Ricardo Wurmus
|
d5ded222d6
|
gnu: r-trnadbimport: Add missing input.
* gnu/packages/bioconductor.scm (r-trnadbimport)[native-inputs]: Add
r-httptest.
Change-Id: Ib654aa76d9a960c3d6cbc50264536af400bfd3e5
|
2024-12-03 16:59:49 +01:00 |
|
Ricardo Wurmus
|
ce60b11460
|
gnu: r-anvil: Add missing input.
* gnu/packages/bioconductor.scm (r-anvil)[native-inputs]: Add r-testthat.
Change-Id: Id8cc0f631a7923204d0778d3e2da1b15c7d4fc68
|
2024-12-03 16:59:48 +01:00 |
|
Ricardo Wurmus
|
8607b2eece
|
gnu: r-biobroom: Add missing inputs.
* gnu/packages/bioconductor.scm (r-biobroom)[native-inputs]: Add r-deseq2 and
r-edger.
Change-Id: I231026845896b2162d34724ba405a2f5bbacc56e
|
2024-12-03 16:59:48 +01:00 |
|
Ricardo Wurmus
|
b6cd326070
|
gnu: r-enhancedvolcano: Add missing input.
* gnu/packages/bioconductor.scm (r-enhancedvolcano)[native-inputs]: Add
r-biocgenerics.
Change-Id: I416f27e0e0f2e0c237e29f9ca6b5edeccebbec76
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
3f2531f918
|
gnu: r-biocset: Add missing inputs.
* gnu/packages/bioconductor.scm (r-biocset)[native-inputs]: Add r-gseabase and
r-org-hs-eg-db.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I062af0403952e209b07488afa5b939bee60cadc0
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
965dd8b3bc
|
gnu: r-graphite: Disable tests.
* gnu/packages/bioconductor.scm (r-graphite)[native-inputs]: Add r-checkmate.
[arguments]: Disable tests.
Change-Id: Ia69467f2c1516ff3510a3e7ae422f9d031fecc1f
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
81a4b8be20
|
gnu: r-gseabase: Add missing inputs.
* gnu/packages/bioconductor.scm (r-gseabase)[native-inputs]: Add r-go-db,
r-hgu95av2, r-hgu95av2-db, r-org-hs-eg-db, and r-runit.
Change-Id: I302caa7aa57487009272a3c361bd864a474afcf2
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
5a29c7f69f
|
gnu: Add r-hgu95av2.
* gnu/packages/bioconductor.scm (r-hgu95av2): New variable.
Change-Id: Ibbadbfd247755c54e56cc22ec59172c4da098bdf
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
cb630fa340
|
gnu: r-riboseqr: Add missing input.
* gnu/packages/bioconductor.scm (r-riboseqr)[native-inputs]: Add r-biocstyle.
Change-Id: I969eb0cea1051578d785a04adb5fd7770b18ab62
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
d4893e7340
|
gnu: r-biocviews: Disable tests.
* gnu/packages/bioconductor.scm (r-biocviews)[arguments]: Disable tests.
Change-Id: Ic66fd71421b041098da31a38d7101b1bf013110a
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
f611dd3da3
|
gnu: r-anf: Disable tests.
* gnu/packages/bioconductor.scm (r-anf)[arguments]: Disable tests.
Change-Id: Id30bf651b086860224d2d52cb59d50221311736b
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
d36f41c3fe
|
gnu: r-flowcore: Disable tests.
* gnu/packages/bioconductor.scm (r-flowcore)[arguments]: Disable tests.
Change-Id: If8c97ed20a782357cc2c01e2bdd361d59419c260
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
5d73904f72
|
gnu: r-bumphunter: Add missing inputs.
* gnu/packages/bioconductor.scm (r-bumphunter)[native-inputs]: Add
r-doparallel, r-runit, and r-txdb-hsapiens-ucsc-hg19-knowngene.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I86c3515ad5ad124742b244c085f0084342680168
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
3f33e65e28
|
gnu: r-batchelor: Add missing inputs.
* gnu/packages/bioconductor.scm (r-batchelor)[native-inputs]: Add r-bluster
and r-scran.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: Id23065c7b4b8209ddd058e1a68a88b2142df1bd1
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
9a07bd1137
|
gnu: r-singler: Add missing inputs.
* gnu/packages/bioconductor.scm (r-singler)[native-inputs]: Add
r-scuttle and r-singlecellexperiment.
Change-Id: I1629f5b206a0fbc8035b1d2a31315570933b9375
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
38462deac0
|
gnu: r-spatialexperiment: Add missing inputs.
* gnu/packages/bioconductor.scm (r-spatialexperiment)[native-inputs]: Add
r-dropletutils.
[arguments]: Add phase 'set-HOME.
Change-Id: Ie08e76e22d6bf0410da2f590ac5f388f316e9111
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
3ec6dd568c
|
gnu: r-asset: Add missing input.
* gnu/packages/bioconductor.scm (r-asset)[native-inputs]: Add r-biocgenerics.
