrix instant messaging protocol")
+    (description "Quaternion is a Qt5 desktop client for the Matrix instant
+messaging protocol.  It uses libqmatrixclient and is its reference client
+implementation.  Quaternion and libqmatriclient together form the
+QMatrixClient project.")
+    (license (list license:gpl3+ ; all source code
+                   license:lgpl3+)))) ; icons/breeze
+
 ;;; messaging.scm ends here

gnu/packages/monitoring.scm

@@ -3,6 +3,7 @@
 ;;; Copyright © 2018 Sou Bunnbu <iyzsong@member.fsf.org>
 ;;; Copyright © 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;

gnu/packages/music.scm

@@ -50,6 +50,7 @@
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system waf)
   #:use-module (guix build-system trivial)
+  #:use-module (guix build-system go)
   #:use-module (gnu packages)
   #:use-module (gnu packages algebra)
   #:use-module (gnu packages apr)
@@ -128,6 +129,8 @@
   #:use-module (gnu packages xml)
   #:use-module (gnu packages xorg)
   #:use-module (gnu packages xiph)
+  #:use-module (gnu packages golang)
+  #:use-module (gnu packages lua)
   #:use-module ((srfi srfi-1) #:select (last)))
 
 (define-public aria-maestosa
@@ -4131,3 +4134,89 @@ at @code{musicbrainz.org}.")
 It can be used in daemon mode along with the Music-on-Console (MOC) and cmus
 console music players.")
     (license license:gpl3+)))
+
+(define-public demlo
+  (let ((commit "fe9ec4c8ac2fa995ec18e6ac86d50d46df06ec01")
+        (revision "0"))
+    (package
+      (name "demlo")
+      (version (git-version "3.8" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url
+                "https://gitlab.com/ambrevar/demlo")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "1afkbqhzn6da7zaf5ab7dvyqj1izqhzprwfb4hw448fllda9bdvk"))))
+      (build-system go-build-system)
+      (native-inputs
+       `(("lua" ,lua)
+         ("go-github-com-mattn-go-isatty" ,go-github-com-mattn-go-isatty)
+         ("go-github-com-mattn-go-colorable" ,go-github-com-mattn-go-colorable)
+         ("go-github-com-aarzilli-golua" ,go-github-com-aarzilli-golua)
+         ("go-gitlab-com-ambrevar-damerau" ,go-gitlab-com-ambrevar-damerau)
+         ("go-gitlab-com-ambrevar-golua-unicode" ,go-gitlab-com-ambrevar-golua-unicode)
+         ("go-github-com-mgutz-ansi" ,go-github-com-mgutz-ansi)
+         ("go-github-com-michiwend-gomusicbrainz" ,go-github-com-michiwend-gomusicbrainz)
+         ("go-github-com-stevedonovan-luar" ,go-github-com-stevedonovan-luar)
+         ("go-github-com-wtolson-go-taglib" ,go-github-com-wtolson-go-taglib)
+         ("go-github-com-yookoala-realpath" ,go-github-com-yookoala-realpath)))
+      (inputs
+       `(("chromaprint" ,chromaprint)
+         ("ffmpeg" ,ffmpeg)))
+      (arguments
+       `(#:import-path "gitlab.com/ambrevar/demlo"
+         #:phases
+         (modify-phases %standard-phases
+           (add-after 'install 'wrap-program
+             (lambda* (#:key inputs outputs #:allow-other-keys)
+               (let ((out (assoc-ref outputs "out"))
+                     (ffmpeg (assoc-ref inputs "ffmpeg"))
+                     (chromaprint (assoc-ref inputs "chromaprint")))
+                 (wrap-program (string-append out "/bin/demlo")
+                   `("XDG_DATA_DIRS" ":" prefix (,out))
+                   `("PATH" ":" prefix
+                     ,(map (lambda (dir)
+                             (string-append dir "/bin:"
+                                            dir "/sbin"))
+                           (list ffmpeg chromaprint))))
+                 #t)))
+           (add-after 'install-source 'install-scripts
+             (lambda* (#:key outputs #:allow-other-keys)
+               (let* ((out (assoc-ref outputs "out"))
+                      (root (string-append out "/src/gitlab.com/ambrevar/demlo"))
+                      (xdg-data-dirs (string-append out "/demlo")))
+                 (copy-recursively (string-append root "/actions")
+                                   (string-append xdg-data-dirs "/actions"))
+                 (copy-recursively (string-append root "/scripts")
+                                   (string-append xdg-data-dirs "/scripts"))
+                 (install-file (string-append root "/config.lua") xdg-data-dirs)
+                 ;; TODO: Test fish completion.
+                 (install-file (string-append root "/completion/demlo.fish")
+                               (string-append out "/share/fish/vendor_completions.d"))
+                 #t))))))
+      (home-page "https://gitlab.com/ambrevar/demlo")
+      (synopsis "Dynamic and extensible music library organizer")
+      (description "Demlo is a music library organizer.  It can encode, fix
+case, change folder hierarchy according to tags or file properties, tag from
+an online database, copy covers while ignoring duplicates or those below a
+quality threshold, and much more.  It makes it possible to manage your
+libraries uniformly and dynamically.  You can write your own rules to fit your
+needs best.
+
+Demlo can address any of these recurring music library issues (and much more):
+
+@itemize
+@item Fix the lack of folder structure.
+@item Normalize tags, fix their case, chose which tags to keep and which to
+discard.
+@item Handle lossy and lossless audio differently.
+@item Handle mp3 id3tags hell...
+@item Handle multiple covers, whether embedded and/or external, resize covers,
+discard bad quality ones.
+@end itemize\n")
+      (license license:expat))))

gnu/packages/networking.scm

@@ -22,6 +22,7 @@
 ;;; Copyright © 2018 Fis Trivial <ybbs.daans@hotmail.com>
 ;;; Copyright © 2018 Tonton <tonton@riseup.net>
 ;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org>
+;;; Copyright © 2018 Theodoros Foradis <theodoros@foradis.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -315,6 +316,35 @@ more.")
 between different versions of ØMQ.")
     (license license:mpl2.0)))
 
+(define-public cppzmq
+  (let ((revision "0")
+        (commit "d9f0f016c07046742738c65e1eb84722ae32d7d4"))
+    (package
+      (name "cppzmq")
+      (version (string-append "4.2.2-" revision "."
+                              (string-take commit 7)))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/zeromq/cppzmq")
+                      (commit commit)))
+                (sha256
+                 (base32
+                  "1gmqlm00y6xpa5m6d4ajq3ww63n2w7h4sy997wj81vcqmqx45b1f"))
+                (file-name (string-append name "-" version "-checkout"))))
+      (build-system cmake-build-system)
+      (arguments '(#:tests? #f)) ; No tests.
+      (native-inputs
+       `(("pkg-config" ,pkg-config)))
+      (inputs
+       `(("zeromq" ,zeromq)))
+      (home-page "http://zeromq.org")
+      (synopsis "C++ bindings for the ØMQ messaging library")
+      (description
+       "This package provides header-only C++ bindings for ØMQ.  The header
+files contain direct mappings of the abstractions provided by the ØMQ C API.")
+      (license license:expat))))
+
 (define-public librdkafka
   (package
     (name "librdkafka")
@@ -504,7 +534,7 @@ and up to 1 Mbit/s downstream.")
 (define-public whois
   (package
     (name "whois")
-    (version "5.3.1")
+    (version "5.3.2")
     (source
      (origin
        (method url-fetch)
@@ -512,7 +542,7 @@ and up to 1 Mbit/s downstream.")
                            name "_" version ".tar.xz"))
        (sha256
         (base32
-         "0gl98l26dcgmlap0pxllbv4b9n2fr5b7zml3ijf8sf3a60qsskpg"))))
+         "0m3352d5b0ragygbqjbaimghrbx4va2rixa34j5a1g3jj6l4nwbr"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f                      ; no test suite

gnu/packages/package-management.scm

@@ -101,8 +101,8 @@
   ;; Note: the 'update-guix-package.scm' script expects this definition to
   ;; start precisely like this.
   (let ((version "0.15.0")
-        (commit "4876bc8234095e2af191b0c6470455ce67d9f5f7")
+        (commit "8bbb79cf95a07a40950448a8a09d888254404ed4")
-        (revision 1))
+        (revision 2))
     (package
       (name "guix")
 
@@ -118,7 +118,7 @@
                       (commit commit)))
                 (sha256
                  (base32
-                  "0qw0ffrxzxfk76pp38kx222ndpsv9mbhlmfycagyipgypgjdd9lq"))
+                  "0h83l91v2cg9bb78c7vqx9wj71ckz22jbjmm2fy4vqs9216jnvc0"))
                 (file-name (string-append "guix-" version "-checkout"))))
       (build-system gnu-build-system)
       (arguments
@@ -263,7 +263,10 @@
 
          ("sqlite" ,sqlite)
          ("libgcrypt" ,libgcrypt)
-         ("guile" ,guile-2.2)
+
+         ;; Use 2.2.4 to avoid various thread-safety issues while building
+         ;; code in parallel.
+         ("guile" ,guile-2.2.4)
 
          ;; Many tests rely on the 'guile-bootstrap' package, which is why we
          ;; have it here.
@@ -345,7 +348,7 @@ the Nix package manager.")
                (let ((out (assoc-ref outputs "out")))
                  (substitute* (find-files (string-append out "/libexec"))
                    (("exec \".*/bin/guix\"")
-                    "exec ~root/.config/current/bin/guix"))
+                    "exec ~root/.config/guix/current/bin/guix"))
                  #t)))
            (delete 'wrap-program)))))))
 

gnu/packages/patches/bind-CVE-2018-5738.patch

@@ -1,100 +0,0 @@
-Fix CVE-2018-5738:
-
-https://kb.isc.org/article/AA-01616/0/CVE-2018-5738
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-5738
-
-diff --git a/bin/named/server.c b/bin/named/server.c
-index f63554e..847c4ff 100644
---- a/bin/named/server.c
-+++ b/bin/named/server.c
-@@ -3725,10 +3725,6 @@ configure_view(dns_view_t *view, dns_viewlist_t *viewlist,
- 	CHECKM(named_config_getport(config, &port), "port");
- 	dns_view_setdstport(view, port);
- 
--	CHECK(configure_view_acl(vconfig, config, named_g_config,
--				 "allow-query", NULL, actx,
--				 named_g_mctx, &view->queryacl));
--
- 	/*
- 	 * Make the list of response policy zone names for a view that
- 	 * is used for real lookups and so cares about hints.
-@@ -4692,21 +4688,35 @@ configure_view(dns_view_t *view, dns_viewlist_t *viewlist,
- 				 "allow-query-cache-on", NULL, actx,
- 				 named_g_mctx, &view->cacheonacl));
- 	/*
--	 * Set "allow-query-cache", "allow-recursion", and
--	 * "allow-recursion-on" acls if configured in named.conf.
--	 * (Ignore the global defaults for now, because these ACLs
--	 * can inherit from each other when only some of them set at
--	 * the options/view level.)
-+	 * Set the "allow-query", "allow-query-cache", "allow-recursion",
-+	 * and "allow-recursion-on" ACLs if configured in named.conf, but
-+	 * NOT from the global defaults. This is done by leaving the third
-+	 * argument to configure_view_acl() NULL.
-+	 *
-+	 * We ignore the global defaults here because these ACLs
-+	 * can inherit from each other.  If any are still unset after
-+	 * applying the inheritance rules, we'll look up the defaults at
-+	 * that time.
- 	 */
--	CHECK(configure_view_acl(vconfig, config, NULL, "allow-query-cache",
--				 NULL, actx, named_g_mctx, &view->cacheacl));
-+
-+	/* named.conf only */
-+	CHECK(configure_view_acl(vconfig, config, NULL,
-+				 "allow-query", NULL, actx,
-+				 named_g_mctx, &view->queryacl));
-+
-+	/* named.conf only */
-+	CHECK(configure_view_acl(vconfig, config, NULL,
-+				 "allow-query-cache", NULL, actx,
-+				 named_g_mctx, &view->cacheacl));
- 
- 	if (strcmp(view->name, "_bind") != 0 &&
- 	    view->rdclass != dns_rdataclass_chaos)
- 	{
-+		/* named.conf only */
- 		CHECK(configure_view_acl(vconfig, config, NULL,
- 					 "allow-recursion", NULL, actx,
- 					 named_g_mctx, &view->recursionacl));
-+		/* named.conf only */
- 		CHECK(configure_view_acl(vconfig, config, NULL,
- 					 "allow-recursion-on", NULL, actx,
- 					 named_g_mctx, &view->recursiononacl));
-@@ -4744,18 +4754,21 @@ configure_view(dns_view_t *view, dns_viewlist_t *viewlist,
- 		 * the global config.
- 		 */
- 		if (view->recursionacl == NULL) {
-+			/* global default only */
- 			CHECK(configure_view_acl(NULL, NULL, named_g_config,
- 						 "allow-recursion", NULL,
- 						 actx, named_g_mctx,
- 						 &view->recursionacl));
- 		}
- 		if (view->recursiononacl == NULL) {
-+			/* global default only */
- 			CHECK(configure_view_acl(NULL, NULL, named_g_config,
- 						 "allow-recursion-on", NULL,
- 						 actx, named_g_mctx,
- 						 &view->recursiononacl));
- 		}
- 		if (view->cacheacl == NULL) {
-+			/* global default only */
- 			CHECK(configure_view_acl(NULL, NULL, named_g_config,
- 						 "allow-query-cache", NULL,
- 						 actx, named_g_mctx,
-@@ -4769,6 +4782,14 @@ configure_view(dns_view_t *view, dns_viewlist_t *viewlist,
- 		CHECK(dns_acl_none(mctx, &view->cacheacl));
- 	}
- 
-+	if (view->queryacl == NULL) {
-+		/* global default only */
-+		CHECK(configure_view_acl(NULL, NULL, named_g_config,
-+					 "allow-query", NULL,
-+					 actx, named_g_mctx,
-+					 &view->queryacl));
-+	}
-+
- 	/*
- 	 * Ignore case when compressing responses to the specified
- 	 * clients. This causes case not always to be preserved,

