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Author SHA1 Message Date
Ricardo Wurmus
4c5efe1cdb
gnu: r-slingshot: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.16.0.
[native-inputs]: Add r-clusterexperiment and r-rgl.

Change-Id: I7a67000a0a004920e064ff434c9cbf73866da0cc
2025-05-12 08:54:38 +02:00
Ricardo Wurmus
da242c84eb
gnu: r-scds: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-scds): Update to 1.24.0.

Change-Id: I96910c6db1bc499eea52b443f1af0a18213fb907
2025-05-12 08:54:38 +02:00
Ricardo Wurmus
eabc6890f0
gnu: r-trnadbimport: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-trnadbimport): Update to 1.26.0.
[native-inputs]: Add r-biocgenerics.

Change-Id: I76a351f6bf1d5fe30484a95ae8d23185d3a6a966
2025-05-12 08:54:38 +02:00
Ricardo Wurmus
4ab76057f8
gnu: r-trna: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-trna): Update to 1.26.0.

Change-Id: I9336023432f82dc58401c0754679fe662f523f13
2025-05-12 08:54:38 +02:00
Ricardo Wurmus
7a456b8575
gnu: r-trackviewer: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.44.0.

Change-Id: Ibd7e0445eba8e421f966468a4d0e691418086919
2025-05-12 08:54:38 +02:00
Ricardo Wurmus
e1f16a4721
gnu: r-toast: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-toast): Update to 1.22.0.

Change-Id: Iba29ae9fc4e8f51dd4b4cd42586112dbc57c75c3
2025-05-12 08:54:38 +02:00
Ricardo Wurmus
dd1d630097
gnu: r-tkwidgets: Update to 1.86.0.
* gnu/packages/bioconductor.scm (r-tkwidgets): Update to 1.86.0.

Change-Id: Iaeab4f3a08134a1f421046ee2d7077585d707255
2025-05-12 08:54:38 +02:00
Ricardo Wurmus
2719f4379f
gnu: r-tcgautils: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.28.0.

Change-Id: I3d70b1faae49f95d4390f32065219f3560c44dbd
2025-05-12 08:54:38 +02:00
Ricardo Wurmus
13b200e6cd
gnu: r-singscore: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-singscore): Update to 1.28.0.

Change-Id: I2daa4d4743552daf8346eeb54289ac214f65fe5b
2025-05-12 08:54:37 +02:00
Ricardo Wurmus
9eccd5257d
gnu: r-simplifyenrichment: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 2.2.0.

Change-Id: If60723f59022e5da11c9c7d1ff1fdc9f3f076333
2025-05-12 08:54:37 +02:00
Ricardo Wurmus
fbe49f632c
gnu: r-simona: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-simona): Update to 1.6.0.

Change-Id: I5885373b6c954fa34171c792bf0dcdf0e9117096
2025-05-12 08:54:37 +02:00
Ricardo Wurmus
0074d693e6
gnu: r-sictools: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-sictools): Update to 1.38.0.
[native-inputs]: Add r-biocgenerics.

Change-Id: I04d0f2b38f0728eaf729cbaddc652fccf8d01052
2025-05-12 08:54:37 +02:00
Ricardo Wurmus
bdd6fff42d
gnu: r-shinymethyl: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.44.0.

Change-Id: I2397bd0f885f81675d6c7770b92f416165b46e5a
2025-05-12 08:54:37 +02:00
Ricardo Wurmus
13ff0dc2a5
gnu: r-sesame: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-sesame): Update to 1.26.0.

Change-Id: Icbe4db2bafacec0ec1d195967b9464940c3f937b
2025-05-12 08:54:37 +02:00
Ricardo Wurmus
57d1489d89
gnu: r-seqlogo: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.74.0.

Change-Id: I719d63d90f0acf42fdeeb28ce39fd41fbf8134c6
2025-05-12 08:54:37 +02:00
Ricardo Wurmus
efc669ed94
gnu: r-seqarray: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.48.0.
[propagated-inputs]: Add r-digest.

