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Author SHA1 Message Date
Ricardo Wurmus
a8d520a9db
gnu: r-bionero: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.16.0.

Change-Id: Iaed12053adbf1242824bdbb782f16cf1273562eb
2025-05-12 08:55:06 +02:00
Ricardo Wurmus
2d296d1601
gnu: r-biomvrcns: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.48.0.

Change-Id: Id5f3919ac7c6b30c1fb3efa2eb4c73cc681b64bd
2025-05-12 08:55:06 +02:00
Ricardo Wurmus
44b8f22952
gnu: r-biomvcclass: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.76.0.

Change-Id: Icdd652bef1cc0ea5155d9d4ab6266bb180aa44c5
2025-05-12 08:55:06 +02:00
Ricardo Wurmus
f2ce51d3ee
gnu: r-mvcclass: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.82.0.

Change-Id: If609f852dff0ba941f7d0f011cba300d8460adfc
2025-05-12 08:55:06 +02:00
Ricardo Wurmus
d3002ff092
gnu: r-biomformat: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.36.0.

Change-Id: Iaef9c6011c70dbc60824cd516d3685db2d5d9cc3
2025-05-12 08:55:06 +02:00
Ricardo Wurmus
c80a011a37
gnu: r-biodb: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.16.0.
[native-inputs]: Remove r-testthat.

Change-Id: If9e15d02a34efe3fa0ae4e3e7061c36011e28003
2025-05-12 08:55:06 +02:00
Ricardo Wurmus
2b3b9b5633
gnu: r-biocthis: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.18.0.

Change-Id: I2cbb6bd3c70a859ae340c6ea773c287df47b67c9
2025-05-12 08:55:06 +02:00
Ricardo Wurmus
4fa000ce59
gnu: r-bcrank: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-bcrank): Update to 1.70.0.

Change-Id: Ia0745ad7967108fbcd551f87c5e4f0062b1f1df9
2025-05-12 08:55:05 +02:00
Ricardo Wurmus
c606f5ce33
gnu: r-bbcanalyzer: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-bbcanalyzer): Update to 1.38.0.

Change-Id: I5da7277082541aa00edfe5c16ab15f3b2ebb7a2f
2025-05-12 08:55:05 +02:00
Ricardo Wurmus
fe73224f84
gnu: r-baynorm: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-baynorm): Update to 1.26.0.

Change-Id: I33a7d1e0280d52b9724dcf9bc85294fa8c66d4a2
2025-05-12 08:55:05 +02:00
Ricardo Wurmus
f1339b4274
gnu: r-bayesspace: Update to 1.17.0.
* gnu/packages/bioconductor.scm (r-bayesspace): Update to 1.17.0.

Change-Id: I4f170f85b9bbb2ff24d47e6f7c87b1428df5cb9d
2025-05-12 08:55:05 +02:00
Ricardo Wurmus
5f85c18e5b
gnu: r-bayesknockdown: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-bayesknockdown): Update to 1.34.0.

Change-Id: I69faad00a359c1fff392e2cffc57db64f8fc1d93
2025-05-12 08:55:05 +02:00
Ricardo Wurmus
27306fb9d8
gnu: r-basicstarrseq: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-basicstarrseq): Update to 1.36.0.

Change-Id: I085c47606a7fdf99acba63c173bfc0f740b9215a
2025-05-12 08:55:05 +02:00
Ricardo Wurmus
7350df0f7b
gnu: r-basics: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-basics): Update to 2.20.0.

Change-Id: I7e1b0d75535bcba050ee23a5e72e0d03a769274d
2025-05-12 08:55:05 +02:00
Ricardo Wurmus
4a952cad4d
gnu: r-basic4cseq: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-basic4cseq): Update to 1.44.0.

Change-Id: I786e49a838cc9afc924e3be658de146173372196
2025-05-12 08:55:05 +02:00
Ricardo Wurmus
6f1a39be2d
gnu: r-genetclassifier: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.48.0.
[native-inputs]: Add r-biocgenerics.

Change-Id: Ia528e85b940ebcb45a54fd24e5ba20e459294d23
2025-05-12 08:55:05 +02:00
Ricardo Wurmus
819b044569
gnu: r-minet: Update to 3.66.0.
* gnu/packages/bioconductor.scm (r-minet): Update to 3.66.0.