gnu/packages/patches/file-CVE-2017-1000249.patch

@@ -1,27 +0,0 @@
-https://github.com/file/file/commit/35c94dc6acc418f1ad7f6241a6680e5327495793.patch
-http://openwall.com/lists/oss-security/2017/09/05/3
-
-The patch is minorly modified to apply to file-5.30
-
-From 35c94dc6acc418f1ad7f6241a6680e5327495793 Mon Sep 17 00:00:00 2001
-From: Christos Zoulas <christos@zoulas.com>
-Date: Sun, 27 Aug 2017 07:55:02 +0000
-Subject: [PATCH] Fix always true condition (Thomas Jarosch)
-
----
- src/readelf.c | 4 ++--
- 1 file changed, 2 insertions(+), 2 deletions(-)
-
-diff --git a/src/readelf.c b/src/readelf.c
-index 81451827..5f425c97 100644
---- a/src/readelf.c
-+++ b/src/readelf.c
-@@ -511,7 +511,7 @@ do_bid_note(struct magic_set *ms, unsigned char *nbuf, uint32_t type,
-     size_t noff, size_t doff, int *flags)
- {
- 	if (namesz == 4 && strcmp((char *)&nbuf[noff], "GNU") == 0 &&
--	    type == NT_GNU_BUILD_ID && (descsz >= 4 || descsz <= 20)) {
-+	    type == NT_GNU_BUILD_ID && (descsz >= 4 && descsz <= 20)) {
- 		uint8_t desc[20];
- 		const char *btype;
- 		uint32_t i;

gnu/packages/patches/fltk-shared-lib-defines.patch

@@ -1,51 +0,0 @@
-This patch from upstream revision 10588.
-
---- fltk-1.3.3/src/Xutf8.h
-+++ fltk-1.3.3/src/Xutf8.h
-@@ -25,6 +25,7 @@
- #include <X11/Xlib.h>
- #include <X11/Xlocale.h>
- #include <X11/Xutil.h>
-+#include <FL/Fl_Export.H>
- 
- typedef struct {
- 	int nb_font;
-@@ -98,8 +99,8 @@
- 	XUtf8FontStruct  *font_set,
- 	unsigned int            ucs);
- 
--int
--XGetUtf8FontAndGlyph(
-+FL_EXPORT int
-+fl_XGetUtf8FontAndGlyph(
-         XUtf8FontStruct  *font_set,
-         unsigned int            ucs,
-         XFontStruct     **fnt,
---- fltk-1.3.3/src/gl_draw.cxx
-+++ fltk-1.3.3/src/gl_draw.cxx
-@@ -114,7 +114,7 @@
-   for (int i = 0; i < 0x400; i++) {
-     XFontStruct *font = NULL;
-     unsigned short id;
--    XGetUtf8FontAndGlyph(gl_fontsize->font, ii, &font, &id);
-+    fl_XGetUtf8FontAndGlyph(gl_fontsize->font, ii, &font, &id);
-     if (font) glXUseXFont(font->fid, id, 1, gl_fontsize->listbase+ii);
-     ii++;
-    }
---- fltk-1.3.3/src/xutf8/utf8Wrap.c
-+++ fltk-1.3.3/src/xutf8/utf8Wrap.c
-@@ -816,10 +816,10 @@
- /**  get the X font and glyph ID of a UCS char                              **/
- /*****************************************************************************/
- int
--XGetUtf8FontAndGlyph(XUtf8FontStruct  *font_set,
--		     unsigned int     ucs,
--		     XFontStruct      **fnt,
--		     unsigned short   *id) {
-+fl_XGetUtf8FontAndGlyph(XUtf8FontStruct  *font_set,
-+			unsigned int     ucs,
-+			XFontStruct      **fnt,
-+			unsigned short   *id) {
- 
-   /* int             x; */
-   int             *encodings; /* encodings array */

gnu/packages/patches/fltk-xfont-on-demand.patch

@@ -1,45 +0,0 @@
-Fixes undefined reference to `Fl_XFont_On_Demand::value()'.
-From <http://www.fltk.org/str.php?L3156+P0+S0+C0+I0+E0+V1+QOn_Demand>.
-
-Index: src/fl_font.cxx
-===================================================================
---- fltk-1.3.3/src/fl_font.cxx	(revision 10503)
-+++ fltk-1.3.3/src/fl_font.cxx	(revision 10504)
-@@ -55,6 +55,12 @@
- #  include "fl_font_x.cxx"
- #endif // WIN32
- 
-+#if ! (defined(WIN32) || defined(__APPLE__))
-+XFontStruct *fl_X_core_font()
-+{
-+  return fl_xfont.value();
-+}
-+#endif
- 
- double fl_width(const char* c) {
-   if (c) return fl_width(c, (int) strlen(c));
-Index: src/gl_draw.cxx
-===================================================================
---- fltk-1.3.3/src/gl_draw.cxx	(revision 10503)
-+++ fltk-1.3.3/src/gl_draw.cxx	(revision 10504)
-@@ -81,7 +81,7 @@
-  * then sorting through them at draw time (for normal X rendering) to find which one can
-  * render the current glyph... But for now, just use the first font in the list for GL...
-  */
--    XFontStruct *font = fl_xfont;
-+    XFontStruct *font = fl_X_core_font();
-     int base = font->min_char_or_byte2;
-     int count = font->max_char_or_byte2-base+1;
-     fl_fontsize->listbase = glGenLists(256);
-Index: FL/x.H
-===================================================================
---- fltk-1.3.3/FL/x.H	(revision 10503)
-+++ fltk-1.3.3/FL/x.H	(revision 10504)
-@@ -132,6 +132,7 @@
-   XFontStruct *ptr;
- };
- extern FL_EXPORT Fl_XFont_On_Demand fl_xfont;
-+extern FL_EXPORT XFontStruct* fl_X_core_font();
- 
- // this object contains all X-specific stuff about a window:
- // Warning: this object is highly subject to change!  

gnu/packages/patches/ghostscript-CVE-2018-10194.patch

@@ -0,0 +1,52 @@
+Fix CVE-2018-10194:
+
+https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-10194
+https://bugs.ghostscript.com/show_bug.cgi?id=699255
+
+Patch copied from upstream source repository:
+
+https://git.ghostscript.com/?p=ghostpdl.git;a=commit;h=39b1e54b2968620723bf32e96764c88797714879
+
+From 39b1e54b2968620723bf32e96764c88797714879 Mon Sep 17 00:00:00 2001
+From: Ken Sharp <ken.sharp@artifex.com>
+Date: Wed, 18 Apr 2018 15:46:32 +0100
+Subject: [PATCH] pdfwrite - Guard against trying to output an infinite number
+
+Bug #699255 " Buffer overflow on pprintg1 due to mishandle postscript file data to pdf"
+
+The file uses an enormous parameter to xyxhow, causing an overflow in
+the calculation of text positioning (value > 1e39).
+
+Since this is basically a nonsense value, and PostScript only supports
+real values up to 1e38, this patch follows the same approach as for
+a degenerate CTM, and treats it as 0.
+
+Adobe Acrobat Distiller throws a limitcheck error, so we could do that
+instead if this approach proves to be a problem.
+---
+ devices/vector/gdevpdts.c | 7 ++++++-
+ 1 file changed, 6 insertions(+), 1 deletion(-)
+
+diff --git a/devices/vector/gdevpdts.c b/devices/vector/gdevpdts.c
+index 848ad781f..172fe6bc3 100644
+--- a/devices/vector/gdevpdts.c
++++ b/devices/vector/gdevpdts.c
+@@ -103,9 +103,14 @@ append_text_move(pdf_text_state_t *pts, double dw)
+ static int
+ set_text_distance(gs_point *pdist, double dx, double dy, const gs_matrix *pmat)
+ {
+-    int code = gs_distance_transform_inverse(dx, dy, pmat, pdist);
++    int code;
+     double rounded;
+ 
++    if (dx > 1e38 || dy > 1e38)
++        code = gs_error_undefinedresult;
++    else
++        code = gs_distance_transform_inverse(dx, dy, pmat, pdist);
++
+     if (code == gs_error_undefinedresult) {
+         /* The CTM is degenerate.
+            Can't know the distance in user space.
+-- 
+2.18.0
+

gnu/packages/patches/mariadb-gcc-ice.patch

@@ -0,0 +1,24 @@
+Work around this GCC ICE: <https://bugs.gnu.org/31708>.  It shows up
+only when doing native compiles on armhf-linux.
+
+--- mariadb-10.1.33/plugin/semisync/semisync_master.cc	2018-07-28 02:13:12.604020250 +0200
++++ mariadb-10.1.33/plugin/semisync/semisync_master.cc	2018-07-28 02:14:11.907753417 +0200
+@@ -847,6 +847,8 @@
+   return function_exit(kWho, 0);
+ }
+ 
++volatile const void *kSyncHeaderPtr = &ReplSemiSyncMaster::kSyncHeader;
++
+ int ReplSemiSyncMaster::reserveSyncHeader(unsigned char *header,
+ 					  unsigned long size)
+ {
+@@ -873,7 +875,7 @@
+     /* Set the magic number and the sync status.  By default, no sync
+      * is required.
+      */
+-    memcpy(header, kSyncHeader, sizeof(kSyncHeader));
++    memcpy(header, (void *)kSyncHeaderPtr, sizeof(kSyncHeader));
+     hlen= sizeof(kSyncHeader);
+   }
+   return function_exit(kWho, hlen);
+