Change-Id: Iecfe6093665033d41b43d0ead6fa9d3f3fd54d81
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
7deb8c97a9
|
gnu: r-savr: Disable vignettes.
* gnu/packages/bioconductor.scm (r-savr)[native-inputs]: Add r-testthat.
[arguments]: Disable vignettes.
Change-Id: If5a5928d3f7fde5d3360184b229894d92b715d03
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
7aa901c394
|
gnu: r-regioner: Add missing input.
* gnu/packages/bioconductor.scm (r-regioner)[native-inputs]: Add
r-biocmanager.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I452297d9b7c776624e54bec376ed14efe4521d55
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
71c935e456
|
gnu: r-biotmle: Disable tests.
* gnu/packages/bioconductor.scm (r-biotmle)[native-inputs]: Add r-biotmledata.
[arguments]: Disable tests.
Change-Id: Ia854a6278055a2617db62cbe360b8e108e5584c7
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
7c30bdafcf
|
gnu: Add r-biotmledata.
* gnu/packages/bioconductor.scm (r-biotmledata): New variable.
Change-Id: If0793889ddf09b31333c8331cc5ad87f72c16ac2
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
eb688fe356
|
gnu: r-qdnaseq: Add missing input.
* gnu/packages/bioconductor.scm (r-qdnaseq)[native-inputs]: Add r-biocstyle.
Change-Id: I6a22fb4208122c5f1a6c50421129722e5b98e11d
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
d172bb40d2
|
gnu: r-motifmatchr: Add missing inputs.
* gnu/packages/bioconductor.scm (r-motifmatchr)[native-inputs]: Add
r-bsgenome-hsapiens-ucsc-hg19.
Change-Id: I90b4c258c9685047287e1e5eedbdbe9b9ce26f8f
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
9a1917a1cb
|
gnu: r-glmgampoi: Add missing inputs.
* gnu/packages/bioconductor.scm (r-glmgampoi)[native-inputs]: Add
r-biocparallel, r-limma, r-mass, r-scran, and r-zoo.
Change-Id: I5019e1b6efdad8c98245bef7512265b2141f78c9
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
01ce0a7fac
|
gnu: r-activedriverwgs: Add missing input.
* gnu/packages/bioconductor.scm (r-activedriverwgs)[native-inputs]: Add
r-testthat.
Change-Id: Ieb45284d6a240bc88081da0018a7163a66e78b22
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
4682cb8dc2
|
gnu: r-sictools: Disable tests.
* gnu/packages/bioconductor.scm (r-sictools)[arguments]: Disable tests.
Change-Id: Id692ec7c7d5dcb17628fe818b7d116e9261ad60f
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
2d66334e5e
|
gnu: r-bamsignals: Add missing inputs.
* gnu/packages/bioconductor.scm (r-bamsignals)[native-inputs]: Add
r-rsamtools.
Change-Id: Ifdca0e50c90349ba4179f80ea1fed91cd9ba37db
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
9116b849a4
|
gnu: r-biocthis: Disable tests.
* gnu/packages/bioconductor.scm (r-biocthis)[arguments]: Disable tests.
Change-Id: Icd1a846013a36c3c8555bdcb2d6ba7dce6a8e09c
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
05741b0fbe
|
gnu: r-spectra: Disable tests.
* gnu/packages/bioconductor.scm (r-spectra)[arguments]: Disable tests.
[native-inputs]: Add missing inputs r-mzr and r-patrick.
Change-Id: I7d9dca3c1f17c0a57d7b6cc7479e08ea5bb11843
|
2024-12-03 16:59:44 +01:00 |
|
Ricardo Wurmus
|
9b9bc99439
|
gnu: r-powertcr: Add missing input.
* gnu/packages/bioconductor.scm (r-powertcr)[native-inputs]: Add
r-biocgenerics.
Change-Id: Ieb0f7f2bd4362a9f1d6c4a0b9b937e8be81b7323
|
2024-12-03 16:59:44 +01:00 |
|
Ricardo Wurmus
|
8f0455f153
|
gnu: r-mzr: Add missing inputs.
* gnu/packages/bioconductor.scm (r-mzr)[native-inputs]: Add r-codetools,
r-msdata, r-mzid, and r-xml.
Change-Id: Iaeb8286a19ddb1bc750710a0e5d5a5cee59b3901
|
2024-12-03 16:59:44 +01:00 |
|
Ricardo Wurmus
|
226eb57b34
|
gnu: r-sanssouci: Add missing inputs.
* gnu/packages/bioconductor.scm (r-sanssouci)[native-inputs]: Add r-ggplot2
and r-testthat.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I902b4e4a2163f5ed9cf07d186dfe80068a8ef4a5
|
2024-12-03 16:59:44 +01:00 |
|
Ricardo Wurmus
|
c2b57f66da
|
gnu: r-birewire: Add missing input.
* gnu/packages/bioconductor.scm (r-birewire)[native-inputs]: Add
r-biocgenerics.
