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Author SHA1 Message Date
Ricardo Wurmus
297b39685c
gnu: r-allelicimbalance: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.46.0.

Change-Id: I62ec0fba22688fd30a5a861ffb87d9db50ef53d4
2025-05-12 08:54:50 +02:00
Ricardo Wurmus
69699ef474
gnu: r-annotationtools: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.82.0.

Change-Id: Ie0a73deec313a981d199e38cc5f598a3e8283575
2025-05-12 08:54:49 +02:00
Ricardo Wurmus
a3838c1eea
gnu: r-gofuncr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.28.0.
[native-inputs]: Remove r-homo-sapiens.

Change-Id: I0d2ee45976dfa3890efe3a6d587c944089d56676
2025-05-12 08:54:49 +02:00
Ricardo Wurmus
b5a53dd6b1
gnu: r-atacseqqc: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.32.0.

Change-Id: Id52d76183ee06adf0b50680a73e8a4b38a6cd3ae
2025-05-12 08:54:49 +02:00
Ricardo Wurmus
be596996cf
gnu: r-genomicstate: Update to 0.99.16.
* gnu/packages/bioconductor.scm (r-genomicstate): Update to 0.99.16.
[propagated-inputs]: Add r-txdbmaker.

Change-Id: I6388ddc4206068b60936ccfe39d1d7332a8e9688
2025-05-12 08:54:49 +02:00
Ricardo Wurmus
8f4b0bab10
gnu: r-genomicscores: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.20.0.

Change-Id: I54a64bb8ebe9ae2188a49357e8d42ea0a3472c46
2025-05-12 08:54:49 +02:00
Ricardo Wurmus
30cef51c2b
gnu: r-motifbreakr: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.22.0.

Change-Id: I0ee058fea8c10fbece222c1e191202008af1093c
2025-05-12 08:54:49 +02:00
Ricardo Wurmus
d59a3c2814
gnu: r-rgadem: Update to 2.55.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.55.0.

Change-Id: Ie7758dfc9849e71554afb64756971e18abbe6348
2025-05-12 08:54:49 +02:00
Ricardo Wurmus
ee84fcbde4
gnu: r-bacon: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.36.0.

Change-Id: I239f3f30b684d169afb2806d8ee05657cc2806a6
2025-05-12 08:54:49 +02:00
Ricardo Wurmus
fde2e546ad
gnu: r-abseqr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.26.0.

Change-Id: I7aa74814374744be512c1bab13b8b70f5664def5
2025-05-12 08:54:49 +02:00
Ricardo Wurmus
71cb0563ed
gnu: r-a4: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.56.0.

Change-Id: I2ae3804b07ac818a15f44336b7d55d2144a575b5
2025-05-12 08:54:48 +02:00
Ricardo Wurmus
5bb6acf021
gnu: r-a4base: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.56.0.

Change-Id: Ib3d63a8ba2e723506ff43ba248cec1432d68c430
2025-05-12 08:54:48 +02:00
Ricardo Wurmus
a963d5db20
gnu: r-a4reporting: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.56.0.

Change-Id: Id57551c22481998a13b4675dd878a4f80c2d1343
2025-05-12 08:54:48 +02:00
Ricardo Wurmus
61ef74d477
gnu: r-a4preproc: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.56.0.

Change-Id: Id45d5177875e636c2192c7372172644bc0d704ef
2025-05-12 08:54:48 +02:00
Ricardo Wurmus
970f587b48
gnu: r-a4classif: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.56.0.

Change-Id: I2293a727f2735d63dbf469f57ef1ff9d06a2d47f
2025-05-12 08:54:48 +02:00
Ricardo Wurmus
7082582f33
gnu: r-a4core: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.56.0.

Change-Id: Ic1306b520e93837dc120ba5c4f52b0d66b5bc473
2025-05-12 08:54:48 +02:00
Ricardo Wurmus
435e0bb8a2
gnu: r-annaffy: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.80.0.

Change-Id: I2a7a24e976fcee1851c0c97e30c065258b482799
2025-05-12 08:54:48 +02:00
Ricardo Wurmus
18f8ba2e07
gnu: r-mlinterfaces: Update to 1.88.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.88.0.
[native-inputs]: Add r-snow.