Change-Id: Ie8ce9c81d66fb7db79e6b6c15e4d4506196e3159
2025-05-12 08:55:04 +02:00
Ricardo Wurmus
cf0d6f5920
gnu: r-biobtreer: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.20.0.
[native-inputs]: Remove r-testthat.

Change-Id: I1b7708d784e836531bba093d44f531960c259207
2025-05-12 08:55:04 +02:00
Ricardo Wurmus
667df6d729
gnu: r-bgeedb: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.34.0.

Change-Id: Ib27370ce9e499167912a154b4b0356848186776a
2025-05-12 08:55:04 +02:00
Ricardo Wurmus
f5cef4aac5
gnu: r-megadepth: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.18.0.

Change-Id: I122c13d03491942e16d350b2cc950cffc6d6159d
2025-05-12 08:55:04 +02:00
Ricardo Wurmus
a3a00eeebd
gnu: r-ballgown: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.40.0.

Change-Id: I6f356cc04b30a39e120a7d2fa62cb2f74c709b15
2025-05-12 08:55:04 +02:00
Ricardo Wurmus
63b85de4be
gnu: r-guitar: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.24.0.

Change-Id: I9c1179dc0ed9f74f37f93eaddf49cd6193070be0
2025-05-12 08:55:04 +02:00
Ricardo Wurmus
bed701495b
gnu: r-snpstats: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.58.0.

Change-Id: I238fa4a052f84a72fd43dd8587fac827db62a7fb
2025-05-12 08:55:04 +02:00
Ricardo Wurmus
47ce8d23fc
gnu: r-pathview: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.48.0.
[native-inputs]: Add r-biocgenerics and r-gage.

Change-Id: Ibc83d6216801894e51035fe77e32d7779e3447d6
2025-05-12 08:55:04 +02:00
Ricardo Wurmus
11fdeb0bb7
gnu: r-parody: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-parody): Update to 1.66.0.

Change-Id: Ie872040f4b0bc2ee38b0233df6c6b22fcda43ae6
2025-05-12 08:55:04 +02:00
Ricardo Wurmus
3f9455ffe0
gnu: r-ldblock: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.38.0.

Change-Id: I0916710af2883810e93896d0dc5c54ca3bd2fbcb
2025-05-12 08:55:03 +02:00
Ricardo Wurmus
84a7c60067
gnu: r-kegggraph: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.68.0.
[native-inputs]: Add r-biomart, r-org-hs-eg-db, and r-rcolorbrewer.

Change-Id: I318b307f4b74dc33e1ed740bdbdf6676c06e26e4
2025-05-12 08:55:03 +02:00
Ricardo Wurmus
b76dd06f7f
gnu: r-gwascat: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.40.0.
[propagated-inputs]: Add r-data-table and r-tibble.

Change-Id: I5290ef881c97703cfc991000dbc30f3b72741222
2025-05-12 08:55:03 +02:00
Ricardo Wurmus
8bc1ea48f5
gnu: r-gviz: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.52.0.

Change-Id: I7a61c8f55aa9cd8f451d49a9618f2f59394f776c
2025-05-12 08:55:03 +02:00
Ricardo Wurmus
eaf1d61a16
gnu: r-ggbio: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.56.0.
[native-inputs]: Add r-bsgenome-hsapiens-ucsc-hg19, r-ensdb-hsapiens-v75,
r-homo-sapiens, and r-txdb-hsapiens-ucsc-hg19-knowngene.

Change-Id: I7daf0aa13d5dc75ee6dd985b0bdafacfd9f8cf82
2025-05-12 08:55:03 +02:00
Ricardo Wurmus
078e045694
gnu: r-erma: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-erma): Update to 1.24.0.

Change-Id: Ida576b8a9fe2478b6660654cf6a24d6da63d7352
2025-05-12 08:55:03 +02:00
Ricardo Wurmus
3cbcf40a28
gnu: r-catalyst: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.32.0.

Change-Id: I439774dfe215761399bf021162c2e33db7ec8f8a
2025-05-12 08:55:03 +02:00
Ricardo Wurmus
d90899f6ff
gnu: r-msmstests: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.46.0.