gnu/packages/patches/monero-use-system-miniupnpc.patch

@@ -0,0 +1,111 @@
+This reverts commit 1e20d705e7c64d2b17c031f345057d1e8850fafa, so that it's possible to use our own
+miniupnpc, instead of a git submodule.
+---
+ CMakeLists.txt          |  8 ++++++++
+ external/CMakeLists.txt | 41 +++++++++++++++++++++++++++++++----------
+ src/p2p/net_node.inl    | 13 ++++++++++---
+ 3 files changed, 49 insertions(+), 13 deletions(-)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 3b93988e..ef948885 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -430,6 +430,14 @@ include_directories("${CMAKE_CURRENT_BINARY_DIR}/translations")
+ 
+ add_subdirectory(external)
+ 
++# Final setup for miniupnpc
++if(UPNP_STATIC OR IOS)
++  add_definitions("-DUPNP_STATIC")
++else()
++  add_definitions("-DUPNP_DYNAMIC")
++  include_directories(${UPNP_INCLUDE})
++endif()
++
+ # Final setup for libunbound
+ include_directories(${UNBOUND_INCLUDE})
+ link_directories(${UNBOUND_LIBRARY_DIRS})
+diff --git a/external/CMakeLists.txt b/external/CMakeLists.txt
+index 1fc4d64c..b4f712ee 100644
+--- a/external/CMakeLists.txt
++++ b/external/CMakeLists.txt
+@@ -34,21 +34,42 @@
+ # We always compile if we are building statically to reduce static dependency issues...
+ # ...except for FreeBSD, because FreeBSD is a special case that doesn't play well with
+ # others.
++if(NOT IOS)
++    find_package(Miniupnpc QUIET)
++endif()
+ 
+-find_package(Miniupnpc REQUIRED)
++# If we have the correct shared version and we're not building static, use it
++if(STATIC OR IOS)
++ set(USE_SHARED_MINIUPNPC false)
++elseif(MINIUPNP_FOUND AND MINIUPNPC_VERSION_1_7_OR_HIGHER)
++ set(USE_SHARED_MINIUPNPC true)
++endif()
+ 
+-message(STATUS "Using in-tree miniupnpc")
++if(USE_SHARED_MINIUPNPC)
++  message(STATUS "Using shared miniupnpc found at ${MINIUPNP_INCLUDE_DIR}")
+ 
+-add_subdirectory(miniupnp/miniupnpc)
++  set(UPNP_STATIC false PARENT_SCOPE)
++  set(UPNP_INCLUDE ${MINIUPNP_INCLUDE_DIR} PARENT_SCOPE)
++  set(UPNP_LIBRARIES ${MINIUPNP_LIBRARY} PARENT_SCOPE)
++else()
++  if(STATIC)
++    message(STATUS "Using miniupnpc from local source tree for static build")
++  else()
++    message(STATUS "Using miniupnpc from local source tree (/external/miniupnp/miniupnpc)")
++  endif()
+ 
+-set_property(TARGET libminiupnpc-static PROPERTY FOLDER "external")
+-if(MSVC)
+-  set_property(TARGET libminiupnpc-static APPEND_STRING PROPERTY COMPILE_FLAGS " -wd4244 -wd4267")
+-elseif(NOT MSVC)
+-  set_property(TARGET libminiupnpc-static APPEND_STRING PROPERTY COMPILE_FLAGS " -Wno-undef -Wno-unused-result -Wno-unused-value")
+-endif()
++  add_subdirectory(miniupnp/miniupnpc)
++
++  set_property(TARGET libminiupnpc-static PROPERTY FOLDER "external")
++  if(MSVC)
++    set_property(TARGET libminiupnpc-static APPEND_STRING PROPERTY COMPILE_FLAGS " -wd4244 -wd4267")
++  elseif(NOT MSVC)
++    set_property(TARGET libminiupnpc-static APPEND_STRING PROPERTY COMPILE_FLAGS " -Wno-undef -Wno-unused-result -Wno-unused-value")
++  endif()
+ 
+-set(UPNP_LIBRARIES "libminiupnpc-static" PARENT_SCOPE)
++  set(UPNP_STATIC true PARENT_SCOPE)
++  set(UPNP_LIBRARIES "libminiupnpc-static" PARENT_SCOPE)
++endif()
+ 
+ find_package(Unbound)
+ 
+diff --git a/src/p2p/net_node.inl b/src/p2p/net_node.inl
+index 9b21705e..76340a22 100644
+--- a/src/p2p/net_node.inl
++++ b/src/p2p/net_node.inl
+@@ -49,9 +49,16 @@
+ #include "storages/levin_abstract_invoke2.h"
+ #include "cryptonote_core/cryptonote_core.h"
+ 
+-#include <miniupnp/miniupnpc/miniupnpc.h>
+-#include <miniupnp/miniupnpc/upnpcommands.h>
+-#include <miniupnp/miniupnpc/upnperrors.h>
++// We have to look for miniupnpc headers in different places, dependent on if its compiled or external
++#ifdef UPNP_STATIC
++  #include <miniupnp/miniupnpc/miniupnpc.h>
++  #include <miniupnp/miniupnpc/upnpcommands.h>
++  #include <miniupnp/miniupnpc/upnperrors.h>
++#else
++  #include "miniupnpc.h"
++  #include "upnpcommands.h"
++  #include "upnperrors.h"
++#endif
+ 
+ #undef MONERO_DEFAULT_LOG_CATEGORY
+ #define MONERO_DEFAULT_LOG_CATEGORY "net.p2p"
+-- 
+2.16.2
+

gnu/packages/patches/openbabel-fix-crash-on-nwchem-output.patch

@@ -0,0 +1,34 @@
+From 52cea818bf68f8a2d3c48d55d00c2f8b7da25e4c Mon Sep 17 00:00:00 2001
+From: Daniel Hogan <daniel.hogan@usask.ca>
+Date: Tue, 28 Mar 2017 22:21:18 -0600
+Subject: [PATCH] Remove delete statement.
+
+When from_scratch is true, coordinates is not allocated. A separate if
+statement was added to handle the case when from_scratch is true that
+does not try to free coordinates.
+---
+ src/formats/nwchemformat.cpp | 9 ++++++---
+ 1 file changed, 6 insertions(+), 3 deletions(-)
+
+diff --git a/src/formats/nwchemformat.cpp b/src/formats/nwchemformat.cpp
+index 6f625ad5b..79298555f 100644
+--- a/src/formats/nwchemformat.cpp
++++ b/src/formats/nwchemformat.cpp
+@@ -232,11 +232,14 @@ static const char* OPTIMIZATION_END_PATTERN = "  Optimization converged";
+           break;
+         tokenize(vs,buffer);
+     }
+-    if ((from_scratch)||(i != natoms))
+-      {
++    if (from_scratch) 
++    {
++        return;
++    }
++    if (i != natoms) {
+         delete[] coordinates;
+         return;
+-      }
++    }
+     molecule->AddConformer(coordinates);
+   }
+ 

gnu/packages/patches/openscenegraph-ffmpeg3.patch

@@ -1,156 +0,0 @@
-Description: Replace deprecated FFmpeg API
-Author: Andreas Cadhalpun <Andreas.Cadhalpun@googlemail.com>
-See <http://forum.openscenegraph.org/viewtopic.php?t=15832>.
---- a/src/osgPlugins/ffmpeg/FFmpegDecoderVideo.cpp
-+++ b/src/osgPlugins/ffmpeg/FFmpegDecoderVideo.cpp
-@@ -71,7 +71,7 @@ void FFmpegDecoderVideo::open(AVStream *
-     findAspectRatio();
- 
-     // Find out whether we support Alpha channel
--    m_alpha_channel = (m_context->pix_fmt == PIX_FMT_YUVA420P);
-+    m_alpha_channel = (m_context->pix_fmt == AV_PIX_FMT_YUVA420P);
- 
-     // Find out the framerate
-     m_frame_rate = av_q2d(stream->avg_frame_rate);
-@@ -91,20 +91,19 @@ void FFmpegDecoderVideo::open(AVStream *
-         throw std::runtime_error("avcodec_open() failed");
- 
-     // Allocate video frame
--    m_frame.reset(avcodec_alloc_frame());
-+    m_frame.reset(av_frame_alloc());
- 
-     // Allocate converted RGB frame
--    m_frame_rgba.reset(avcodec_alloc_frame());
--    m_buffer_rgba[0].resize(avpicture_get_size(PIX_FMT_RGB24, width(), height()));
-+    m_frame_rgba.reset(av_frame_alloc());
-+    m_buffer_rgba[0].resize(avpicture_get_size(AV_PIX_FMT_RGB24, width(), height()));
-     m_buffer_rgba[1].resize(m_buffer_rgba[0].size());
- 
-     // Assign appropriate parts of the buffer to image planes in m_frame_rgba
--    avpicture_fill((AVPicture *) (m_frame_rgba).get(), &(m_buffer_rgba[0])[0], PIX_FMT_RGB24, width(), height());
-+    avpicture_fill((AVPicture *) (m_frame_rgba).get(), &(m_buffer_rgba[0])[0], AV_PIX_FMT_RGB24, width(), height());
- 
-     // Override get_buffer()/release_buffer() from codec context in order to retrieve the PTS of each frame.
-     m_context->opaque = this;
--    m_context->get_buffer = getBuffer;
--    m_context->release_buffer = releaseBuffer;
-+    m_context->get_buffer2 = getBuffer;
- }
- 
- 
-@@ -263,8 +262,8 @@ int FFmpegDecoderVideo::convert(AVPictur
- #ifdef USE_SWSCALE
-     if (m_swscale_ctx==0)
-     {
--        m_swscale_ctx = sws_getContext(src_width, src_height, (PixelFormat) src_pix_fmt,
--                                      src_width, src_height, (PixelFormat) dst_pix_fmt,
-+        m_swscale_ctx = sws_getContext(src_width, src_height, (AVPixelFormat) src_pix_fmt,
-+                                      src_width, src_height, (AVPixelFormat) dst_pix_fmt,
-                                       /*SWS_BILINEAR*/ SWS_BICUBIC, NULL, NULL, NULL);
-     }
- 
-@@ -311,14 +310,14 @@ void FFmpegDecoderVideo::publishFrame(co
-     AVPicture * const dst = (AVPicture *) m_frame_rgba.get();
- 
-     // Assign appropriate parts of the buffer to image planes in m_frame_rgba
--    avpicture_fill((AVPicture *) (m_frame_rgba).get(), &(m_buffer_rgba[m_writeBuffer])[0], PIX_FMT_RGB24, width(), height());
-+    avpicture_fill((AVPicture *) (m_frame_rgba).get(), &(m_buffer_rgba[m_writeBuffer])[0], AV_PIX_FMT_RGB24, width(), height());
- 
-     // Convert YUVA420p (i.e. YUV420p plus alpha channel) using our own routine
- 
--    if (m_context->pix_fmt == PIX_FMT_YUVA420P)
-+    if (m_context->pix_fmt == AV_PIX_FMT_YUVA420P)
-         yuva420pToRgba(dst, src, width(), height());
-     else
--        convert(dst, PIX_FMT_RGB24, src, m_context->pix_fmt, width(), height());
-+        convert(dst, AV_PIX_FMT_RGB24, src, m_context->pix_fmt, width(), height());
- 
-     // Wait 'delay' seconds before publishing the picture.
-     int i_delay = static_cast<int>(delay * 1000000 + 0.5);
-@@ -345,7 +344,7 @@ void FFmpegDecoderVideo::publishFrame(co
- 
- void FFmpegDecoderVideo::yuva420pToRgba(AVPicture * const dst, AVPicture * const src, int width, int height)
- {
--    convert(dst, PIX_FMT_RGB24, src, m_context->pix_fmt, width, height);
-+    convert(dst, AV_PIX_FMT_RGB24, src, m_context->pix_fmt, width, height);
- 
-     const size_t bpp = 4;
- 
-@@ -363,31 +362,28 @@ void FFmpegDecoderVideo::yuva420pToRgba(
-     }
- }
- 
--
--
--int FFmpegDecoderVideo::getBuffer(AVCodecContext * const context, AVFrame * const picture)
-+int FFmpegDecoderVideo::getBuffer(AVCodecContext * const context, AVFrame * const picture, int flags)
- {
-+    AVBufferRef *ref;
-     const FFmpegDecoderVideo * const this_ = reinterpret_cast<const FFmpegDecoderVideo*>(context->opaque);
- 
--    const int result = avcodec_default_get_buffer(context, picture);
-+    const int result = avcodec_default_get_buffer2(context, picture, flags);
-     int64_t * p_pts = reinterpret_cast<int64_t*>( av_malloc(sizeof(int64_t)) );
- 
-     *p_pts = this_->m_packet_pts;
-     picture->opaque = p_pts;
- 
-+    ref = av_buffer_create((uint8_t *)picture->opaque, sizeof(int64_t), FFmpegDecoderVideo::freeBuffer, picture->buf[0], flags);
-+    picture->buf[0] = ref;
-+
-     return result;
- }
- 
--
--
--void FFmpegDecoderVideo::releaseBuffer(AVCodecContext * const context, AVFrame * const picture)
-+void FFmpegDecoderVideo::freeBuffer(void *opaque, uint8_t *data)
- {
--    if (picture != 0)
--        av_freep(&picture->opaque);
--
--    avcodec_default_release_buffer(context, picture);
-+    AVBufferRef *ref = (AVBufferRef *)opaque;
-+    av_buffer_unref(&ref);
-+    av_free(data);
- }
- 
--
--
- } // namespace osgFFmpeg
---- a/src/osgPlugins/ffmpeg/FFmpegDecoderVideo.hpp
-+++ b/src/osgPlugins/ffmpeg/FFmpegDecoderVideo.hpp
-@@ -94,8 +94,8 @@ private:
-                 int src_pix_fmt, int src_width, int src_height);
- 
- 
--    static int getBuffer(AVCodecContext * context, AVFrame * picture);
--    static void releaseBuffer(AVCodecContext * context, AVFrame * picture);
-+    static int getBuffer(AVCodecContext * context, AVFrame * picture, int flags);
-+    static void freeBuffer(void * opaque, uint8_t *data);
- 
-     PacketQueue &           m_packets;
-     FFmpegClocks &          m_clocks;
---- a/src/osgPlugins/ffmpeg/FFmpegParameters.cpp
-+++ b/src/osgPlugins/ffmpeg/FFmpegParameters.cpp
-@@ -19,7 +19,7 @@ extern "C"
-     #include <libavutil/pixdesc.h>
- }
- 
--inline PixelFormat osg_av_get_pix_fmt(const char *name) { return av_get_pix_fmt(name); }
-+inline AVPixelFormat osg_av_get_pix_fmt(const char *name) { return av_get_pix_fmt(name); }
- 
- 
- namespace osgFFmpeg {
---- a/src/osgPlugins/ffmpeg/FFmpegDecoderAudio.cpp	2016-02-18 21:25:39.627923629 +0000
-+++ b/src/osgPlugins/ffmpeg/FFmpegDecoderAudio.cpp	2016-02-18 21:26:17.071140100 +0000
-@@ -227,8 +227,7 @@
-         if (avcodec_open2(m_context, p_codec, NULL) < 0)
-             throw std::runtime_error("avcodec_open() failed");
- 
--        m_context->get_buffer = avcodec_default_get_buffer;
--        m_context->release_buffer = avcodec_default_release_buffer;
-+        m_context->get_buffer2 = avcodec_default_get_buffer2;
- 
-     }
- 