Change-Id: I78d2fb17a2bd6c5fad67ca3d9a9b8f6bfc47c6f1
2025-05-12 08:54:37 +02:00
Ricardo Wurmus
ec97c8cff9
gnu: r-scry: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-scry): Update to 1.20.0.

Change-Id: Ie44c2f2ae5b27bad9b86cf3a548c35dde822d0bb
2025-05-12 08:54:37 +02:00
Ricardo Wurmus
43a5e062a1
gnu: r-scrnaseq: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-scrnaseq): Update to 2.22.0.
[native-inputs]: Add r-biocmanager.

Change-Id: I9b36b58beb11a15c68bff13e3b87dee2fd8524fe
2025-05-12 08:54:36 +02:00
Ricardo Wurmus
72c63864da
gnu: r-scmap: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.30.0.

Change-Id: I21d57656972d4ff30b483c9c391c13315cbc80b2
2025-05-12 08:54:36 +02:00
Ricardo Wurmus
93ac6db232
gnu: r-scdblfinder: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.22.0.

Change-Id: I633e5e73fa7998b547b4530a3a8f156f29d1acb7
2025-05-12 08:54:36 +02:00
Ricardo Wurmus
cec137fd91
gnu: r-scannotatr: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.14.0.

Change-Id: Ica76113863ebc9248c90cc17851a279ac5d094c3
2025-05-12 08:54:36 +02:00
Ricardo Wurmus
96d96cac02
gnu: r-saturn: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-saturn): Update to 1.16.0.
[native-inputs]: Add r-delayedarray.

Change-Id: I6ebf17e9e2e521caae8f7aea80b82a59f564c063
2025-05-12 08:54:36 +02:00
Ricardo Wurmus
0182f86f66
gnu: r-rtcgatoolbox: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-rtcgatoolbox): Update to 2.38.0.

Change-Id: I5333b2d9249455fd22631297459d87a10b0baea3
2025-05-12 08:54:36 +02:00
Ricardo Wurmus
b5b1af0cde
gnu: r-rsamtools: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.24.0.
[propagated-inputs]: Remove r-zlibbioc.

Change-Id: I999f48d52cd7f2269b8c7b52a46906eec4baaf40
2025-05-12 08:54:36 +02:00
Ricardo Wurmus
4c4ffc757d
gnu: r-rnaagecalc: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-rnaagecalc): Update to 1.20.0.

Change-Id: I3e5886955911efdc584675e38362c7e30f8e7835
2025-05-12 08:54:36 +02:00
Ricardo Wurmus
7fdcbd2382
gnu: r-rhdf5: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.52.0.

Change-Id: I315a2ea60498e944fdca3c21c7992bb06c0c2cda
2025-05-12 08:54:36 +02:00
Ricardo Wurmus
ec58ca0593
gnu: r-reportingtools: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.48.0.

Change-Id: I842b614435ca10bf856b722ceadd4999d380498c
2025-05-12 08:54:35 +02:00
Ricardo Wurmus
a1051b56e0
gnu: r-regioner: Update to 1.39.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.39.0.
[native-inputs]: Remove r-biocmanager.

Change-Id: I2238a61f8ed1281dd565b959e1371d3a40576737
2025-05-12 08:54:35 +02:00
Ricardo Wurmus
708ed21e57
gnu: r-recount: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-recount): Update to 1.34.0.

Change-Id: I386e121ce2bbb69f0561248d45f2fa8aa882993e
2025-05-12 08:54:35 +02:00
Ricardo Wurmus
1fa804781d
gnu: r-rcy3: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-rcy3): Update to 2.28.0.
[native-inputs]: Add r-runit.

Change-Id: I7fbf8bb82a46c550e052e22b70ac220ec749ae47
2025-05-12 08:54:35 +02:00
Ricardo Wurmus
7182557046
gnu: r-rcas: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.34.0.
[native-inputs]: Remove r-biocmanager.

