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Author SHA1 Message Date
Ricardo Wurmus
1fa804781d
gnu: r-rcy3: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-rcy3): Update to 2.28.0.
[native-inputs]: Add r-runit.

Change-Id: I7fbf8bb82a46c550e052e22b70ac220ec749ae47
2025-05-12 08:54:35 +02:00
Ricardo Wurmus
7182557046
gnu: r-rcas: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.34.0.
[native-inputs]: Remove r-biocmanager.

Change-Id: I66a554c9c247d51c645b332ac34372f5ebb1fa88
2025-05-12 08:54:35 +02:00
Ricardo Wurmus
feb97cb7df
gnu: r-rbgl: Update to 1.84.0.
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.84.0.
[native-inputs]: Add r-biocgenerics.

Change-Id: Idfdafc142fa0e3fc341118a2eeb0dc239e717499
2025-05-12 08:54:35 +02:00
Ricardo Wurmus
074537fce0
gnu: r-protgenerics: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.40.0.

Change-Id: Ide9e7ececf32c64eaefaffcda3f8f582cd8d46d9
2025-05-12 08:54:35 +02:00
Ricardo Wurmus
d2719f3685
gnu: r-protgear: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-protgear): Update to 1.12.0.

Change-Id: I9259fec62c8e0456aa45eb51e4957d39b2a0085f
2025-05-12 08:54:35 +02:00
Ricardo Wurmus
fcdf1d041b
gnu: r-powertcr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-powertcr): Update to 1.28.0.

Change-Id: Idb3b72539bc6dab7d333a7c73ba1d7aff4ad84e4
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
426466e988
gnu: r-piano: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-piano): Update to 2.24.0.
[native-inputs]: Add r-biomart.

Change-Id: Ifedc7f9af862306d717e0c0f0e6c0fdd13fd1110
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
404243f3be
gnu: r-pfamanalyzer: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-pfamanalyzer): Update to 1.8.0.

Change-Id: I04f9e3fec5c9f48594eb622466c0efffec2b6399
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
65108c58b9
gnu: r-pcamethods: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 2.0.0.

Change-Id: I87726ec31fc6ce2ed11013505f0f113c1ea22e23
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
f541765d30
gnu: r-pcaexplorer: Update to 3.2.0.
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 3.2.0.

Change-Id: I94c9fc78cc21754f57b89d3c79a85f70d34935b1
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
68f24ab232
gnu: r-oscope: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-oscope): Update to 1.38.0.

Change-Id: Ie63bd19aa4f96c6a75f9a523c9f6456953d84bbb
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
0fb72a2f09
gnu: r-organism-dplyr: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.36.0.

Change-Id: I8c9511b341a095cc22510ce932e5808b89383e26
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
e7a8b91be8
gnu: r-mzr: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.42.0.
[native-inputs]: Remove r-codetools.

Change-Id: I7f0322706c0f78add16e1961b75f84cf5d47fcfc
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
1224783dda
gnu: r-mzid: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.46.0.

Change-Id: I6780216b71c64cbb24d70ffd73794ae8e4afd842
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
2ce7a6ded9
gnu: r-msnid: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.42.0.
[native-inputs]: Remove r-runit; add r-digest.

Change-Id: I8a6f5a7ca0a67251aca31c748658a0d50de03dc8
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
ea35ce9f49
gnu: r-msexperiment: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-msexperiment): Update to 1.10.0.
[native-inputs]: Remove r-s4vectors, r-spectra, and r-summarizedexperiment.

Change-Id: Ie0a1fef71dae8b9dbf84e3d9bb7b7bbfb9717b11
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
1f89b59863
gnu: r-msa: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-msa): Update to 1.40.0.
[native-inputs]: Add r-ape, r-pwalign, and r-seqinr.

Change-Id: I7c0e4cdba4b4588bb553ba5c588f6122bd7302be
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
74f507b1ae
gnu: r-muscat: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.22.0.

Change-Id: I56e0e54ef73abb3f56c2f87692c3a16d27db75ad
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
247002f43a
gnu: r-mosdef: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-mosdef): Update to 1.4.0.

Change-Id: Ibda20c28ef561050c07bd5a0eb381736603aac7d
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
f287baeaff
gnu: r-modstrings: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-modstrings): Update to 1.24.0.

Change-Id: Id13e794acf3dabfd60495b36de498daeda03808e
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
50c7c7f413
gnu: r-mmuphin: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.22.0.

Change-Id: I827e3434a8e52c3ceef6f2efe1acb958f04bdf4c
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
151a17ef69
gnu: r-mfuzz: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-mfuzz): Update to 2.68.0.

Change-Id: Ic8243e125f76d552bd198b6958bc82cc8d5a4bb5
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
858698e1f6
gnu: r-methylaid: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-methylaid): Update to 1.42.0.

Change-Id: Id3fc8d9aca3c002da5f6d0ed82f432799e118fa6
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
1a6ca53fc8
gnu: r-metaneighbor: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-metaneighbor): Update to 1.28.0.

Change-Id: Ic7398a996cc64f1d6e504a6cdb600229e310f313
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
136875cc25
gnu: r-metagenomeseq: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-metagenomeseq): Update to 1.50.0.