gnu/packages/patches/pyqt-public-sip.patch

@@ -0,0 +1,55 @@
+https://sources.debian.org/data/main/p/pyqt5/5.11.2+dfsg-1/debian/patches/public_sip.diff
+
+From: Dmitry Shachnev <mitya57@debian.org>
+Date: Tue, 3 Jul 2018 09:46:42 +0300
+Subject: Use the public version of sip module
+
+Per https://www.debian.org/doc/debian-policy/#convenience-copies-of-code.
+---
+ configure.py | 19 +------------------
+ 1 file changed, 1 insertion(+), 18 deletions(-)
+
+diff --git a/configure.py b/configure.py
+index 7c48136..ca23f93 100644
+--- a/configure.py
++++ b/configure.py
+@@ -642,15 +642,6 @@ class TargetConfiguration:
+                     "Unable to import enum.  Please install the enum34 "
+                     "package from PyPI.")
+ 
+-        # Check there is a private copy of the sip module already installed.
+-        try:
+-            from PyQt5 import sip
+-        except ImportError:
+-            error(
+-                    "Unable to import PyQt5.sip.  Make sure you have "
+-                    "configured SIP to create a private copy of the sip "
+-                    "module.")
+-
+         # Get the details of the Python interpreter library.
+         py_major = self.py_version >> 16
+         py_minor = (self.py_version >> 8) & 0x0ff
+@@ -2438,7 +2429,7 @@ def get_sip_flags(target_config):
+     the target configuration.
+     """
+ 
+-    sip_flags = ['-n', 'PyQt5.sip']
++    sip_flags = ['-n', 'sip']
+ 
+     # If we don't check for signed interpreters, we exclude the 'VendorID'
+     # feature
+@@ -2914,14 +2905,6 @@ def check_sip(target_config):
+     target_config is the target configuration.
+     """
+ 
+-    # Check there is a private copy of the sip module already installed.
+-    try:
+-        from PyQt5 import sip
+-    except ImportError:
+-        error(
+-                "Unable to import PyQt5.sip.  Make sure you have configured "
+-                "SIP to create a private copy of the sip module.")
+-
+     if target_config.sip is None:
+         error(
+                 "Make sure you have a working sip on your PATH or use the "

gnu/packages/patches/python-cairocffi-dlopen-path.patch

@@ -0,0 +1,10 @@
+--- cairocffi-0.8.0/cairocffi/__init__.py.orig	2018-07-16 11:00:59.075664158 +0200
++++ cairocffi-0.8.0/cairocffi/__init__.py	2018-07-16 17:09:42.471958015 +0200
+@@ -35,6 +35,7 @@
+                         return lib
+             except OSError:
+                 pass
++        return ffi.dlopen(name)
+     raise OSError("dlopen() failed to load a library: %s" % ' / '.join(names))
+ 
+ 

gnu/packages/patches/quassel-qt-5.11.patch

@@ -1,72 +0,0 @@
-https://github.com/quassel/quassel/commit/92f4dca367c3a6f0536a1e0f3fbb44bb6ed4da62.patch
-This can be removed after quassel 0.12.5.
-
-From 92f4dca367c3a6f0536a1e0f3fbb44bb6ed4da62 Mon Sep 17 00:00:00 2001
-From: Manuel Nickschas <sputnick@quassel-irc.org>
-Date: Thu, 3 May 2018 23:19:34 +0200
-Subject: [PATCH] cmake: Fix build with Qt 5.11
-
-Qt 5.11 removes the qt5_use_modules function, so add a copy. If
-present, the Qt-provided function will be used instead.
-
-Closes GH-355.
----
- cmake/QuasselMacros.cmake | 38 ++++++++++++++++++++++++++++++++++++++
- 1 file changed, 38 insertions(+)
-
-diff --git a/cmake/QuasselMacros.cmake b/cmake/QuasselMacros.cmake
-index 652c0042d..d77ba1cfb 100644
---- a/cmake/QuasselMacros.cmake
-+++ b/cmake/QuasselMacros.cmake
-@@ -5,6 +5,9 @@
- # The qt4_use_modules function was taken from CMake's Qt4Macros.cmake:
- # (C) 2005-2009 Kitware, Inc.
- #
-+# The qt5_use_modules function was taken from Qt 5.10.1 (and modified):
-+# (C) 2005-2011 Kitware, Inc.
-+#
- # Redistribution and use is allowed according to the terms of the BSD license.
- # For details see the accompanying COPYING-CMAKE-SCRIPTS file.
- 
-@@ -43,6 +46,41 @@ function(qt4_use_modules _target _link_type)
-     endforeach()
- endfunction()
- 
-+# Qt 5.11 removed the qt5_use_modules function, so we need to provide it until we can switch to a modern CMake version.
-+# If present, the Qt-provided version will be used automatically instead.
-+function(qt5_use_modules _target _link_type)
-+    if (NOT TARGET ${_target})
-+        message(FATAL_ERROR "The first argument to qt5_use_modules must be an existing target.")
-+    endif()
-+    if ("${_link_type}" STREQUAL "LINK_PUBLIC" OR "${_link_type}" STREQUAL "LINK_PRIVATE" )
-+        set(_qt5_modules ${ARGN})
-+        set(_qt5_link_type ${_link_type})
-+    else()
-+        set(_qt5_modules ${_link_type} ${ARGN})
-+    endif()
-+
-+    if ("${_qt5_modules}" STREQUAL "")
-+        message(FATAL_ERROR "qt5_use_modules requires at least one Qt module to use.")
-+    endif()
-+    foreach(_module ${_qt5_modules})
-+        if (NOT Qt5${_module}_FOUND)
-+            find_package(Qt5${_module} PATHS "${_Qt5_COMPONENT_PATH}" NO_DEFAULT_PATH)
-+            if (NOT Qt5${_module}_FOUND)
-+                message(FATAL_ERROR "Can not use \"${_module}\" module which has not yet been found.")
-+            endif()
-+        endif()
-+        target_link_libraries(${_target} ${_qt5_link_type} ${Qt5${_module}_LIBRARIES})
-+        set_property(TARGET ${_target} APPEND PROPERTY INCLUDE_DIRECTORIES ${Qt5${_module}_INCLUDE_DIRS})
-+        set_property(TARGET ${_target} APPEND PROPERTY COMPILE_DEFINITIONS ${Qt5${_module}_COMPILE_DEFINITIONS})
-+        if (Qt5_POSITION_INDEPENDENT_CODE
-+                AND (CMAKE_VERSION VERSION_LESS 2.8.12
-+                    AND (NOT CMAKE_CXX_COMPILER_ID STREQUAL "GNU"
-+                    OR CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5.0)))
-+            set_property(TARGET ${_target} PROPERTY POSITION_INDEPENDENT_CODE ${Qt5_POSITION_INDEPENDENT_CODE})
-+        endif()
-+    endforeach()
-+endfunction()
-+
- # Some wrappers for simplifying dual-Qt support
- 
- function(qt_use_modules)

gnu/packages/patches/rust-bootstrap-stage0-test.patch

@@ -0,0 +1,55 @@
+Bootstrap tests failed with local stage0 cargo and rustc
+Backported changes from https://github.com/rust-lang/rust/pull/51977
+
+From 0834d9d771e912f51deca6c25699e44734624546 Mon Sep 17 00:00:00 2001
+From: Nikolai Merinov <nikolai.merinov@member.fsf.org>
+Date: Mon, 2 Jul 2018 01:45:35 +0500
+Subject: [PATCH] bootstrap: tests should use rustc from config.toml
+
+Tests should always use "rustc" and "cargo" from config.toml instead
+of assuming that stage0 binaries was downloaded to build directory.
+---
+ src/bootstrap/bootstrap.py | 2 ++
+ src/bootstrap/config.rs    | 6 ++----
+ 2 files changed, 4 insertions(+), 4 deletions(-)
+
+diff --git a/src/bootstrap/bootstrap.py b/src/bootstrap/bootstrap.py
+index 487440becf..1701f7b83a 100644
+--- a/src/bootstrap/bootstrap.py
++++ b/src/bootstrap/bootstrap.py
+@@ -788,6 +788,8 @@ def bootstrap(help_triggered):
+     env["BOOTSTRAP_PARENT_ID"] = str(os.getpid())
+     env["BOOTSTRAP_PYTHON"] = sys.executable
+     env["BUILD_DIR"] = build.build_dir
++    env["CARGO"] = build.cargo()
++    env["RUSTC"] = build.rustc()
+     run(args, env=env, verbose=build.verbose)
+ 
+ 
+diff --git a/src/bootstrap/config.rs b/src/bootstrap/config.rs
+index 6dd6291be2..d1a0deb583 100644
+--- a/src/bootstrap/config.rs
++++ b/src/bootstrap/config.rs
+@@ -23,7 +23,6 @@ use std::cmp;
+ 
+ use num_cpus;
+ use toml;
+-use util::exe;
+ use cache::{INTERNER, Interned};
+ use flags::Flags;
+ pub use flags::Subcommand;
+@@ -362,9 +361,8 @@ impl Config {
+         config.src = Config::path_from_python("SRC");
+         config.out = Config::path_from_python("BUILD_DIR");
+ 
+-        let stage0_root = config.out.join(&config.build).join("stage0/bin");
+-        config.initial_rustc = stage0_root.join(exe("rustc", &config.build));
+-        config.initial_cargo = stage0_root.join(exe("cargo", &config.build));
++        config.initial_rustc = Config::path_from_python("RUSTC");
++        config.initial_cargo = Config::path_from_python("CARGO");
+ 
+         config
+     }
+-- 
+2.17.1
+

gnu/packages/patches/rust-coresimd-doctest.patch

@@ -0,0 +1,21 @@
+Doctest coresimd::x86::__m256 failed on processors withouth "avx" feature.
+Backported patch with changes from https://github.com/rust-lang-nursery/stdsimd/issues/481
+
+--- rustc-1.26.2-src-orig/src/stdsimd/coresimd/x86/mod.rs	1970-01-01 05:00:00.000000000 +0500
++++ rustc-1.26.2-src/src/stdsimd/coresimd/x86/mod.rs	2018-06-22 00:01:55.142026720 +0500
+@@ -293,13 +293,13 @@
+     /// use std::arch::x86_64::*;
+     ///
+     /// # fn main() {
+-    /// # #[target_feature(enable = "sse")]
++    /// # #[target_feature(enable = "avx")]
+     /// # unsafe fn foo() {
+     /// let eight_zeros = _mm256_setzero_ps();
+     /// let eight_ones = _mm256_set1_ps(1.0);
+     /// let eight_floats = _mm256_set_ps(1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0);
+     /// # }
+-    /// # if is_x86_feature_detected!("sse") { unsafe { foo() } }
++    /// # if is_x86_feature_detected!("avx") { unsafe { foo() } }
+     /// # }
+     /// ```
+     pub struct __m256(f32, f32, f32, f32, f32, f32, f32, f32);

gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch

@@ -1,28 +0,0 @@
-diff --git a/CMakeLists.txt b/CMakeLists.txt
-index 2efc649..8903b52 100644
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -93,7 +95,7 @@
- find_package(XKB REQUIRED)
-
- # Qt 5
--find_package(Qt5 5.6.0 CONFIG REQUIRED Core DBus Gui Qml Quick LinguistTools)
-+find_package(Qt5 5.8.0 CONFIG REQUIRED Core DBus Gui Qml Quick LinguistTools Test)
-
- # find qt5 imports dir
- get_target_property(QMAKE_EXECUTABLE Qt5::qmake LOCATION)
-diff --git a/test/CMakeLists.txt b/test/CMakeLists.txt
-index c9d935a..bb85ddd 100644
---- a/test/CMakeLists.txt
-+++ b/test/CMakeLists.txt
-@@ -2,9 +2,8 @@
-
- include_directories(../src/common)
-
--
- set(ConfigurationTest_SRCS ConfigurationTest.cpp ../src/common/ConfigReader.cpp)
- add_executable(ConfigurationTest ${ConfigurationTest_SRCS})
- add_test(NAME Configuration COMMAND ConfigurationTest)
-
--qt5_use_modules(ConfigurationTest Test)
-+target_link_libraries(ConfigurationTest Qt5::Core Qt5::Test)