Change-Id: I66a554c9c247d51c645b332ac34372f5ebb1fa88
2025-05-12 08:54:35 +02:00
Ricardo Wurmus
feb97cb7df
gnu: r-rbgl: Update to 1.84.0.
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.84.0.
[native-inputs]: Add r-biocgenerics.

Change-Id: Idfdafc142fa0e3fc341118a2eeb0dc239e717499
2025-05-12 08:54:35 +02:00
Ricardo Wurmus
074537fce0
gnu: r-protgenerics: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.40.0.

Change-Id: Ide9e7ececf32c64eaefaffcda3f8f582cd8d46d9
2025-05-12 08:54:35 +02:00
Ricardo Wurmus
d2719f3685
gnu: r-protgear: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-protgear): Update to 1.12.0.

Change-Id: I9259fec62c8e0456aa45eb51e4957d39b2a0085f
2025-05-12 08:54:35 +02:00
Ricardo Wurmus
fcdf1d041b
gnu: r-powertcr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-powertcr): Update to 1.28.0.

Change-Id: Idb3b72539bc6dab7d333a7c73ba1d7aff4ad84e4
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
426466e988
gnu: r-piano: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-piano): Update to 2.24.0.
[native-inputs]: Add r-biomart.

Change-Id: Ifedc7f9af862306d717e0c0f0e6c0fdd13fd1110
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
404243f3be
gnu: r-pfamanalyzer: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-pfamanalyzer): Update to 1.8.0.

Change-Id: I04f9e3fec5c9f48594eb622466c0efffec2b6399
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
65108c58b9
gnu: r-pcamethods: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 2.0.0.

Change-Id: I87726ec31fc6ce2ed11013505f0f113c1ea22e23
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
f541765d30
gnu: r-pcaexplorer: Update to 3.2.0.
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 3.2.0.

Change-Id: I94c9fc78cc21754f57b89d3c79a85f70d34935b1
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
68f24ab232
gnu: r-oscope: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-oscope): Update to 1.38.0.

Change-Id: Ie63bd19aa4f96c6a75f9a523c9f6456953d84bbb
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
0fb72a2f09
gnu: r-organism-dplyr: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.36.0.

Change-Id: I8c9511b341a095cc22510ce932e5808b89383e26
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
e7a8b91be8
gnu: r-mzr: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.42.0.
[native-inputs]: Remove r-codetools.

Change-Id: I7f0322706c0f78add16e1961b75f84cf5d47fcfc
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
1224783dda
gnu: r-mzid: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.46.0.

Change-Id: I6780216b71c64cbb24d70ffd73794ae8e4afd842
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
2ce7a6ded9
gnu: r-msnid: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.42.0.
[native-inputs]: Remove r-runit; add r-digest.

Change-Id: I8a6f5a7ca0a67251aca31c748658a0d50de03dc8
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
ea35ce9f49
gnu: r-msexperiment: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-msexperiment): Update to 1.10.0.
[native-inputs]: Remove r-s4vectors, r-spectra, and r-summarizedexperiment.

Change-Id: Ie0a1fef71dae8b9dbf84e3d9bb7b7bbfb9717b11
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
1f89b59863
gnu: r-msa: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-msa): Update to 1.40.0.
[native-inputs]: Add r-ape, r-pwalign, and r-seqinr.

Change-Id: I7c0e4cdba4b4588bb553ba5c588f6122bd7302be
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
74f507b1ae
gnu: r-muscat: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.22.0.

Change-Id: I56e0e54ef73abb3f56c2f87692c3a16d27db75ad
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
247002f43a
gnu: r-mosdef: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-mosdef): Update to 1.4.0.

Change-Id: Ibda20c28ef561050c07bd5a0eb381736603aac7d
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
f287baeaff
gnu: r-modstrings: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-modstrings): Update to 1.24.0.

Change-Id: Id13e794acf3dabfd60495b36de498daeda03808e
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
50c7c7f413
gnu: r-mmuphin: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.22.0.

Change-Id: I827e3434a8e52c3ceef6f2efe1acb958f04bdf4c
2025-05-12 08:54:33 +02:00