7938 commits

Author	SHA1	Message	Date
Ricardo Wurmus	6ecfb09fb7	gnu: r-bsseq: Update to 1.44.1. ... * gnu/packages/bioconductor.scm (r-bsseq): Update to 1.44.1. Change-Id: I860ab39c7e188a381d2519c4399f7747e867c474	2025-05-13 14:50:16 +02:00
Ricardo Wurmus	5d2845186d	gnu: r-biotmle: Update to 1.32.1. ... * gnu/packages/bioconductor.scm (r-biotmle): Update to 1.32.1. Change-Id: I21be4c7ca5dbff137bce7a143c22eb9b8f417fe8	2025-05-13 14:50:16 +02:00
Ricardo Wurmus	301621fa0b	gnu: r-erma: Update to 1.24.1. ... * gnu/packages/bioconductor.scm (r-erma): Update to 1.24.1. Change-Id: I25e19882b92ec6008817e89e8e0aaaa4efe15764	2025-05-13 14:50:16 +02:00
Ricardo Wurmus	857e115455	gnu: r-spatialexperiment: Update to 1.18.1. ... * gnu/packages/bioconductor.scm (r-spatialexperiment): Update to 1.18.1. Change-Id: Ieca3d4685fd7ff56e027793813cd3fe4e034c91b	2025-05-13 14:50:16 +02:00
Ricardo Wurmus	cc0c561b40	gnu: r-singlecellexperiment: Update to 1.30.1. ... * gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.30.1. Change-Id: I0238fc7c9e7b798821e29570cf9d78261f2306f4	2025-05-13 14:50:16 +02:00
Ricardo Wurmus	d55ee8edd0	gnu: r-chromvar: Update to 1.30.1. ... * gnu/packages/bioconductor.scm (r-chromvar): Update to 1.30.1. Change-Id: Id9344c4f85834a8b050ff3c30c7a1128d3f36a61	2025-05-13 14:50:16 +02:00
Ricardo Wurmus	ecbebc5ca9	gnu: r-circrnaprofiler: Update to 1.22.1. ... * gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.22.1. Change-Id: I443629810f3ce69d1f5e80e72a6022a98bd8a002	2025-05-13 14:50:15 +02:00
Ricardo Wurmus	1a2a984e4f	gnu: r-rcistarget: Update to 1.28.1. ... * gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.28.1. Change-Id: I1083e6d34e049079d0269b61882978fdee6db604	2025-05-13 14:50:15 +02:00
Ricardo Wurmus	11ecd7aa64	gnu: r-sgseq: Update to 1.42.1. ... * gnu/packages/bioconductor.scm (r-sgseq): Update to 1.42.1. Change-Id: I4b7d49f17579e8bb11fd35412e63b435be6f15b6	2025-05-13 14:50:15 +02:00
Ricardo Wurmus	ac13c578f0	gnu: r-roar: Update to 1.44.1. ... * gnu/packages/bioconductor.scm (r-roar): Update to 1.44.1. Change-Id: Ib66646c2eb6e3cb0f0906812a04ef08b666d52cb	2025-05-13 14:50:15 +02:00
Ricardo Wurmus	7a0ed52e51	gnu: r-yamss: Update to 1.34.1. ... * gnu/packages/bioconductor.scm (r-yamss): Update to 1.34.1. Change-Id: Ia41fad0a328e1ec1a761847fa79a9c16962cc400	2025-05-13 14:50:15 +02:00
Ricardo Wurmus	0acf9956fc	gnu: r-aucell: Update to 1.30.1. ... * gnu/packages/bioconductor.scm (r-aucell): Update to 1.30.1. Change-Id: I28263f9fc21ac8272f6a8ba61aa641cfb35302c4	2025-05-13 14:50:15 +02:00
Ricardo Wurmus	c73edded1a	gnu: r-allelicimbalance: Update to 1.46.1. ... * gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.46.1. Change-Id: I4af917145424e03ca90831ba71e8f304b5dd49bb	2025-05-13 14:50:15 +02:00
Ricardo Wurmus	c6a9b298bd	gnu: r-mlinterfaces: Update to 1.88.1. ... * gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.88.1. Change-Id: I2a8f4a08b53fed8ee8f086c66b5ee58df4b22cf6	2025-05-13 14:50:14 +02:00
Ricardo Wurmus	b2af3e05a0	gnu: r-clusterexperiment: Update to 2.28.1. ... * gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.28.1. Change-Id: Ic789105fd575a93da69d68eadf9091583018fd2c	2025-05-13 14:50:14 +02:00
Ricardo Wurmus	bf22c1df8a	gnu: r-enrichplot: Update to 1.28.2. ... * gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.28.2. Change-Id: Ib9712ce68e48f747fdd4b5b9a3ee4b4513af0604	2025-05-13 14:50:14 +02:00