Change-Id: I3d07db1bd5cafd88f05afe67fc7bf43e07946365
|
2024-12-03 16:59:44 +01:00 |
|
Ricardo Wurmus
|
a8e5c1b581
|
gnu: r-variancepartition: Add missing inputs.
* gnu/packages/bioconductor.scm (r-variancepartition)[native-inputs]: Add
r-edger and r-rfast.
Change-Id: I5b9bd4e378d0e7dbd5bc3efc67b96bd1beb563b1
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
5ad404c683
|
gnu: r-annotationhub: Disable tests.
* gnu/packages/bioconductor.scm (r-annotationhub)[arguments]: Disable tests.
Change-Id: I00a9778eb5d8cd031b956c583f12f42921fec4e2
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
c2aab92f42
|
gnu: r-treeio: Add missing inputs.
* gnu/packages/bioconductor.scm (r-treeio)[native-inputs]: Add r-igraph and
r-xml2.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I0c5e8ef566acbc8593c6c27a6cc7776778937876
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
1f0808a5c1
|
gnu: r-gofuncr: Add missing inputs.
* gnu/packages/bioconductor.scm (r-gofuncr)[native-inputs]: Add r-homo-sapiens.
Change-Id: I66d6e9985fc420c93eaf77afa348b7bbd29381c7
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
61cd388435
|
gnu: r-organismdbi: Disable tests.
* gnu/packages/bioconductor.scm (r-organismdbi)[arguments]: Disable tests.
Change-Id: I1a669db2ffc8f9e5bf00666bdfbc53a060508dc6
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
199636cd7b
|
gnu: r-txdbmaker: Add test inputs.
* gnu/packages/bioconductor.scm (r-txdbmaker)[native-inputs]: Add r-rmariadb.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I22fe422410a41998e4fa3552cfaa1dba3e245c10
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
0af2fc1f06
|
gnu: r-biomart: Add test inputs.
* gnu/packages/bioconductor.scm (r-biomart)[native-inputs]: Add r-httptest2
and r-mockery.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I07aacb1f73a8afd49a1645da8c1bf2d22dde7873
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
ec8709d5eb
|
gnu: r-metagenomeseq: Add test inputs.
* gnu/packages/bioconductor.scm (r-metagenomeseq)[native-inputs]: Add
r-testthat.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I702d02695fe0b078bd2b97b958a0bbde73d0c2d5
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
b4c9f8368a
|
gnu: r-ioniser: Add missing inputs.
* gnu/packages/bioconductor.scm (r-ioniser)[native-inputs]: Add
r-minionsummarydata.
Change-Id: Ie478db21c33c6d279937678b8103cca5df228a09
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
35550df0e5
|
gnu: Add r-minionsummarydata.
* gnu/packages/bioconductor.scm (r-minionsummarydata): New variable.
Change-Id: I61318a1338bbff117e38d3ce5963dd061e5175a9
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
82ace693ec
|
gnu: r-glimma: Add missing inputs.
* gnu/packages/bioconductor.scm (r-glimma)[native-inputs]: Add r-pryr.
Change-Id: I9109cc636e758df436aaae38c3b2bd735b1e4cc0
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
5460c2aed8
|
gnu: r-systempiper: Add missing inputs and disable tests.
* gnu/packages/bioconductor.scm (r-systempiper)[native-inputs]: Add
r-systempiperdata.
[arguments]: Disable tests.
Change-Id: Ic071bbcb53ef9fb96385fbbdb5725ed2a4490db7
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
877c366285
|
gnu: r-roar: Add missing inputs.
* gnu/packages/bioconductor.scm (r-roar)[native-inputs]: Add
r-rnaseqdata-hnrnpc-bam-chr14.
Change-Id: Ic5fa181d52e87ba7039e0000f5610eb46150bbfc
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
8c08529608
|
gnu: Add r-systempiperdata.
* gnu/packages/bioconductor.scm (r-systempiperdata): New variable.
Change-Id: I125e8003073ffc5fa7f20d3efa0f3ead71eaafe3
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
7cc00303ec
|
gnu: r-sgseq: Add missing inputs.
* gnu/packages/bioconductor.scm (r-sgseq)[native-inputs]: Add
r-bsgenome-hsapiens-ucsc-hg19.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I5ff9e2af754700e5ba70ad7bdd1be5ec952946a3
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
af70af3529
|
gnu: Add r-rnaseqdata-hnrnpc-bam-chr14.
* gnu/packages/bioconductor.scm (r-rnaseqdata-hnrnpc-bam-chr14): New variable.
Change-Id: If2f9bf10e3e1396cfd31e3278020d623ce2253e0
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
c8612c38a4
|
gnu: r-bioqc: Add missing inputs.
* gnu/packages/bioconductor.scm (r-bioqc)[native-inputs]: Add r-ineq.
Change-Id: I090a0d25f87d23119e66a69ca37c16d7b384a01a
|
2024-12-03 16:59:42 +01:00 |
|