gnu/packages/patches/twinkle-include-qregexpvalidator.patch

@@ -0,0 +1,123 @@
+Copied from upstream:
+
+https://github.com/LubosD/twinkle/commit/4b42755619011c117a76bdf98e417ebedc47e319
+
+From 4b42755619011c117a76bdf98e417ebedc47e319 Mon Sep 17 00:00:00 2001
+From: Michal Kubecek <mkubecek@suse.cz>
+Date: Wed, 6 Jun 2018 10:07:21 +0200
+Subject: [PATCH] Include <QRegExpValidator> explicitly
+
+Since Qt 5.11, generated ui_getprofilename.h no longer includes QHeaderView
+which breaks the chain that included qvalidator.h in getprofilename.cpp.
+As it feels rather fragile to rely on such indirect includes, let's include
+<QRegExpValidator> explicitly in each file using QRegExpValidator class.
+---
+ src/gui/diamondcardprofileform.cpp | 1 +
+ src/gui/getprofilenameform.cpp     | 2 +-
+ src/gui/inviteform.cpp             | 1 +
+ src/gui/mphoneform.cpp             | 1 +
+ src/gui/numberconversionform.cpp   | 1 +
+ src/gui/syssettingsform.cpp        | 1 +
+ src/gui/userprofileform.cpp        | 1 +
+ src/gui/wizardform.cpp             | 1 +
+ 8 files changed, 8 insertions(+), 1 deletion(-)
+
+diff --git a/src/gui/diamondcardprofileform.cpp b/src/gui/diamondcardprofileform.cpp
+index 6656909..517180b 100644
+--- a/src/gui/diamondcardprofileform.cpp
++++ b/src/gui/diamondcardprofileform.cpp
+@@ -21,6 +21,7 @@
+ 
+ #include <QRegExp>
+ #include <QValidator>
++#include <QRegExpValidator>
+ #include "gui.h"
+ #include "diamondcard.h"
+ #include "getprofilenameform.h"
+diff --git a/src/gui/getprofilenameform.cpp b/src/gui/getprofilenameform.cpp
+index 1319e1d..89c715e 100644
+--- a/src/gui/getprofilenameform.cpp
++++ b/src/gui/getprofilenameform.cpp
+@@ -1,7 +1,7 @@
+ #include "getprofilenameform.h"
+-
+ #include <QDir>
+ #include <QMessageBox>
++#include <QRegExpValidator>
+ #include "user.h"
+ #include "protocol.h"
+ 
+diff --git a/src/gui/inviteform.cpp b/src/gui/inviteform.cpp
+index 433fb22..2a5b68d 100644
+--- a/src/gui/inviteform.cpp
++++ b/src/gui/inviteform.cpp
+@@ -7,6 +7,7 @@
+ #include "sys_settings.h"
+ #include <QRegExp>
+ #include <QValidator>
++#include <QRegExpValidator>
+ 
+ /*
+     Copyright (C) 2005-2009  Michel de Boer <michel@twinklephone.com>
+diff --git a/src/gui/mphoneform.cpp b/src/gui/mphoneform.cpp
+index 260fda7..c4e3c1d 100644
+--- a/src/gui/mphoneform.cpp
++++ b/src/gui/mphoneform.cpp
+@@ -54,6 +54,7 @@
+ #include <QRegExp>
+ #include <QValidator>
+ #include <QSettings>
++#include <QRegExpValidator>
+ #include "buddyform.h"
+ #include "diamondcardprofileform.h"
+ #include "osd.h"
+diff --git a/src/gui/numberconversionform.cpp b/src/gui/numberconversionform.cpp
+index f8ae64c..8481a9b 100644
+--- a/src/gui/numberconversionform.cpp
++++ b/src/gui/numberconversionform.cpp
+@@ -1,5 +1,6 @@
+ #include "numberconversionform.h"
+ 
++#include <QRegExpValidator>
+ #include "gui.h"
+ 
+ /*
+diff --git a/src/gui/syssettingsform.cpp b/src/gui/syssettingsform.cpp
+index 216af54..355df59 100644
+--- a/src/gui/syssettingsform.cpp
++++ b/src/gui/syssettingsform.cpp
+@@ -28,6 +28,7 @@
+ #include "twinkle_config.h"
+ #include <QRegExp>
+ #include <QValidator>
++#include <QRegExpValidator>
+ #include "syssettingsform.h"
+ /*
+  *  Constructs a SysSettingsForm as a child of 'parent', with the
+diff --git a/src/gui/userprofileform.cpp b/src/gui/userprofileform.cpp
+index 28700a6..9ed9209 100644
+--- a/src/gui/userprofileform.cpp
++++ b/src/gui/userprofileform.cpp
+@@ -31,6 +31,7 @@
+ #include <QStringList>
+ #include "twinkle_config.h"
+ #include <QListWidget>
++#include <QRegExpValidator>
+ #include "numberconversionform.h"
+ #include "util.h"
+ #include "userprofileform.h"
+diff --git a/src/gui/wizardform.cpp b/src/gui/wizardform.cpp
+index 777aa12..f925875 100644
+--- a/src/gui/wizardform.cpp
++++ b/src/gui/wizardform.cpp
+@@ -23,6 +23,7 @@
+ #include <QTextStream>
+ #include "gui.h"
+ #include <QFile>
++#include <QRegExpValidator>
+ #include "wizardform.h"
+ 
+ #define PROV_NONE	QT_TRANSLATE_NOOP("WizardForm", "None (direct IP to IP calls)")
+-- 
+2.17.0
+

