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Author SHA1 Message Date
Ricardo Wurmus
5fa168af7d
gnu: r-h5mread: Update to 1.0.1.
* gnu/packages/bioconductor.scm (r-h5mread): Update to 1.0.1.

Change-Id: I311083e4c7fefe82fee93bf7305feeb922e434f5
2025-05-31 23:46:23 +02:00
Ricardo Wurmus
a4150a1749
gnu: r-bioccheck: Update to 1.44.2.
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.44.2.

Change-Id: Iafd29878627a4f41a1458c8417de0035bf380c5a
2025-05-31 23:46:23 +02:00
Ricardo Wurmus
2ba59b2b6e
gnu: r-systempiper: Update to 2.14.1.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.14.1.

Change-Id: I91c9f49510b44f708f722e51d914031e9057db5a
2025-05-31 23:46:22 +02:00
Ricardo Wurmus
e6be0c57b7
gnu: r-spectra: Update to 1.18.2.
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.18.2.

Change-Id: Ia7a793a867bfe8abdddec33c8c880d8829070ea7
2025-05-31 23:46:22 +02:00
Ricardo Wurmus
525224c2b9
gnu: r-limma: Update to 3.64.1.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.64.1.

Change-Id: I0b3fc6f0c5ca32465e5a7eabcf90aaed60c94189
2025-05-31 23:46:22 +02:00
Ricardo Wurmus
6a9b7e26f5
gnu: r-genomicdatacommons: Update to 1.32.1.
* gnu/packages/bioconductor.scm (r-genomicdatacommons): Update to 1.32.1.

Change-Id: I4bc55fa75825426ecb884109cf29791fd2747aac
2025-05-31 23:46:22 +02:00
Ricardo Wurmus
63dd62715d
gnu: r-anvil: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.20.1.

Change-Id: Ica835b921d4e4e157914516acce88b356a211cf4
2025-05-31 23:46:22 +02:00
Ricardo Wurmus
11c7ff6172
gnu: r-ancombc: Update to 2.10.1.
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.10.1.

Change-Id: Ie15e53edc7ef4595d0230bee6db9ea097c0cf637
2025-05-31 23:46:22 +02:00
Ricardo Wurmus
6f62d7d5bc
gnu: r-systempiperdata: Update to 2.12.2.
* gnu/packages/bioconductor.scm (r-systempiperdata): Update to 2.12.2.

Change-Id: Iad841ef06fa935c9050c2610e2820f6ac70c87ac
2025-05-31 23:46:22 +02:00
Ricardo Wurmus
646fef769d
gnu: r-tximeta: Update to 1.26.1.
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.26.1.

Change-Id: I19ae8a59fd8f58facc9302a15348d9649607fb88
2025-05-21 15:21:24 +02:00
Ricardo Wurmus
eb9877c6aa
gnu: r-biocpkgtools: Update to 1.26.2.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.26.2.

Change-Id: I4efe3710c67f69d8a3b611d20d4e7a7f1b1d0788
2025-05-21 15:21:24 +02:00
Ricardo Wurmus
8e03e9b424
gnu: r-scrapper: Update to 1.2.1.
* gnu/packages/bioconductor.scm (r-scrapper): Update to 1.2.1.

Change-Id: I94f117b6544bac4ac65cd8107841f838efb7c7e3
2025-05-21 15:21:24 +02:00
Ricardo Wurmus
7fe4561c8e
gnu: r-msnbase: Update to 2.34.1.
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.34.1.

Change-Id: I18d4762867bfc287601e56789215bb91b5bf0d5f
2025-05-21 15:21:24 +02:00
Ricardo Wurmus
d504ec95ef
gnu: r-metabocoreutils: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-metabocoreutils): Update to 1.16.1.

Change-Id: I8508fa80073cb950cdecd6b2394cb74740c004e0
2025-05-21 15:21:24 +02:00
Ricardo Wurmus
d307bd16c3
gnu: r-biocmake: Update to 1.0.1.
* gnu/packages/bioconductor.scm (r-biocmake): Update to 1.0.1.

Change-Id: I7144aec43cb3749f659d4ff8325e947193038d62
2025-05-21 15:21:24 +02:00
Ricardo Wurmus
2a161a1ab7
gnu: r-faahko: Update to 1.48.1.
* gnu/packages/bioconductor.scm (r-faahko): Update to 1.48.1.

Change-Id: I2b62bbb03c23efb20dd45d65312c335e602da88a
2025-05-15 10:28:02 +02:00
Ricardo Wurmus
50d5585884
gnu: r-dittoseq: Add missing test inputs.
* gnu/packages/bioconductor.scm (r-dittoseq)[properties]: Record
updater-extra-native-inputs.
[native-inputs]: Add r-complexheatmap, r-ggplot-multistats, and r-ggrastr.

