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Author SHA1 Message Date
Ricardo Wurmus
90d3a46d8e
gnu: r-mixomics: Update to 6.32.0.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.32.0.
[native-inputs]: Add r-vdiffr.

Change-Id: I996462738deed65f60f9be24fa30bc2339e8a18c
2025-05-12 08:54:55 +02:00
Ricardo Wurmus
5cd2f74642
gnu: r-flowsom: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.16.0.
[native-inputs]: Remove r-testthat.

Change-Id: I28b36aec8dd35844a7dc3004a05cb91905a85ce7
2025-05-12 08:54:55 +02:00
Ricardo Wurmus
d13721fae6
gnu: r-cytoml: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.20.0.
[inputs]: Add zlib.

Change-Id: I8b2bd6c1881e6bfc0c724b1dcaf6d8614f3c30f7
2025-05-12 08:54:55 +02:00
Ricardo Wurmus
f0381c7f9b
gnu: r-flowstats: Update to 4.20.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.20.0.

Change-Id: Ia5d0d1e70b77b9e192bfbbebc5d153500c169288
2025-05-12 08:54:55 +02:00
Ricardo Wurmus
3565c1956e
gnu: r-rprotobuflib: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.20.0.

Change-Id: Ia4489b20d351bbb94d50423bf47b286a8bac8762
2025-05-12 08:54:55 +02:00
Ricardo Wurmus
236bd2b6a8
gnu: r-flowclust: Update to 3.46.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.46.0.
[native-inputs]: Add r-devtools and r-ellipse.

Change-Id: I8504dfcc28ac621ed4937d841d44f37855836ad2
2025-05-12 08:54:54 +02:00
Ricardo Wurmus
4eb20674ff
gnu: r-flowviz: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.72.0.

Change-Id: I89485dc0cea68482088e7777316807087adf486a
2025-05-12 08:54:54 +02:00
Ricardo Wurmus
74bd891306
gnu: r-ggcyto: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.36.0.

Change-Id: Id210f9ba0134e1fcad89e93125bd26e3a86aa8c0
2025-05-12 08:54:54 +02:00
Ricardo Wurmus
72e55fcd9e
gnu: r-ncdfflow: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.54.0.

Change-Id: I207867cd494f5664433ff363271e1634ebc7dd17
2025-05-12 08:54:54 +02:00
Ricardo Wurmus
dc52c433bc
gnu: r-flowmeans: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.68.0.

Change-Id: I6ded2318cb513b27b437209d70a2f898103f2e7c
2025-05-12 08:54:54 +02:00
Ricardo Wurmus
452eff5941
gnu: r-cytolib: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.20.0.

Change-Id: I102da5ca83550b6977d4aa5b0f12ac71864bba37
2025-05-12 08:54:54 +02:00
Ricardo Wurmus
74387cf496
gnu: r-consensusclusterplus: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.72.0.

Change-Id: Ib9197e307ccf76aaefcd0f53a1cb68c4b5747227
2025-05-12 08:54:54 +02:00
Ricardo Wurmus
840e9d74e1
gnu: r-flowai: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-flowai): Update to 1.38.0.
[native-inputs]: Remove r-testthat.

Change-Id: I0af77c861d887166c6c3e67ce8e874f28fda9174
2025-05-12 08:54:54 +02:00
Ricardo Wurmus
fed5f06902
gnu: r-flames: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-flames): Update to 2.2.0.
[propagated-inputs]: Add r-abind, r-magick, and r-sparsearray.

Change-Id: I5cb9e8661b384618f2ab2ba5076f0c2ee54c808c
2025-05-12 08:54:54 +02:00
Ricardo Wurmus
4fe801a7ca
gnu: r-rsubread: Update to 2.22.1.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.22.1.

Change-Id: Ia0bac10821bd6512b5ebc2619596dc06e85d7f76
2025-05-12 08:54:53 +02:00
Ricardo Wurmus
8e3d77518b
gnu: r-annotatr: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.34.0.