Change-Id: If7cd9b628719a37ab56866bc28138223525a8975
2025-05-12 08:54:48 +02:00
Ricardo Wurmus
da027815ce
gnu: r-clusterexperiment: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.28.0.

Change-Id: If8153036fbb2374ae5fab2e8e774853b0f990276
2025-05-12 08:54:47 +02:00
Ricardo Wurmus
e0b2331224
gnu: r-clusterprofiler: Update to 4.16.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.16.0.

Change-Id: I89f243b3fbb230b2abd39cddb8d0741edb43590e
2025-05-12 08:54:47 +02:00
Ricardo Wurmus
17eb90dd75
gnu: r-enrichplot: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.28.0.

Change-Id: I1d69c2d436f7c4581aee89deda5ebf35b418ec7d
2025-05-12 08:54:47 +02:00
Ricardo Wurmus
40f40f3332
gnu: r-enrichedheatmap: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-enrichedheatmap): Update to 1.38.0.

Change-Id: Icc0c3f9ea7562c559055b3971b3884ba0765ade6
2025-05-12 08:54:47 +02:00
Ricardo Wurmus
11124b6d30
gnu: r-dose: Update to 4.2.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 4.2.0.

Change-Id: Ife4e6a19d0579b553d2bc108377ab3f0091b8f89
2025-05-12 08:54:47 +02:00
Ricardo Wurmus
886cfcc597
gnu: r-fgsea: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.34.0.

Change-Id: I27190e14795f59be354f8cc5eba620c3950944b7
2025-05-12 08:54:47 +02:00
Ricardo Wurmus
edccc1d74b
gnu: r-fcscan: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.22.0.
[native-inputs]: Add r-biocgenerics.

Change-Id: Ic9dfe8e594a6abc296964aa38eb730c0bc0c375e
2025-05-12 08:54:47 +02:00
Ricardo Wurmus
6c3ec8a511
gnu: r-anota2seq: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-anota2seq): Update to 1.30.0.

Change-Id: I38bc749212c7ad0cce57354c8f7239da47e99675
2025-05-12 08:54:47 +02:00
Ricardo Wurmus
79c02e0b52
gnu: r-anota: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.56.0.

Change-Id: I0be49bd8f801d887dc1a4fb764ab42353952e508
2025-05-12 08:54:47 +02:00
Ricardo Wurmus
aeb5189544
gnu: r-gosemsim: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.34.0.

Change-Id: Idfc6d1713ab40e679bee511c21fc14130eb1d8f3
2025-05-12 08:54:46 +02:00
Ricardo Wurmus
1b05fe2641
gnu: r-heatplus: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.16.0.

Change-Id: I1d248678e28d98807fbaa3565816dca0b7a88871
2025-05-12 08:54:46 +02:00
Ricardo Wurmus
6e8ecb8359
gnu: r-tradeseq: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.22.0.
[native-inputs]: Remove r-delayedmatrixstats and r-dplyr.

Change-Id: Iacebd28b7bcfa95158526f701456bfc45221fa72
2025-05-12 08:54:46 +02:00
Ricardo Wurmus
6bf0eb1ce6
gnu: r-ioniser: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.32.0.

Change-Id: Ic7d3362a5b273c72dfc5980ac7ffaf7cf9cdbce3
2025-05-12 08:54:46 +02:00
Ricardo Wurmus
e36f33e067
gnu: r-linnorm: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.32.0.

Change-Id: I5e7ed478f28c1122bded7f3802777c9d18a6579b
2025-05-12 08:54:46 +02:00
Ricardo Wurmus
4545a67f76
gnu: r-lumi: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.60.0.

Change-Id: I45d6716133a4b0070ebcfd5dbe7fd6220ff34fb7
2025-05-12 08:54:46 +02:00
Ricardo Wurmus
287642a425
gnu: r-lefser: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.18.0.
[propagated-inputs]: Add r-ape, r-biocgenerics, r-ggrepel, r-mia, r-purrr, r-tidyselect,
and r-treeio.