gnu/packages/patches/x265-arm-asm-primitives.patch

@@ -0,0 +1,360 @@
+From <https://git.busybox.net/buildroot/tree/package/x265/0003-arm-asm-primitives.patch?id=57d4a27eaf1a9e59d767c321e7b7500c5060a2ac>.
+This fixes build errors like:
+
+  cd /tmp/guix-build-x265-2.8.drv-0/x265_2.8/build/encoder && /gnu/store/cd5q2pni1d95fs3cdabbclyh9hqhw2nq-gcc-5.5.0/bin/c++  -DEXPORT_C_API=1 -DHAVE_ARMV6=1 -DHAVE_INT_TYPES_H=1 -DHAVE_NEON -DHIGH_BIT_DEPTH=0 -DX265_ARCH_ARM=1 -DX265_DEPTH=8 -DX265_NS=x265 -D__STDC_LIMIT_MACROS=1 -I/tmp/guix-build-x265-2.8.drv-0/x265_2.8/source/. -I/tmp/guix-build-x265-2.8.drv-0/x265_2.8/source/common -I/tmp/guix-build-x265-2.8.drv-0/x265_2.8/source/encoder -I/tmp/guix-build-x265-2.8.drv-0/x265_2.8/build  -O2 -g -DNDEBUG   -Wall -Wextra -Wshadow -std=gnu++98 -fPIC -mcpu=native -mfloat-abi=hard -mfpu=neon -marm -fPIC -Wno-array-bounds -ffast-math -fno-exceptions -Wno-uninitialized -o CMakeFiles/encoder.dir/search.cpp.o -c /tmp/guix-build-x265-2.8.drv-0/x265_2.8/source/encoder/search.cpp
+  /tmp/guix-build-x265-2.8.drv-0/x265_2.8/source/common/arm/asm-primitives.cpp:437:38: error: incompatible types in assignment of ?void(const pixel*, intptr_t, int16_t*, intptr_t) {aka void(const unsigned char*, int, short int*, int)}? to ?void (* [2])(const pixel*, intptr_t, int16_t*, intptr_t) {aka void (* [2])(const unsigned char*, int, short int*, int)}?
+	   p.pu[LUMA_64x48].convert_p2s = PFX(filterPixelToShort_64x48_neon);
+					^
+
+Downloaded from upstream bug report:
+https://bitbucket.org/multicoreware/x265/issues/406
+
+Signed-off-by: Bernd Kuhls <bernd.kuhls@t-online.de>
+
+--- ./source/common/arm/asm-primitives.cpp.orig	2018-05-21 02:33:10.000000000 -0600
++++ ./source/common/arm/asm-primitives.cpp	2018-05-28 20:38:37.302378303 -0600
+@@ -48,77 +48,77 @@ void setupAssemblyPrimitives(EncoderPrim
+         p.ssim_4x4x2_core = PFX(ssim_4x4x2_core_neon);
+ 
+         // addAvg
+-         p.pu[LUMA_4x4].addAvg   = PFX(addAvg_4x4_neon);
+-         p.pu[LUMA_4x8].addAvg   = PFX(addAvg_4x8_neon);
+-         p.pu[LUMA_4x16].addAvg  = PFX(addAvg_4x16_neon);
+-         p.pu[LUMA_8x4].addAvg   = PFX(addAvg_8x4_neon);
+-         p.pu[LUMA_8x8].addAvg   = PFX(addAvg_8x8_neon);
+-         p.pu[LUMA_8x16].addAvg  = PFX(addAvg_8x16_neon);
+-         p.pu[LUMA_8x32].addAvg  = PFX(addAvg_8x32_neon);
+-         p.pu[LUMA_12x16].addAvg = PFX(addAvg_12x16_neon);
+-         p.pu[LUMA_16x4].addAvg  = PFX(addAvg_16x4_neon);
+-         p.pu[LUMA_16x8].addAvg  = PFX(addAvg_16x8_neon);
+-         p.pu[LUMA_16x12].addAvg = PFX(addAvg_16x12_neon);
+-         p.pu[LUMA_16x16].addAvg = PFX(addAvg_16x16_neon);
+-         p.pu[LUMA_16x32].addAvg = PFX(addAvg_16x32_neon);
+-         p.pu[LUMA_16x64].addAvg = PFX(addAvg_16x64_neon);
+-         p.pu[LUMA_24x32].addAvg = PFX(addAvg_24x32_neon);
+-         p.pu[LUMA_32x8].addAvg  = PFX(addAvg_32x8_neon);
+-         p.pu[LUMA_32x16].addAvg = PFX(addAvg_32x16_neon);
+-         p.pu[LUMA_32x24].addAvg = PFX(addAvg_32x24_neon);
+-         p.pu[LUMA_32x32].addAvg = PFX(addAvg_32x32_neon);
+-         p.pu[LUMA_32x64].addAvg = PFX(addAvg_32x64_neon);
+-         p.pu[LUMA_48x64].addAvg = PFX(addAvg_48x64_neon);
+-         p.pu[LUMA_64x16].addAvg = PFX(addAvg_64x16_neon);
+-         p.pu[LUMA_64x32].addAvg = PFX(addAvg_64x32_neon);
+-         p.pu[LUMA_64x48].addAvg = PFX(addAvg_64x48_neon);
+-         p.pu[LUMA_64x64].addAvg = PFX(addAvg_64x64_neon);
++         p.pu[LUMA_4x4].addAvg[ALIGNED]   = PFX(addAvg_4x4_neon);
++         p.pu[LUMA_4x8].addAvg[ALIGNED]   = PFX(addAvg_4x8_neon);
++         p.pu[LUMA_4x16].addAvg[ALIGNED]  = PFX(addAvg_4x16_neon);
++         p.pu[LUMA_8x4].addAvg[ALIGNED]   = PFX(addAvg_8x4_neon);
++         p.pu[LUMA_8x8].addAvg[ALIGNED]   = PFX(addAvg_8x8_neon);
++         p.pu[LUMA_8x16].addAvg[ALIGNED]  = PFX(addAvg_8x16_neon);
++         p.pu[LUMA_8x32].addAvg[ALIGNED]  = PFX(addAvg_8x32_neon);
++         p.pu[LUMA_12x16].addAvg[ALIGNED] = PFX(addAvg_12x16_neon);
++         p.pu[LUMA_16x4].addAvg[ALIGNED]  = PFX(addAvg_16x4_neon);
++         p.pu[LUMA_16x8].addAvg[ALIGNED]  = PFX(addAvg_16x8_neon);
++         p.pu[LUMA_16x12].addAvg[ALIGNED] = PFX(addAvg_16x12_neon);
++         p.pu[LUMA_16x16].addAvg[ALIGNED] = PFX(addAvg_16x16_neon);
++         p.pu[LUMA_16x32].addAvg[ALIGNED] = PFX(addAvg_16x32_neon);
++         p.pu[LUMA_16x64].addAvg[ALIGNED] = PFX(addAvg_16x64_neon);
++         p.pu[LUMA_24x32].addAvg[ALIGNED] = PFX(addAvg_24x32_neon);
++         p.pu[LUMA_32x8].addAvg[ALIGNED]  = PFX(addAvg_32x8_neon);
++         p.pu[LUMA_32x16].addAvg[ALIGNED] = PFX(addAvg_32x16_neon);
++         p.pu[LUMA_32x24].addAvg[ALIGNED] = PFX(addAvg_32x24_neon);
++         p.pu[LUMA_32x32].addAvg[ALIGNED] = PFX(addAvg_32x32_neon);
++         p.pu[LUMA_32x64].addAvg[ALIGNED] = PFX(addAvg_32x64_neon);
++         p.pu[LUMA_48x64].addAvg[ALIGNED] = PFX(addAvg_48x64_neon);
++         p.pu[LUMA_64x16].addAvg[ALIGNED] = PFX(addAvg_64x16_neon);
++         p.pu[LUMA_64x32].addAvg[ALIGNED] = PFX(addAvg_64x32_neon);
++         p.pu[LUMA_64x48].addAvg[ALIGNED] = PFX(addAvg_64x48_neon);
++         p.pu[LUMA_64x64].addAvg[ALIGNED] = PFX(addAvg_64x64_neon);
+ 
+         // chroma addAvg
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_4x2].addAvg   = PFX(addAvg_4x2_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_4x4].addAvg   = PFX(addAvg_4x4_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_4x8].addAvg   = PFX(addAvg_4x8_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_4x16].addAvg  = PFX(addAvg_4x16_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_6x8].addAvg   = PFX(addAvg_6x8_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x2].addAvg   = PFX(addAvg_8x2_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x4].addAvg   = PFX(addAvg_8x4_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x6].addAvg   = PFX(addAvg_8x6_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x8].addAvg   = PFX(addAvg_8x8_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x16].addAvg  = PFX(addAvg_8x16_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x32].addAvg  = PFX(addAvg_8x32_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_12x16].addAvg = PFX(addAvg_12x16_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x4].addAvg  = PFX(addAvg_16x4_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x8].addAvg  = PFX(addAvg_16x8_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x12].addAvg = PFX(addAvg_16x12_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x16].addAvg = PFX(addAvg_16x16_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x32].addAvg = PFX(addAvg_16x32_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_24x32].addAvg = PFX(addAvg_24x32_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_32x8].addAvg  = PFX(addAvg_32x8_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_32x16].addAvg = PFX(addAvg_32x16_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_32x24].addAvg = PFX(addAvg_32x24_neon);
+-        p.chroma[X265_CSP_I420].pu[CHROMA_420_32x32].addAvg = PFX(addAvg_32x32_neon);
+-
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_4x8].addAvg   = PFX(addAvg_4x8_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_4x16].addAvg  = PFX(addAvg_4x16_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_4x32].addAvg  = PFX(addAvg_4x32_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_6x16].addAvg  = PFX(addAvg_6x16_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x4].addAvg   = PFX(addAvg_8x4_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x8].addAvg   = PFX(addAvg_8x8_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x12].addAvg  = PFX(addAvg_8x12_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x16].addAvg  = PFX(addAvg_8x16_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x32].addAvg  = PFX(addAvg_8x32_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x64].addAvg  = PFX(addAvg_8x64_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_12x32].addAvg = PFX(addAvg_12x32_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x8].addAvg  = PFX(addAvg_16x8_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x16].addAvg = PFX(addAvg_16x16_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x24].addAvg = PFX(addAvg_16x24_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x32].addAvg = PFX(addAvg_16x32_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x64].addAvg = PFX(addAvg_16x64_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_24x64].addAvg = PFX(addAvg_24x64_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_32x16].addAvg = PFX(addAvg_32x16_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_32x32].addAvg = PFX(addAvg_32x32_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_32x48].addAvg = PFX(addAvg_32x48_neon);
+-        p.chroma[X265_CSP_I422].pu[CHROMA_422_32x64].addAvg = PFX(addAvg_32x64_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_4x2].addAvg[ALIGNED]   = PFX(addAvg_4x2_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_4x4].addAvg[ALIGNED]   = PFX(addAvg_4x4_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_4x8].addAvg[ALIGNED]   = PFX(addAvg_4x8_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_4x16].addAvg[ALIGNED]  = PFX(addAvg_4x16_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_6x8].addAvg[ALIGNED]   = PFX(addAvg_6x8_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x2].addAvg[ALIGNED]   = PFX(addAvg_8x2_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x4].addAvg[ALIGNED]   = PFX(addAvg_8x4_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x6].addAvg[ALIGNED]   = PFX(addAvg_8x6_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x8].addAvg[ALIGNED]   = PFX(addAvg_8x8_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x16].addAvg[ALIGNED]  = PFX(addAvg_8x16_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x32].addAvg[ALIGNED]  = PFX(addAvg_8x32_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_12x16].addAvg[ALIGNED] = PFX(addAvg_12x16_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x4].addAvg[ALIGNED]  = PFX(addAvg_16x4_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x8].addAvg[ALIGNED]  = PFX(addAvg_16x8_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x12].addAvg[ALIGNED] = PFX(addAvg_16x12_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x16].addAvg[ALIGNED] = PFX(addAvg_16x16_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x32].addAvg[ALIGNED] = PFX(addAvg_16x32_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_24x32].addAvg[ALIGNED] = PFX(addAvg_24x32_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_32x8].addAvg[ALIGNED]  = PFX(addAvg_32x8_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_32x16].addAvg[ALIGNED] = PFX(addAvg_32x16_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_32x24].addAvg[ALIGNED] = PFX(addAvg_32x24_neon);
++        p.chroma[X265_CSP_I420].pu[CHROMA_420_32x32].addAvg[ALIGNED] = PFX(addAvg_32x32_neon);
++
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_4x8].addAvg[ALIGNED]   = PFX(addAvg_4x8_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_4x16].addAvg[ALIGNED]  = PFX(addAvg_4x16_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_4x32].addAvg[ALIGNED]  = PFX(addAvg_4x32_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_6x16].addAvg[ALIGNED]  = PFX(addAvg_6x16_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x4].addAvg[ALIGNED]   = PFX(addAvg_8x4_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x8].addAvg[ALIGNED]   = PFX(addAvg_8x8_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x12].addAvg[ALIGNED]  = PFX(addAvg_8x12_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x16].addAvg[ALIGNED]  = PFX(addAvg_8x16_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x32].addAvg[ALIGNED]  = PFX(addAvg_8x32_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x64].addAvg[ALIGNED]  = PFX(addAvg_8x64_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_12x32].addAvg[ALIGNED] = PFX(addAvg_12x32_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x8].addAvg[ALIGNED]  = PFX(addAvg_16x8_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x16].addAvg[ALIGNED] = PFX(addAvg_16x16_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x24].addAvg[ALIGNED] = PFX(addAvg_16x24_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x32].addAvg[ALIGNED] = PFX(addAvg_16x32_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x64].addAvg[ALIGNED] = PFX(addAvg_16x64_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_24x64].addAvg[ALIGNED] = PFX(addAvg_24x64_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_32x16].addAvg[ALIGNED] = PFX(addAvg_32x16_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_32x32].addAvg[ALIGNED] = PFX(addAvg_32x32_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_32x48].addAvg[ALIGNED] = PFX(addAvg_32x48_neon);
++        p.chroma[X265_CSP_I422].pu[CHROMA_422_32x64].addAvg[ALIGNED] = PFX(addAvg_32x64_neon);
+ 
+         // quant
+          p.quant = PFX(quant_neon);
+@@ -402,7 +402,7 @@ void setupAssemblyPrimitives(EncoderPrim
+         p.scale2D_64to32  = PFX(scale2D_64to32_neon);
+ 
+         // scale1D_128to64
+-        p.scale1D_128to64 = PFX(scale1D_128to64_neon);
++        p.scale1D_128to64[ALIGNED] = PFX(scale1D_128to64_neon);
+ 
+         // copy_count
+         p.cu[BLOCK_4x4].copy_cnt     = PFX(copy_cnt_4_neon);