Change-Id: If7d3a5c53bfb6984fa74798dc42d3df497c32c59
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
11426b7e1e
gnu: r-mdqc: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-mdqc): Update to 1.70.0.

Change-Id: I5b6c44ddd74e0967c97cff65cf1a6a9e3f338e44
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
fc5c3998f5
gnu: r-maser: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-maser): Update to 1.26.0.
[native-inputs]: Remove r-testthat.

Change-Id: Ib65dc06db509a7861a2a8d0f160bd364b142a0bc
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
4f99c28463
gnu: r-manor: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-manor): Update to 1.80.0.

Change-Id: I0c3058376db77bf73879766bcbb6a2c59f5385bf
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
bb8d149a7b
gnu: r-makecdfenv: Update to 1.84.0.
* gnu/packages/bioconductor.scm (r-makecdfenv): Update to 1.84.0.
[propagated-inputs]: Remove r-zlibbioc.

Change-Id: I7cd18e09ab8a893f901e431c94fec1a8c3d961e3
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
b92d4efce7
gnu: r-made4: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-made4): Update to 1.82.0.

Change-Id: I952736d83c10612977e33089bf77240630a8a3a8
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
75d6489661
gnu: r-maaslin2: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.22.0.

Change-Id: I34db84198ff794b43eebfc9d64b71de7d6c4f033
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
5420b4181a
gnu: r-limma: Update to 3.64.0.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.64.0.

Change-Id: Id6424a850cc96543cec37f6da902fe60a15c922d
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
112712f262
gnu: r-lea: Update to 3.20.0.
* gnu/packages/bioconductor.scm (r-lea): Update to 3.20.0.

Change-Id: Ia54ac8273a3784af97a10d2ba010b8b80c1df506
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
a27f5d20c4
gnu: r-keggrest: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.48.0.
[native-inputs]: Add r-biocgenerics and r-runit.

Change-Id: I52078a3bbbff6f7d0898de5dc395e99182e22e30
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
8b497661d3
gnu: r-interactivedisplaybase: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.46.0.

Change-Id: Ic011f64cd3383cc14e014b6d49a70c7f588bb410
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
ca48f1fdc5
gnu: r-impute: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-impute): Update to 1.82.0.

Change-Id: Ic8c461b27efcb8881886daa0fc4fc23f1464c5e3
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
76e839682f
gnu: r-rpx: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-rpx): Update to 2.16.0.

Change-Id: Ib37437efc30f0c44deeaae043bfcbe165dbe3373
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
7938222e6e
gnu: r-rnbeads: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-rnbeads): Update to 2.26.0.

Change-Id: Ib7f1932e42590bfe58b3b876d3673563168ebd0e
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
48ef937acc
gnu: r-rhtslib: Update to 3.4.0.
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 3.4.0.

Change-Id: I02a5619bf6981f2d4e579700f0d9e06c91fcf206
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
455f34b837
gnu: r-rdisop: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-rdisop): Update to 1.68.0.

Change-Id: Ia8423eea89f7d3e9473bf20905c1aab6ccc6c59e
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
9a618dd6a6
gnu: r-raggedexperiment: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-raggedexperiment): Update to 1.32.0.

Change-Id: I6dc3c2e8136828dc88ce4207dfcf9b1076bc17d8
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
5f758fce96
gnu: r-radiogx: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-radiogx): Update to 2.12.0.

Change-Id: I504d9c672785cb263f26fa12d340fcbb04936a2e
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
3d5454f578
gnu: r-r4rna: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-r4rna): Update to 1.36.0.

Change-Id: Ica94f5e4c6a88312631f050f8d0b2d82021f2df5
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
0c2dd8443d
gnu: r-r3cseq: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-r3cseq): Update to 1.54.0.

Change-Id: I9882221f384354fc25d948e88954af47c39fb2a5
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
973de480da
gnu: r-hpar: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.50.0.

Change-Id: I694a8fba24af5b136a3bad8dc688b69b1b012654
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
3cd007420d
gnu: r-harshlight: Update to 1.79.0.
* gnu/packages/bioconductor.scm (r-harshlight): Update to 1.79.0.

Change-Id: If3b51b8621644c5218506b45df8aa852f727cbcb
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
6bd47f0047
gnu: r-gypsum: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-gypsum): Update to 1.4.0.
[native-inputs]: Add r-dbi, r-digest, and r-rsqlite.

Change-Id: I9c47d813f75c0e3ea9f4f39ed295a1b603fc44ff
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
a4b146f1c7
gnu: r-gsva: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-gsva): Update to 2.2.0.

Change-Id: Ieab3231bded2bdc5ed7b0049deb85d8596f7eec7
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
fbc9a60461
gnu: r-gostats: Update to 2.74.0.
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.74.0.

Change-Id: Ib3fe20301d325ef58991b1af420e377d49ac5f40
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
5d7d0bcc65
gnu: r-globaltest: Update to 5.62.0.
* gnu/packages/bioconductor.scm (r-globaltest): Update to 5.62.0.

Change-Id: I9299108c1105893d7d9c535bf0e5a10f5e7321ab
2025-05-12 08:54:30 +02:00