From aeb5fd0a24d3c7468cd461db2d25dd74f1cade8c Mon Sep 17 00:00:00 2001 From: Kjartan Oli Agustsson Date: Wed, 18 Jun 2025 00:24:01 +0000 Subject: [PATCH] gnu: checkm: Use pyproject-build-system. * gnu/packages/bioinformatics.scm (checkm): Run guix style. [build-system]: Use pyproject. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I7d3214c29a7e2b3a6065336632f534a2c4cefbbc Signed-off-by: Sharlatan Hellseher --- gnu/packages/bioinformatics.scm | 22 ++++++++++------------ 1 file changed, 10 insertions(+), 12 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4e289baeed..19d29b408b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -21637,19 +21637,17 @@ sequence for paired-ended data, for which this information is not available.") (method url-fetch) (uri (pypi-uri "checkm-genome" version)) (sha256 - (base32 - "0i2nnki639hgjag17wlva2x0ymn37b4krqsf6akxddykhfbkdnkz")))) - (build-system python-build-system) + (base32 "0i2nnki639hgjag17wlva2x0ymn37b4krqsf6akxddykhfbkdnkz")))) + (build-system pyproject-build-system) (arguments - `(#:tests? #f ; Some tests fail for unknown reasons. - #:phases - (modify-phases %standard-phases - (add-before 'check 'set-HOME - (lambda _ - (setenv "HOME" "/tmp")))))) - (inputs - (list python-dendropy python-matplotlib python-numpy python-pysam - python-scipy)) + `(#:tests? #f ;Some tests fail for unknown reasons. + #:phases (modify-phases %standard-phases + (add-before 'check 'set-HOME + (lambda _ + (setenv "HOME" "/tmp")))))) + (inputs (list python-dendropy python-matplotlib python-numpy python-pysam + python-scipy)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://ecogenomics.github.io/CheckM/") (synopsis "Assess the quality of putative genome bins") (description