+@@ -411,37 +411,37 @@ void setupAssemblyPrimitives(EncoderPrim
+         p.cu[BLOCK_32x32].copy_cnt   = PFX(copy_cnt_32_neon);
+ 
+         // filterPixelToShort
+-        p.pu[LUMA_4x4].convert_p2s   = PFX(filterPixelToShort_4x4_neon);
+-        p.pu[LUMA_4x8].convert_p2s   = PFX(filterPixelToShort_4x8_neon);
+-        p.pu[LUMA_4x16].convert_p2s  = PFX(filterPixelToShort_4x16_neon);
+-        p.pu[LUMA_8x4].convert_p2s   = PFX(filterPixelToShort_8x4_neon);
+-        p.pu[LUMA_8x8].convert_p2s   = PFX(filterPixelToShort_8x8_neon);
+-        p.pu[LUMA_8x16].convert_p2s  = PFX(filterPixelToShort_8x16_neon);
+-        p.pu[LUMA_8x32].convert_p2s  = PFX(filterPixelToShort_8x32_neon);
+-        p.pu[LUMA_12x16].convert_p2s = PFX(filterPixelToShort_12x16_neon);
+-        p.pu[LUMA_16x4].convert_p2s  = PFX(filterPixelToShort_16x4_neon);
+-        p.pu[LUMA_16x8].convert_p2s  = PFX(filterPixelToShort_16x8_neon);
+-        p.pu[LUMA_16x12].convert_p2s = PFX(filterPixelToShort_16x12_neon);
+-        p.pu[LUMA_16x16].convert_p2s = PFX(filterPixelToShort_16x16_neon);
+-        p.pu[LUMA_16x32].convert_p2s = PFX(filterPixelToShort_16x32_neon);
+-        p.pu[LUMA_16x64].convert_p2s = PFX(filterPixelToShort_16x64_neon);
+-        p.pu[LUMA_24x32].convert_p2s = PFX(filterPixelToShort_24x32_neon);
+-        p.pu[LUMA_32x8].convert_p2s  = PFX(filterPixelToShort_32x8_neon);
+-        p.pu[LUMA_32x16].convert_p2s = PFX(filterPixelToShort_32x16_neon);
+-        p.pu[LUMA_32x24].convert_p2s = PFX(filterPixelToShort_32x24_neon);
+-        p.pu[LUMA_32x32].convert_p2s = PFX(filterPixelToShort_32x32_neon);
+-        p.pu[LUMA_32x64].convert_p2s = PFX(filterPixelToShort_32x64_neon);
+-        p.pu[LUMA_48x64].convert_p2s = PFX(filterPixelToShort_48x64_neon);
+-        p.pu[LUMA_64x16].convert_p2s = PFX(filterPixelToShort_64x16_neon);
+-        p.pu[LUMA_64x32].convert_p2s = PFX(filterPixelToShort_64x32_neon);
+-        p.pu[LUMA_64x48].convert_p2s = PFX(filterPixelToShort_64x48_neon);
+-        p.pu[LUMA_64x64].convert_p2s = PFX(filterPixelToShort_64x64_neon);
++        p.pu[LUMA_4x4].convert_p2s[ALIGNED]   = PFX(filterPixelToShort_4x4_neon);
++        p.pu[LUMA_4x8].convert_p2s[ALIGNED]   = PFX(filterPixelToShort_4x8_neon);
++        p.pu[LUMA_4x16].convert_p2s[ALIGNED]  = PFX(filterPixelToShort_4x16_neon);
++        p.pu[LUMA_8x4].convert_p2s[ALIGNED]   = PFX(filterPixelToShort_8x4_neon);
++        p.pu[LUMA_8x8].convert_p2s[ALIGNED]   = PFX(filterPixelToShort_8x8_neon);
++        p.pu[LUMA_8x16].convert_p2s[ALIGNED]  = PFX(filterPixelToShort_8x16_neon);
++        p.pu[LUMA_8x32].convert_p2s[ALIGNED]  = PFX(filterPixelToShort_8x32_neon);
++        p.pu[LUMA_12x16].convert_p2s[ALIGNED] = PFX(filterPixelToShort_12x16_neon);
++        p.pu[LUMA_16x4].convert_p2s[ALIGNED]  = PFX(filterPixelToShort_16x4_neon);
++        p.pu[LUMA_16x8].convert_p2s[ALIGNED]  = PFX(filterPixelToShort_16x8_neon);
++        p.pu[LUMA_16x12].convert_p2s[ALIGNED] = PFX(filterPixelToShort_16x12_neon);
++        p.pu[LUMA_16x16].convert_p2s[ALIGNED] = PFX(filterPixelToShort_16x16_neon);
++        p.pu[LUMA_16x32].convert_p2s[ALIGNED] = PFX(filterPixelToShort_16x32_neon);
++        p.pu[LUMA_16x64].convert_p2s[ALIGNED] = PFX(filterPixelToShort_16x64_neon);
++        p.pu[LUMA_24x32].convert_p2s[ALIGNED] = PFX(filterPixelToShort_24x32_neon);
++        p.pu[LUMA_32x8].convert_p2s[ALIGNED]  = PFX(filterPixelToShort_32x8_neon);
++        p.pu[LUMA_32x16].convert_p2s[ALIGNED] = PFX(filterPixelToShort_32x16_neon);
++        p.pu[LUMA_32x24].convert_p2s[ALIGNED] = PFX(filterPixelToShort_32x24_neon);
++        p.pu[LUMA_32x32].convert_p2s[ALIGNED] = PFX(filterPixelToShort_32x32_neon);
++        p.pu[LUMA_32x64].convert_p2s[ALIGNED] = PFX(filterPixelToShort_32x64_neon);
++        p.pu[LUMA_48x64].convert_p2s[ALIGNED] = PFX(filterPixelToShort_48x64_neon);
++        p.pu[LUMA_64x16].convert_p2s[ALIGNED] = PFX(filterPixelToShort_64x16_neon);
++        p.pu[LUMA_64x32].convert_p2s[ALIGNED] = PFX(filterPixelToShort_64x32_neon);
++        p.pu[LUMA_64x48].convert_p2s[ALIGNED] = PFX(filterPixelToShort_64x48_neon);
++        p.pu[LUMA_64x64].convert_p2s[ALIGNED] = PFX(filterPixelToShort_64x64_neon);
+ 
+         // Block_fill
+-        p.cu[BLOCK_4x4].blockfill_s   = PFX(blockfill_s_4x4_neon);
+-        p.cu[BLOCK_8x8].blockfill_s   = PFX(blockfill_s_8x8_neon);
+-        p.cu[BLOCK_16x16].blockfill_s = PFX(blockfill_s_16x16_neon);
+-        p.cu[BLOCK_32x32].blockfill_s = PFX(blockfill_s_32x32_neon);
++        p.cu[BLOCK_4x4].blockfill_s[ALIGNED]   = PFX(blockfill_s_4x4_neon);
++        p.cu[BLOCK_8x8].blockfill_s[ALIGNED]   = PFX(blockfill_s_8x8_neon);
++        p.cu[BLOCK_16x16].blockfill_s[ALIGNED] = PFX(blockfill_s_16x16_neon);
++        p.cu[BLOCK_32x32].blockfill_s[ALIGNED] = PFX(blockfill_s_32x32_neon);
+ 
+         // Blockcopy_ss
+         p.cu[BLOCK_4x4].copy_ss   = PFX(blockcopy_ss_4x4_neon);
+@@ -495,21 +495,21 @@ void setupAssemblyPrimitives(EncoderPrim
+         p.chroma[X265_CSP_I422].cu[BLOCK_422_32x64].copy_sp = PFX(blockcopy_sp_32x64_neon);
+ 
+         // pixel_add_ps
+-        p.cu[BLOCK_4x4].add_ps   = PFX(pixel_add_ps_4x4_neon);
+-        p.cu[BLOCK_8x8].add_ps   = PFX(pixel_add_ps_8x8_neon);
+-        p.cu[BLOCK_16x16].add_ps = PFX(pixel_add_ps_16x16_neon);
+-        p.cu[BLOCK_32x32].add_ps = PFX(pixel_add_ps_32x32_neon);
+-        p.cu[BLOCK_64x64].add_ps = PFX(pixel_add_ps_64x64_neon);
++        p.cu[BLOCK_4x4].add_ps[ALIGNED]   = PFX(pixel_add_ps_4x4_neon);
++        p.cu[BLOCK_8x8].add_ps[ALIGNED]   = PFX(pixel_add_ps_8x8_neon);
++        p.cu[BLOCK_16x16].add_ps[ALIGNED] = PFX(pixel_add_ps_16x16_neon);
++        p.cu[BLOCK_32x32].add_ps[ALIGNED] = PFX(pixel_add_ps_32x32_neon);
++        p.cu[BLOCK_64x64].add_ps[ALIGNED] = PFX(pixel_add_ps_64x64_neon);
+ 
+         // chroma add_ps
+-        p.chroma[X265_CSP_I420].cu[BLOCK_420_4x4].add_ps   = PFX(pixel_add_ps_4x4_neon);
+-        p.chroma[X265_CSP_I420].cu[BLOCK_420_8x8].add_ps   = PFX(pixel_add_ps_8x8_neon);
+-        p.chroma[X265_CSP_I420].cu[BLOCK_420_16x16].add_ps = PFX(pixel_add_ps_16x16_neon);
+-        p.chroma[X265_CSP_I420].cu[BLOCK_420_32x32].add_ps = PFX(pixel_add_ps_32x32_neon);
+-        p.chroma[X265_CSP_I422].cu[BLOCK_422_4x8].add_ps   = PFX(pixel_add_ps_4x8_neon);
+-        p.chroma[X265_CSP_I422].cu[BLOCK_422_8x16].add_ps  = PFX(pixel_add_ps_8x16_neon);
+-        p.chroma[X265_CSP_I422].cu[BLOCK_422_16x32].add_ps = PFX(pixel_add_ps_16x32_neon);
+-        p.chroma[X265_CSP_I422].cu[BLOCK_422_32x64].add_ps = PFX(pixel_add_ps_32x64_neon);
++        p.chroma[X265_CSP_I420].cu[BLOCK_420_4x4].add_ps[ALIGNED]   = PFX(pixel_add_ps_4x4_neon);
++        p.chroma[X265_CSP_I420].cu[BLOCK_420_8x8].add_ps[ALIGNED]   = PFX(pixel_add_ps_8x8_neon);
++        p.chroma[X265_CSP_I420].cu[BLOCK_420_16x16].add_ps[ALIGNED] = PFX(pixel_add_ps_16x16_neon);
++        p.chroma[X265_CSP_I420].cu[BLOCK_420_32x32].add_ps[ALIGNED] = PFX(pixel_add_ps_32x32_neon);
++        p.chroma[X265_CSP_I422].cu[BLOCK_422_4x8].add_ps[ALIGNED]   = PFX(pixel_add_ps_4x8_neon);
++        p.chroma[X265_CSP_I422].cu[BLOCK_422_8x16].add_ps[ALIGNED]  = PFX(pixel_add_ps_8x16_neon);
++        p.chroma[X265_CSP_I422].cu[BLOCK_422_16x32].add_ps[ALIGNED] = PFX(pixel_add_ps_16x32_neon);
++        p.chroma[X265_CSP_I422].cu[BLOCK_422_32x64].add_ps[ALIGNED] = PFX(pixel_add_ps_32x64_neon);
+ 
+         // cpy2Dto1D_shr
+         p.cu[BLOCK_4x4].cpy2Dto1D_shr   = PFX(cpy2Dto1D_shr_4x4_neon);
+@@ -518,10 +518,10 @@ void setupAssemblyPrimitives(EncoderPrim
+         p.cu[BLOCK_32x32].cpy2Dto1D_shr = PFX(cpy2Dto1D_shr_32x32_neon);
+ 
+         // ssd_s
+-        p.cu[BLOCK_4x4].ssd_s   = PFX(pixel_ssd_s_4x4_neon);
+-        p.cu[BLOCK_8x8].ssd_s   = PFX(pixel_ssd_s_8x8_neon);
+-        p.cu[BLOCK_16x16].ssd_s = PFX(pixel_ssd_s_16x16_neon);
+-        p.cu[BLOCK_32x32].ssd_s = PFX(pixel_ssd_s_32x32_neon);
++        p.cu[BLOCK_4x4].ssd_s[ALIGNED]   = PFX(pixel_ssd_s_4x4_neon);
++        p.cu[BLOCK_8x8].ssd_s[ALIGNED]   = PFX(pixel_ssd_s_8x8_neon);
++        p.cu[BLOCK_16x16].ssd_s[ALIGNED] = PFX(pixel_ssd_s_16x16_neon);
++        p.cu[BLOCK_32x32].ssd_s[ALIGNED] = PFX(pixel_ssd_s_32x32_neon);
+ 
+         // sse_ss
+         p.cu[BLOCK_4x4].sse_ss   = PFX(pixel_sse_ss_4x4_neon);
+@@ -548,10 +548,10 @@ void setupAssemblyPrimitives(EncoderPrim
+         p.chroma[X265_CSP_I422].cu[BLOCK_422_32x64].sub_ps = PFX(pixel_sub_ps_32x64_neon);
+ 
+         // calc_Residual
+-        p.cu[BLOCK_4x4].calcresidual   = PFX(getResidual4_neon);
+-        p.cu[BLOCK_8x8].calcresidual   = PFX(getResidual8_neon);
+-        p.cu[BLOCK_16x16].calcresidual = PFX(getResidual16_neon);
+-        p.cu[BLOCK_32x32].calcresidual = PFX(getResidual32_neon);
++        p.cu[BLOCK_4x4].calcresidual[ALIGNED]   = PFX(getResidual4_neon);
++        p.cu[BLOCK_8x8].calcresidual[ALIGNED]   = PFX(getResidual8_neon);
++        p.cu[BLOCK_16x16].calcresidual[ALIGNED] = PFX(getResidual16_neon);
++        p.cu[BLOCK_32x32].calcresidual[ALIGNED] = PFX(getResidual32_neon);
+ 
+         // sse_pp
+         p.cu[BLOCK_4x4].sse_pp   = PFX(pixel_sse_pp_4x4_neon);
+@@ -722,31 +722,31 @@ void setupAssemblyPrimitives(EncoderPrim
+         p.pu[LUMA_64x64].sad_x4 = PFX(sad_x4_64x64_neon);
+ 
+         // pixel_avg_pp
+-        p.pu[LUMA_4x4].pixelavg_pp   = PFX(pixel_avg_pp_4x4_neon);
+-        p.pu[LUMA_4x8].pixelavg_pp   = PFX(pixel_avg_pp_4x8_neon);
+-        p.pu[LUMA_4x16].pixelavg_pp  = PFX(pixel_avg_pp_4x16_neon);
+-        p.pu[LUMA_8x4].pixelavg_pp   = PFX(pixel_avg_pp_8x4_neon);
+-        p.pu[LUMA_8x8].pixelavg_pp   = PFX(pixel_avg_pp_8x8_neon);
+-        p.pu[LUMA_8x16].pixelavg_pp  = PFX(pixel_avg_pp_8x16_neon);
+-        p.pu[LUMA_8x32].pixelavg_pp  = PFX(pixel_avg_pp_8x32_neon);
+-        p.pu[LUMA_12x16].pixelavg_pp = PFX(pixel_avg_pp_12x16_neon);
+-        p.pu[LUMA_16x4].pixelavg_pp  = PFX(pixel_avg_pp_16x4_neon);
+-        p.pu[LUMA_16x8].pixelavg_pp  = PFX(pixel_avg_pp_16x8_neon);
+-        p.pu[LUMA_16x12].pixelavg_pp = PFX(pixel_avg_pp_16x12_neon);
+-        p.pu[LUMA_16x16].pixelavg_pp = PFX(pixel_avg_pp_16x16_neon);
+-        p.pu[LUMA_16x32].pixelavg_pp = PFX(pixel_avg_pp_16x32_neon);
+-        p.pu[LUMA_16x64].pixelavg_pp = PFX(pixel_avg_pp_16x64_neon);
+-        p.pu[LUMA_24x32].pixelavg_pp = PFX(pixel_avg_pp_24x32_neon);
+-        p.pu[LUMA_32x8].pixelavg_pp  = PFX(pixel_avg_pp_32x8_neon);
+-        p.pu[LUMA_32x16].pixelavg_pp = PFX(pixel_avg_pp_32x16_neon);
+-        p.pu[LUMA_32x24].pixelavg_pp = PFX(pixel_avg_pp_32x24_neon);
+-        p.pu[LUMA_32x32].pixelavg_pp = PFX(pixel_avg_pp_32x32_neon);
+-        p.pu[LUMA_32x64].pixelavg_pp = PFX(pixel_avg_pp_32x64_neon);
+-        p.pu[LUMA_48x64].pixelavg_pp = PFX(pixel_avg_pp_48x64_neon);
+-        p.pu[LUMA_64x16].pixelavg_pp = PFX(pixel_avg_pp_64x16_neon);
+-        p.pu[LUMA_64x32].pixelavg_pp = PFX(pixel_avg_pp_64x32_neon);
+-        p.pu[LUMA_64x48].pixelavg_pp = PFX(pixel_avg_pp_64x48_neon);
+-        p.pu[LUMA_64x64].pixelavg_pp = PFX(pixel_avg_pp_64x64_neon);
++        p.pu[LUMA_4x4].pixelavg_pp[ALIGNED]   = PFX(pixel_avg_pp_4x4_neon);
++        p.pu[LUMA_4x8].pixelavg_pp[ALIGNED]   = PFX(pixel_avg_pp_4x8_neon);
++        p.pu[LUMA_4x16].pixelavg_pp[ALIGNED]  = PFX(pixel_avg_pp_4x16_neon);
++        p.pu[LUMA_8x4].pixelavg_pp[ALIGNED]   = PFX(pixel_avg_pp_8x4_neon);
++        p.pu[LUMA_8x8].pixelavg_pp[ALIGNED]   = PFX(pixel_avg_pp_8x8_neon);
++        p.pu[LUMA_8x16].pixelavg_pp[ALIGNED]  = PFX(pixel_avg_pp_8x16_neon);
++        p.pu[LUMA_8x32].pixelavg_pp[ALIGNED]  = PFX(pixel_avg_pp_8x32_neon);
++        p.pu[LUMA_12x16].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_12x16_neon);
++        p.pu[LUMA_16x4].pixelavg_pp[ALIGNED]  = PFX(pixel_avg_pp_16x4_neon);
++        p.pu[LUMA_16x8].pixelavg_pp[ALIGNED]  = PFX(pixel_avg_pp_16x8_neon);
++        p.pu[LUMA_16x12].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_16x12_neon);
++        p.pu[LUMA_16x16].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_16x16_neon);
++        p.pu[LUMA_16x32].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_16x32_neon);
++        p.pu[LUMA_16x64].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_16x64_neon);
++        p.pu[LUMA_24x32].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_24x32_neon);
++        p.pu[LUMA_32x8].pixelavg_pp[ALIGNED]  = PFX(pixel_avg_pp_32x8_neon);
++        p.pu[LUMA_32x16].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_32x16_neon);
++        p.pu[LUMA_32x24].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_32x24_neon);
++        p.pu[LUMA_32x32].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_32x32_neon);
++        p.pu[LUMA_32x64].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_32x64_neon);
++        p.pu[LUMA_48x64].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_48x64_neon);
++        p.pu[LUMA_64x16].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_64x16_neon);
++        p.pu[LUMA_64x32].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_64x32_neon);
++        p.pu[LUMA_64x48].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_64x48_neon);
++        p.pu[LUMA_64x64].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_64x64_neon);
+ 
+         // planecopy
+         p.planecopy_cp = PFX(pixel_planecopy_cp_neon);