Change-Id: I47194da4dde18f96d4afa53cf4404d9cb1115a2e
2025-05-14 13:54:32 +02:00
Ricardo Wurmus
6ecfb09fb7
gnu: r-bsseq: Update to 1.44.1.
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.44.1.

Change-Id: I860ab39c7e188a381d2519c4399f7747e867c474
2025-05-13 14:50:16 +02:00
Ricardo Wurmus
5d2845186d
gnu: r-biotmle: Update to 1.32.1.
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.32.1.

Change-Id: I21be4c7ca5dbff137bce7a143c22eb9b8f417fe8
2025-05-13 14:50:16 +02:00
Ricardo Wurmus
301621fa0b
gnu: r-erma: Update to 1.24.1.
* gnu/packages/bioconductor.scm (r-erma): Update to 1.24.1.

Change-Id: I25e19882b92ec6008817e89e8e0aaaa4efe15764
2025-05-13 14:50:16 +02:00
Ricardo Wurmus
857e115455
gnu: r-spatialexperiment: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-spatialexperiment): Update to 1.18.1.

Change-Id: Ieca3d4685fd7ff56e027793813cd3fe4e034c91b
2025-05-13 14:50:16 +02:00
Ricardo Wurmus
cc0c561b40
gnu: r-singlecellexperiment: Update to 1.30.1.
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.30.1.

Change-Id: I0238fc7c9e7b798821e29570cf9d78261f2306f4
2025-05-13 14:50:16 +02:00
Ricardo Wurmus
d55ee8edd0
gnu: r-chromvar: Update to 1.30.1.
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.30.1.

Change-Id: Id9344c4f85834a8b050ff3c30c7a1128d3f36a61
2025-05-13 14:50:16 +02:00
Ricardo Wurmus
ecbebc5ca9
gnu: r-circrnaprofiler: Update to 1.22.1.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.22.1.

Change-Id: I443629810f3ce69d1f5e80e72a6022a98bd8a002
2025-05-13 14:50:15 +02:00
Ricardo Wurmus
1a2a984e4f
gnu: r-rcistarget: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.28.1.

Change-Id: I1083e6d34e049079d0269b61882978fdee6db604
2025-05-13 14:50:15 +02:00
Ricardo Wurmus
11ecd7aa64
gnu: r-sgseq: Update to 1.42.1.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.42.1.

Change-Id: I4b7d49f17579e8bb11fd35412e63b435be6f15b6
2025-05-13 14:50:15 +02:00
Ricardo Wurmus
ac13c578f0
gnu: r-roar: Update to 1.44.1.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.44.1.

Change-Id: Ib66646c2eb6e3cb0f0906812a04ef08b666d52cb
2025-05-13 14:50:15 +02:00
Ricardo Wurmus
7a0ed52e51
gnu: r-yamss: Update to 1.34.1.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.34.1.

Change-Id: Ia41fad0a328e1ec1a761847fa79a9c16962cc400
2025-05-13 14:50:15 +02:00
Ricardo Wurmus
0acf9956fc
gnu: r-aucell: Update to 1.30.1.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.30.1.

Change-Id: I28263f9fc21ac8272f6a8ba61aa641cfb35302c4
2025-05-13 14:50:15 +02:00
Ricardo Wurmus
c73edded1a
gnu: r-allelicimbalance: Update to 1.46.1.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.46.1.

Change-Id: I4af917145424e03ca90831ba71e8f304b5dd49bb
2025-05-13 14:50:15 +02:00
Ricardo Wurmus
c6a9b298bd
gnu: r-mlinterfaces: Update to 1.88.1.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.88.1.

Change-Id: I2a8f4a08b53fed8ee8f086c66b5ee58df4b22cf6
2025-05-13 14:50:14 +02:00
Ricardo Wurmus
b2af3e05a0
gnu: r-clusterexperiment: Update to 2.28.1.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.28.1.

Change-Id: Ic789105fd575a93da69d68eadf9091583018fd2c
2025-05-13 14:50:14 +02:00
Ricardo Wurmus
bf22c1df8a
gnu: r-enrichplot: Update to 1.28.2.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.28.2.

Change-Id: Ib9712ce68e48f747fdd4b5b9a3ee4b4513af0604
2025-05-13 14:50:14 +02:00
Ricardo Wurmus
95b930fc91
gnu: r-minfi: Update to 1.54.1.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.54.1.