Change-Id: I1d0d5fe49a61431aa171b1bdbea679643704b922
2025-05-12 08:54:53 +02:00
Ricardo Wurmus
84469e8b1e
gnu: r-biosigner: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.36.0.

Change-Id: I1af09f2a27c9c75385a867751a99754a97e57708
2025-05-12 08:54:53 +02:00
Ricardo Wurmus
bf3f74bf14
gnu: r-ropls: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.40.0.

Change-Id: I53e00a6c7c9e26601125aec25fcc4c5c34ac52db
2025-05-12 08:54:53 +02:00
Ricardo Wurmus
87d54dce90
gnu: r-multidataset: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.36.0.
[native-inputs]: Remove r-testthat.

Change-Id: Ie75f6e5d522643d61a6b814dc25b66e250d93de5
2025-05-12 08:54:53 +02:00
Ricardo Wurmus
d059cd9e23
gnu: r-birewire: Update to 3.40.0.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.40.0.

Change-Id: I29078eeecee8361b2720b35394f73f9d4643dc18
2025-05-12 08:54:53 +02:00
Ricardo Wurmus
4d038631d3
gnu: r-rqc: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.42.0.

Change-Id: I6078d2888193e917110ba8df0c656eaeab0fdda7
2025-05-12 08:54:53 +02:00
Ricardo Wurmus
eac76cf929
gnu: r-quasr: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.48.0.

Change-Id: I5d85131156a1ada9a78047518ae6a11c7128767b
2025-05-12 08:54:53 +02:00
Ricardo Wurmus
af90627fda
gnu: r-rhisat2: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.24.0.

Change-Id: I6f8f625f5d5cf093a31a6c68f65b52d7ed7e98cc
2025-05-12 08:54:53 +02:00
Ricardo Wurmus
726f665949
gnu: r-sgseq: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.42.0.
[native-inputs]: Remove r-runit.

Change-Id: Ibd4ff90f6cab13f6fef1c7ac8020aab3822559a8
2025-05-12 08:54:52 +02:00
Ricardo Wurmus
c0709a05ab
gnu: r-rbowtie: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.48.0.
[inputs]: Remove zlib.

Change-Id: I9e33f7a52c5570cbc528b2f4de6382fb59f59407
2025-05-12 08:54:52 +02:00
Ricardo Wurmus
d27e6f8fe0
gnu: r-iclusterplus: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.44.0.

Change-Id: If4e463bbee9e9020edb1dcb7411890927b1803f1
2025-05-12 08:54:52 +02:00
Ricardo Wurmus
98b7d485d0
gnu: r-biocfilecache: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.16.0.
[native-inputs]: Add r-testthat.

Change-Id: I978abff6af97dca4909498555550979ef0871af4
2025-05-12 08:54:52 +02:00
Ricardo Wurmus
9588f9e074
gnu: r-arrmnormalization: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.48.0.

Change-Id: Ie3d9e329b8c4624ae298105fcecbc6c7b3722719
2025-05-12 08:54:52 +02:00
Ricardo Wurmus
25959253d5
gnu: r-progeny: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.30.0.

Change-Id: I184723aa1d9166319f02a0d6ff914db48a74b723
2025-05-12 08:54:52 +02:00
Ricardo Wurmus
7cc52c5d8f
gnu: r-rbowtie2: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.14.0.

Change-Id: I0c41c8ed4d38e250888c2d519bc90704c8be931d
2025-05-12 08:54:52 +02:00
Ricardo Wurmus
d399ec174c
gnu: r-zfpkm: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.30.0.

Change-Id: I2b42cfb684bd2ce84298b2daf2cd216b0ad9f553
2025-05-12 08:54:52 +02:00
Ricardo Wurmus
92c372dd36
gnu: r-zinbwave: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.30.0.

Change-Id: I7c735f1e1f97be782a8e390df0004879bd8413dc
2025-05-12 08:54:52 +02:00
Ricardo Wurmus
b5ce7ac7bc
gnu: r-webbioc: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.80.0.

Change-Id: I7137404c57be1a3d9edf48b0274efbb53a38fb49
2025-05-12 08:54:51 +02:00
Ricardo Wurmus
bec1921c76
gnu: r-widgettools: Update to 1.86.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.86.0.