gnu/packages/patches/xapian-revert-5489fb2f8.patch

@@ -0,0 +1,23 @@
+Revert this upstream commit which breaks a test case in "notmuch":
+
+https://git.xapian.org/?p=xapian;a=commitdiff;h=5489fb2f838c0f0b0a593b4c17df282a93a1fe5a
+
+See the notmuch FAQ entry:
+
+https://notmuchmail.org/faq/#index12h2
+
+This should be fixed for later releases.
+
+diff --git a/backends/glass/glass_postlist.cc b/xapian-core/backends/glass/glass_postlist.cc
+index 80e578b85..a47f14a68 100644
+--- a/backends/glass/glass_postlist.cc
++++ b/backends/glass/glass_postlist.cc
+@@ -759,7 +759,7 @@ GlassPostList::open_nearby_postlist(const std::string & term_,
+     (void)need_pos;
+     if (term_.empty())
+ 	RETURN(NULL);
+-    if (!this_db.get() || this_db->postlist_table.is_modified())
++    if (!this_db.get() || this_db->postlist_table.is_writable())
+ 	RETURN(NULL);
+     RETURN(new GlassPostList(this_db, term_, cursor->clone()));
+ }

gnu/packages/patches/xorg-server-rotate-fb.patch

@@ -0,0 +1,35 @@
+commit a85e94a50c94b07574c8701a3ff3c1243f4257f4
+Author: Olivier Fourdan <ofourdan@redhat.com>
+Date:   Fri Jun 15 08:57:12 2018 +0200
+
+    modesetting: use drmmode_bo_import() for rotate_fb
+    
+    drmmode_shadow_allocate() still uses drmModeAddFB() which may fail if
+    the format is not as expected, preventing from using a rotated output.
+    
+    Change it to use the new function drmmode_bo_import() which takes care
+    of calling the drmModeAddFB2() API.
+    
+    Bugzilla: https://bugs.freedesktop.org/show_bug.cgi?id=106715
+    Signed-off-by: Olivier Fourdan <ofourdan@redhat.com>
+    Tested-by: Tomas Pelka <tpelka@redhat.com>
+    Reviewed-by: Lyude Paul <lyude@redhat.com>
+
+diff --git a/hw/xfree86/drivers/modesetting/drmmode_display.c b/hw/xfree86/drivers/modesetting/drmmode_display.c
+index 859a21a9d..ec11b3f56 100644
+--- a/hw/xfree86/drivers/modesetting/drmmode_display.c
++++ b/hw/xfree86/drivers/modesetting/drmmode_display.c
+@@ -1794,11 +1794,8 @@ drmmode_shadow_allocate(xf86CrtcPtr crtc, int width, int height)
+         return NULL;
+     }
+ 
+-    ret = drmModeAddFB(drmmode->fd, width, height, crtc->scrn->depth,
+-                       drmmode->kbpp,
+-                       drmmode_bo_get_pitch(&drmmode_crtc->rotate_bo),
+-                       drmmode_bo_get_handle(&drmmode_crtc->rotate_bo),
+-                       &drmmode_crtc->rotate_fb_id);
++    ret = drmmode_bo_import(drmmode, &drmmode_crtc->rotate_bo,
++                            &drmmode_crtc->rotate_fb_id);
+ 
+     if (ret) {
+         ErrorF("failed to add rotate fb\n");

gnu/packages/pdf.scm

@@ -169,43 +169,6 @@ When present, Poppler is able to correctly render CJK and Cyrillic text.")
              ,@(package-inputs poppler)))
    (synopsis "Qt5 frontend for the Poppler PDF rendering library")))
 
-(define-public python-poppler-qt4
-  (package
-    (name "python-poppler-qt4")
-    (version "0.24.0")
-    (source
-      (origin
-        (method url-fetch)
-        (uri (string-append "https://pypi.python.org/packages/source/p"
-                            "/python-poppler-qt4/python-poppler-qt4-"
-                            version ".tar.gz"))
-        (sha256
-         (base32
-          "0x63niylkk4q3h3ay8zrk3m1xiik0x3hlr4gvj7kswx48qi1vb99"))))
-    (build-system python-build-system)
-    (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (add-after
-          'unpack 'patch-poppler-include-paths
-          (lambda _
-            (substitute* (find-files "." "poppler-.*\\.sip")
-              (("qt4/poppler-.*\\.h" header)
-               (string-append "poppler/" header)))
-            #t)))))
-    (native-inputs
-     `(("pkg-config" ,pkg-config)))
-    (inputs
-     `(("python-sip" ,python-sip)
-       ("python-pyqt-4" ,python-pyqt-4)
-       ("poppler-qt4" ,poppler-qt4)))
-    (home-page "https://pypi.python.org/pypi/python-poppler-qt4")
-    (synopsis "Python bindings for Poppler-Qt4")
-    (description
-     "This package provides Python bindings for the Qt4 interface of the
-Poppler PDF rendering library.")
-    (license license:lgpl2.1+)))
-
 (define-public python-poppler-qt5
   (package
     (name "python-poppler-qt5")
@@ -585,23 +548,26 @@ interaction.")
 (define-public podofo
   (package
     (name "podofo")
-    (version "0.9.5")
+    (version "0.9.6")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/podofo/podofo/" version
                                   "/podofo-" version ".tar.gz"))
               (sha256
                (base32
-                "012kgfx5j5n6w4zkc1d290d2cwjk60jhzsjlr2x19g3yi75q2jc5"))))
+                "0wj0y4zcmj4q79wrn3vv3xq4bb0vhhxs8yifafwy9f2sjm83c5p9"))))
     (build-system cmake-build-system)
-    (inputs                                      ; TODO: Add cppunit for tests
+    (native-inputs
-     `(("lua" ,lua-5.1)
+     `(("cppunit" ,cppunit)
-       ("libpng" ,libpng)
+       ("pkg-config" ,pkg-config)))
-       ("openssl" ,openssl)
+    (inputs
-       ("fontconfig" ,fontconfig)
+     `(("libjpeg" ,libjpeg)
        ("libtiff" ,libtiff)
-       ("libjpeg" ,libjpeg-8)
+       ("fontconfig" ,fontconfig)
        ("freetype" ,freetype)
+       ("libpng" ,libpng)
+       ("lua" ,lua-5.1)
+       ("openssl" ,openssl)
        ("zlib" ,zlib)))
     (arguments
      `(#:configure-flags '("-DPODOFO_BUILD_SHARED=ON"

gnu/packages/photo.scm

@@ -2,7 +2,7 @@
 ;;; Copyright © 2014, 2015, 2017 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2015, 2017 Andreas Enge <andreas@enge.fr>
-;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018 Leo Famulari <leo@famulari.name>
@@ -81,7 +81,7 @@
     (native-inputs
      `(("pkg-config" ,pkg-config)))
     (inputs
-     `(("libjpeg" ,libjpeg-8)))         ;for lossy DNGs and old Kodak cameras
+     `(("libjpeg" ,libjpeg)))           ;for lossy DNGs and old Kodak cameras
     (propagated-inputs
      `(("lcms" ,lcms)))                 ;for color profiles
     (home-page "https://www.libraw.org")

gnu/packages/php.scm

@@ -62,7 +62,7 @@
 (define-public php
   (package
     (name "php")
-    (version "7.2.4")
+    (version "7.2.8")
     (home-page "https://secure.php.net/")
     (source (origin
               (method url-fetch)
@@ -70,7 +70,7 @@
                                   name "-" version ".tar.xz"))
               (sha256
                (base32
-                "123s0lbyz4fxr3kk91r4v658mk899dym36lggxnx9pwd2jyv25kr"))
+                "03zv1y8ygzsir60617hinpji3f4irk79zbp3ar1b8zcapq40gfjk"))
               (modules '((guix build utils)))
               (snippet
                '(with-directory-excursion "ext"
@@ -248,6 +248,9 @@
                          ;; iconv breaks the loop after the first error with Termsig=11.
                          "ext/iconv/tests/iconv_strpos_variation4.phpt"
                          "ext/iconv/tests/iconv_strrpos_variation3.phpt"
+                         ;; Expects "invalid multibyte sequence" but got
+                         ;; "unknown error".
+                         "ext/iconv/tests/bug76249.phpt"
 
                          ;; XXX: These test failures appear legitimate, needs investigation.
                          ;; open_basedir() restriction failure.
@@ -288,7 +291,10 @@
                          "ext/mbstring/tests/mb_ereg_variation3.phpt"
                          "ext/mbstring/tests/mb_ereg_replace_variation1.phpt"
                          "ext/mbstring/tests/bug72994.phpt"
-                         "ext/ldap/tests/ldap_set_option_error.phpt"))
+                         "ext/ldap/tests/ldap_set_option_error.phpt"
+
+                         ;; Sometimes cannot start the LDAP server.
+                         "ext/ldap/tests/bug76248.phpt"))
 
              ;; Skip tests requiring network access.
              (setenv "SKIP_ONLINE_TESTS" "1")
@@ -318,7 +324,7 @@
        ("libxpm" ,libxpm)
        ("libxslt" ,libxslt)
        ("libx11" ,libx11)
-       ("oniguruma" ,oniguruma)
+       ("oniguruma" ,oniguruma-5)
        ("openldap" ,openldap)
        ("openssl" ,openssl)
        ("pcre" ,pcre)

gnu/packages/python-crypto.scm

@@ -1,6 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr>
-;;; Copyright © 2015, 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2015, 2016, 2017 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2016, 2017 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2017 Ben Sturmfels <ben@sturm.com.au>
@@ -610,16 +610,17 @@ ECB and OFB).")
 (define-public python-asn1crypto
   (package
     (name "python-asn1crypto")
-    (version "0.22.0")
+    (version "0.24.0")
     (source
       (origin
-        (method url-fetch)
+       (method git-fetch)
-        (uri (string-append "https://github.com/wbond/asn1crypto/archive/"
+       (uri (git-reference
-                            version ".tar.gz"))
+              (url "https://github.com/wbond/asn1crypto.git")
-        (file-name (string-append name "-" version ".tar.gz"))
+              (commit version)))
+        (file-name (git-file-name name version))
         (sha256
          (base32
-          "1kn910896l3knmilla1c9ly20q181s43w1ah08lzkbm1h3j6pcz0"))))
+          "10lai2cs5mnz3gpaffbw1m7b885ls8328q5wxm35vfmcip1f0xmb"))))
     (build-system python-build-system)
     (home-page "https://github.com/wbond/asn1crypto")
     (synopsis "ASN.1 parser and serializer in Python")