Change-Id: I997568d0f2cb70a42c72a98b60b74f34a0a97694
2025-05-13 14:50:14 +02:00
Ricardo Wurmus
21d2e4a632
gnu: r-milor: Update to 2.4.1.
* gnu/packages/bioconductor.scm (r-milor): Update to 2.4.1.

Change-Id: Ie58731e8bf176fde4e5e70e38504dc5b7ef57a45
2025-05-13 14:50:14 +02:00
Ricardo Wurmus
38ba7b801f
gnu: r-scone: Update to 1.32.1.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.32.1.

Change-Id: I4087316689bb32f7b892b291122ae7a89ff9ace4
2025-05-13 14:50:14 +02:00
Ricardo Wurmus
5984b9ddbb
gnu: r-treesummarizedexperiment: Update to 2.16.1.
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.16.1.

Change-Id: I43666115877afe54857a9e93255e725eaaeb9237
2025-05-13 14:50:14 +02:00
Ricardo Wurmus
fe8e769103
gnu: r-interactionset: Update to 1.36.1.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.36.1.

Change-Id: Ie5687ce5dc1de1d029f156950debbb0e520db17e
2025-05-13 14:50:13 +02:00
Ricardo Wurmus
3e759802a9
gnu: r-variantannotation: Update to 1.54.1.
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.54.1.

Change-Id: I3607250b3db5e6fc99e95f8af79cce1bc24369d2
2025-05-13 14:50:13 +02:00
Ricardo Wurmus
84ae5ddbaf
gnu: r-txdbmaker: Update to 1.4.1.
* gnu/packages/bioconductor.scm (r-txdbmaker): Update to 1.4.1.

Change-Id: Ia641479de6729e5cda6d8c971b61525e6c3773b6
2025-05-13 14:50:13 +02:00
Ricardo Wurmus
5895ecb5e3
gnu: r-summarizedexperiment: Update to 1.38.1.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.38.1.

Change-Id: If0b1b287f7fa59b5dd59cfbc1e522d0abe325003
2025-05-13 14:50:13 +02:00
Ricardo Wurmus
bd554c63b8
gnu: r-stager: Update to 1.30.1.
* gnu/packages/bioconductor.scm (r-stager): Update to 1.30.1.

Change-Id: Iaac5a037e08055c9d6b134fee8823ccdd93587a8
2025-05-13 14:50:13 +02:00
Ricardo Wurmus
717d395a29
gnu: r-trajectoryutils: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.16.1.

Change-Id: I81f2ccc2ce1dbccb724cacd8ac2bab7747fd1d36
2025-05-13 14:50:13 +02:00
Ricardo Wurmus
fafd4707b6
gnu: r-mosdef: Update to 1.4.1.
* gnu/packages/bioconductor.scm (r-mosdef): Update to 1.4.1.

Change-Id: I36c395936aa2741d56762f8d4b44c1fac83adcf9
2025-05-13 14:50:13 +02:00
Ricardo Wurmus
dcf2c2a414
gnu: r-raggedexperiment: Update to 1.32.2.
* gnu/packages/bioconductor.scm (r-raggedexperiment): Update to 1.32.2.

Change-Id: Ic0ef5b5d879cf418ab0929a7322d557d42452ff0
2025-05-13 14:50:13 +02:00
Ricardo Wurmus
30aa9b1a65
gnu: r-genomicfiles: Update to 1.44.1.
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.44.1.

Change-Id: I096e8440de2d2b6b5265cca130530d8f821d4e5c
2025-05-13 14:50:12 +02:00
Ricardo Wurmus
7848e8baae
gnu: r-genomation: Update to 1.40.1.
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.40.1.

Change-Id: I29f812992afd0832b0a262ad5d8e3aa6d475c3f2
2025-05-13 14:50:12 +02:00
Ricardo Wurmus
6dd49589c5
gnu: r-enmix: Update to 1.44.1.
* gnu/packages/bioconductor.scm (r-enmix): Update to 1.44.1.

Change-Id: If69c903e02b3108ef17189bcd0aac3752fa0a7f8
2025-05-13 14:50:12 +02:00
Ricardo Wurmus
49e3d56a87
gnu: r-edger: Update to 4.6.2.
* gnu/packages/bioconductor.scm (r-edger): Update to 4.6.2.

Change-Id: Ifa116d651fa04cf300de48cd931a2661df609542
2025-05-13 14:50:12 +02:00
Ricardo Wurmus
5b27dbb67e
gnu: r-dexseq: Update to 1.54.1.
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.54.1.

Change-Id: I52f24353dbf1ee9160f17cc0c510a8a172b73905
2025-05-13 14:50:12 +02:00