Change-Id: I91c46401d421ce3200a1634c6104041c3625a570
2025-05-12 08:54:51 +02:00
Ricardo Wurmus
f05cc56f22
gnu: r-wiggleplotr: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.32.0.

Change-Id: I0f725e809a6603111997a5e20bd8ac0d40081b00
2025-05-12 08:54:51 +02:00
Ricardo Wurmus
ad9c1bc6b8
gnu: r-wrench: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.26.0.

Change-Id: Ie14b90fc17471b05b74771dd79e9aeb834b10cbe
2025-05-12 08:54:51 +02:00
Ricardo Wurmus
19ddae1274
gnu: r-wppi: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.16.0.
[native-inputs]: Remove r-testthat.

Change-Id: I37f741c68c7b9cc2c7d5a3cc0da16d218f6b9ab4
2025-05-12 08:54:51 +02:00
Ricardo Wurmus
fcc86c990a
gnu: r-xcms: Update to 4.6.0.
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.6.0.

Change-Id: I105ca51fb8dcfb056fb5bd964e49fb548efe57c4
2025-05-12 08:54:51 +02:00
Ricardo Wurmus
bf750fac59
gnu: r-massspecwavelet: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.74.0.

Change-Id: I5dd9a67668072816d7395be871ce9b5122bedc5c
2025-05-12 08:54:51 +02:00
Ricardo Wurmus
e947378b0f
gnu: r-roar: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.44.0.

Change-Id: Id97a2e975dfb2192812b9ced0f8e4d2028e9ddd5
2025-05-12 08:54:51 +02:00
Ricardo Wurmus
501facb8ab
gnu: r-yarn: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.34.0.

Change-Id: Iefdab419552a59395d2df683b7459fee241ab112
2025-05-12 08:54:51 +02:00
Ricardo Wurmus
420e129932
gnu: r-quantro: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.42.0.
[native-inputs]: Add r-biocgenerics.

Change-Id: I3456ec4f28d738fef8fbde7f12d4294904e605ac
2025-05-12 08:54:50 +02:00
Ricardo Wurmus
c1538308dd
gnu: r-gcrma: Update to 2.80.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.80.0.

Change-Id: Ib3fac2d8121bb723bf71e7042b0b94b98e7128fe
2025-05-12 08:54:50 +02:00
Ricardo Wurmus
c3addc7379
gnu: r-yapsa: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.34.0.

Change-Id: I5e32daa34144c72046713aaa99d32495999f9a43
2025-05-12 08:54:50 +02:00
Ricardo Wurmus
9f419b53c7
gnu: r-somaticsignatures: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.44.0.

Change-Id: I800fedede5e18689c391b8d93a0b5dc0abb113ed
2025-05-12 08:54:50 +02:00
Ricardo Wurmus
0925e5594e
gnu: r-gtrellis: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.40.0.

Change-Id: Ib8ab9f76b1887d09688994634818ecb8c2074dfa
2025-05-12 08:54:50 +02:00
Ricardo Wurmus
956e72528b
gnu: r-yamss: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.34.0.

Change-Id: I76efc8d9d48e4fd1cdac61143d38d92ee84904df
2025-05-12 08:54:50 +02:00
Ricardo Wurmus
829a6bf81a
gnu: r-ebimage: Update to 4.50.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.50.0.
[native-inputs]: Add r-digest.

Change-Id: I4926be7910a289f215078ebae12f245304b86d98
2025-05-12 08:54:50 +02:00
Ricardo Wurmus
bd691d53dd
gnu: r-aucell: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.30.0.
[native-inputs]: Add r-biobase.

Change-Id: I13920f2ebfd087b4bed9aead2322d24ef6c21239
2025-05-12 08:54:50 +02:00
Ricardo Wurmus
297b39685c
gnu: r-allelicimbalance: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.46.0.

Change-Id: I62ec0fba22688fd30a5a861ffb87d9db50ef53d4
2025-05-12 08:54:50 +02:00