Change-Id: Id01e8efc0254b9cf0537583e313d7ff58f06e78f
2025-05-12 08:54:46 +02:00
Ricardo Wurmus
afbc05ad5e
gnu: r-missmethyl: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-missmethyl): Update to 1.42.0.

Change-Id: Ib4f530dad52eda462f9c37e6c259ba05748bcd5e
2025-05-12 08:54:46 +02:00
Ricardo Wurmus
f7dab86640
gnu: r-minfi: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.54.0.

Change-Id: Ibc97f51533a1be5bb00a263a467592ad75962bae
2025-05-12 08:54:46 +02:00
Ricardo Wurmus
c41476d47d
gnu: r-milor: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-milor): Update to 2.4.0.

Change-Id: Ic2940529b3b8fa0fd126389ce6dcb57cec68952a
2025-05-12 08:54:45 +02:00
Ricardo Wurmus
c5cb9f4285
gnu: r-microbiome: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.30.0.

Change-Id: I959abf857119fc6a04c1c8900d0ddfb8f7c64390
2025-05-12 08:54:45 +02:00
Ricardo Wurmus
d938d1e6e5
gnu: r-bumpymatrix: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-bumpymatrix): Update to 1.16.0.

Change-Id: If67b892eedbadccf2d9c1ac2a2566705f419197c
2025-05-12 08:54:45 +02:00
Ricardo Wurmus
cc5a0b9a39
gnu: r-siggenes: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.82.0.

Change-Id: I1db58f6565d96feda1607d28b3a47243c8398349
2025-05-12 08:54:45 +02:00
Ricardo Wurmus
fb8866457b
gnu: r-geoquery: Update to 2.76.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.76.0.

Change-Id: I528d5a8b59e1ebe075e98a6061bbef2dd02585cc
2025-05-12 08:54:45 +02:00
Ricardo Wurmus
a187086cb0
gnu: r-scone: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.32.0.
[propagated-inputs]: Add r-sparsearray.
[native-inputs]: Add r-delayedarray.

Change-Id: I8809f0c15743cd2c41ffdabf8f660860ea507dd9
2025-05-12 08:54:45 +02:00
Ricardo Wurmus
77436fb0db
gnu: r-scdd: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.32.0.
[native-inputs]: Add r-gridextra.

Change-Id: Ib64f69f9f217d299965cde6a188fdd4abc7839fd
2025-05-12 08:54:45 +02:00
Ricardo Wurmus
8da1b771c5
gnu: r-noiseq: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.52.0.

Change-Id: I52e83bb95a2bf98c5c2f1d8da7e851c5de1c865b
2025-05-12 08:54:45 +02:00
Ricardo Wurmus
2dba34f9ab
gnu: r-sangerseqr: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-sangerseqr): Update to 1.44.0.
[native-inputs]: Add r-biocgenerics.

Change-Id: I801f477310edd3ce3a439fcafcb88d5662b8bb00
2025-05-12 08:54:45 +02:00
Ricardo Wurmus
1dfab386e0
gnu: r-monocle: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.36.0.

Change-Id: I7712b16c1176b7790c32d27b914e6c3537cbc6eb
2025-05-12 08:54:44 +02:00
Ricardo Wurmus
375379c1d5
gnu: r-batchelor: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.24.0.

Change-Id: I4900dbb3e58e11d37d6929d56a75c64a69e8e703
2025-05-12 08:54:44 +02:00
Ricardo Wurmus
0f5d2b6db9
gnu: r-residualmatrix: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.18.0.

Change-Id: I82f6fafef18a50aa1a20f1369976d40f1bafee5c
2025-05-12 08:54:44 +02:00
Ricardo Wurmus
43748f0a96
gnu: r-icobra: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.36.0.

Change-Id: I47aae6e42fd1d4ba0e4ea3972d5f1666b2b90b68
2025-05-12 08:54:44 +02:00
Ricardo Wurmus
89445ca312
gnu: r-ihw: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.36.0.
[native-inputs]: Remove r-ggplot2 and r-scales.

Change-Id: I84dac6ccfe1ccc1350bc42cca7b9195cf2754fc8
2025-05-12 08:54:44 +02:00