Change-Id: I36c02fd0726392f0928122904a621871d226f1e5
2025-05-12 08:55:03 +02:00
Ricardo Wurmus
0e442f0520
gnu: r-msmseda: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.46.0.

Change-Id: I6628e82ab5cde3594b616b43b3f7a978f6705d08
2025-05-12 08:55:03 +02:00
Ricardo Wurmus
de91f6d773
gnu: r-biocio: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.18.0.

Change-Id: I41bf42bf62c55b2f4d655a355b0de8ab0687d2b6
2025-05-12 08:55:02 +02:00
Ricardo Wurmus
86ed34d8fa
gnu: r-msfeatures: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.16.0.

Change-Id: Id39302cf03becd0b372289cea28b8020bf7bbfe6
2025-05-12 08:55:02 +02:00
Ricardo Wurmus
e57263270c
gnu: r-delayedmatrixstats: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.30.0.

Change-Id: Id72ff2edcee6e60dc19c9158e8708cd1bfe7a1b7
2025-05-12 08:55:02 +02:00
Ricardo Wurmus
9704ecfd27
gnu: r-spatialexperiment: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-spatialexperiment): Update to 1.18.0.
[native-inputs]: Remove r-dropletutils.

Change-Id: I7cf73b653cba4d663af8b14b1e319c240e18a5b7
2025-05-12 08:55:02 +02:00
Ricardo Wurmus
544584ed4a
gnu: r-sparsematrixstats: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.20.0.

Change-Id: I2186b03388e15899e1d5399a44764b8525ca99c3
2025-05-12 08:55:02 +02:00
Ricardo Wurmus
99b535afdf
gnu: r-sparsearray: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.8.0.

Change-Id: Iac024ce458c6eb3ad59560c38faa06c09a8dbb23
2025-05-12 08:55:02 +02:00
Ricardo Wurmus
433ab5c4d6
gnu: r-scater: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-scater): Update to 1.36.0.

Change-Id: I622c060ec9a0673056217f128cbf6c556bdde04b
2025-05-12 08:55:02 +02:00
Ricardo Wurmus
8ff83e5e23
gnu: r-scuttle: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.18.0.

Change-Id: I28162c70da6324163b49099d88dd685db9aa3606
2025-05-12 08:55:02 +02:00
Ricardo Wurmus
df681f4360
gnu: r-singlecellexperiment: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.30.0.
[native-inputs]: Add r-matrix.

Change-Id: I94de27beb2511d6784a76f89da4a5b4ccab6ccf5
2025-05-12 08:55:02 +02:00
Ricardo Wurmus
025e8d08a4
gnu: r-maftools: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.24.0.

Change-Id: Ibc6a3512835913bdf2696c3aa2adfc66f58b13ed
2025-05-12 08:55:01 +02:00
Ricardo Wurmus
c2ff144ad7
gnu: r-beaddatapackr: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-beaddatapackr): Update to 1.60.0.

Change-Id: I0a99785056c5dc3e8b541699503db9dc48f4abde
2025-05-12 08:55:01 +02:00
Ricardo Wurmus
77a6e3a15d
gnu: r-beadarray: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-beadarray): Update to 2.58.0.

Change-Id: I3f43275bef48954f1e448ed7866f11f759385ba0
2025-05-12 08:55:01 +02:00
Ricardo Wurmus
1a7fb162c6
gnu: r-beachmat-hdf5: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-beachmat-hdf5): Update to 1.6.0.
[native-inputs]: Add r-matrix and r-rhdf5.

Change-Id: Icb81f39f3fb106e82f7e1afa2dacaf2782eee581
2025-05-12 08:55:01 +02:00
Ricardo Wurmus
0bdf7d5873
gnu: r-beachmat: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.24.0.

Change-Id: If297caca17732534631653e8d5746ab4a6594569
2025-05-12 08:55:01 +02:00
Ricardo Wurmus
9881a9dba9
gnu: r-hitc: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.52.0.

Change-Id: Id6e5e49e763d37b47696b1e81d9aa9b2f1225035
2025-05-12 08:55:01 +02:00
Ricardo Wurmus
c9a7db1c61
gnu: r-fithic: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.34.0.

Change-Id: I0fe71a920d0c34e3c6c7da321f9bc45435509be8
2025-05-12 08:55:01 +02:00