Ricardo Wurmus	95b930fc91	gnu: r-minfi: Update to 1.54.1. ... * gnu/packages/bioconductor.scm (r-minfi): Update to 1.54.1. Change-Id: I997568d0f2cb70a42c72a98b60b74f34a0a97694	2025-05-13 14:50:14 +02:00
Ricardo Wurmus	21d2e4a632	gnu: r-milor: Update to 2.4.1. ... * gnu/packages/bioconductor.scm (r-milor): Update to 2.4.1. Change-Id: Ie58731e8bf176fde4e5e70e38504dc5b7ef57a45	2025-05-13 14:50:14 +02:00
Ricardo Wurmus	38ba7b801f	gnu: r-scone: Update to 1.32.1. ... * gnu/packages/bioconductor.scm (r-scone): Update to 1.32.1. Change-Id: I4087316689bb32f7b892b291122ae7a89ff9ace4	2025-05-13 14:50:14 +02:00
Ricardo Wurmus	5984b9ddbb	gnu: r-treesummarizedexperiment: Update to 2.16.1. ... * gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.16.1. Change-Id: I43666115877afe54857a9e93255e725eaaeb9237	2025-05-13 14:50:14 +02:00
Ricardo Wurmus	fe8e769103	gnu: r-interactionset: Update to 1.36.1. ... * gnu/packages/bioconductor.scm (r-interactionset): Update to 1.36.1. Change-Id: Ie5687ce5dc1de1d029f156950debbb0e520db17e	2025-05-13 14:50:13 +02:00
Ricardo Wurmus	3e759802a9	gnu: r-variantannotation: Update to 1.54.1. ... * gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.54.1. Change-Id: I3607250b3db5e6fc99e95f8af79cce1bc24369d2	2025-05-13 14:50:13 +02:00
Ricardo Wurmus	84ae5ddbaf	gnu: r-txdbmaker: Update to 1.4.1. ... * gnu/packages/bioconductor.scm (r-txdbmaker): Update to 1.4.1. Change-Id: Ia641479de6729e5cda6d8c971b61525e6c3773b6	2025-05-13 14:50:13 +02:00
Ricardo Wurmus	5895ecb5e3	gnu: r-summarizedexperiment: Update to 1.38.1. ... * gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.38.1. Change-Id: If0b1b287f7fa59b5dd59cfbc1e522d0abe325003	2025-05-13 14:50:13 +02:00
Ricardo Wurmus	bd554c63b8	gnu: r-stager: Update to 1.30.1. ... * gnu/packages/bioconductor.scm (r-stager): Update to 1.30.1. Change-Id: Iaac5a037e08055c9d6b134fee8823ccdd93587a8	2025-05-13 14:50:13 +02:00
Ricardo Wurmus	717d395a29	gnu: r-trajectoryutils: Update to 1.16.1. ... * gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.16.1. Change-Id: I81f2ccc2ce1dbccb724cacd8ac2bab7747fd1d36	2025-05-13 14:50:13 +02:00
Ricardo Wurmus	fafd4707b6	gnu: r-mosdef: Update to 1.4.1. ... * gnu/packages/bioconductor.scm (r-mosdef): Update to 1.4.1. Change-Id: I36c395936aa2741d56762f8d4b44c1fac83adcf9	2025-05-13 14:50:13 +02:00
Ricardo Wurmus	dcf2c2a414	gnu: r-raggedexperiment: Update to 1.32.2. ... * gnu/packages/bioconductor.scm (r-raggedexperiment): Update to 1.32.2. Change-Id: Ic0ef5b5d879cf418ab0929a7322d557d42452ff0	2025-05-13 14:50:13 +02:00
Ricardo Wurmus	30aa9b1a65	gnu: r-genomicfiles: Update to 1.44.1. ... * gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.44.1. Change-Id: I096e8440de2d2b6b5265cca130530d8f821d4e5c	2025-05-13 14:50:12 +02:00
Ricardo Wurmus	7848e8baae	gnu: r-genomation: Update to 1.40.1. ... * gnu/packages/bioconductor.scm (r-genomation): Update to 1.40.1. Change-Id: I29f812992afd0832b0a262ad5d8e3aa6d475c3f2	2025-05-13 14:50:12 +02:00
Ricardo Wurmus	6dd49589c5	gnu: r-enmix: Update to 1.44.1. ... * gnu/packages/bioconductor.scm (r-enmix): Update to 1.44.1. Change-Id: If69c903e02b3108ef17189bcd0aac3752fa0a7f8	2025-05-13 14:50:12 +02:00
Ricardo Wurmus	49e3d56a87	gnu: r-edger: Update to 4.6.2. ... * gnu/packages/bioconductor.scm (r-edger): Update to 4.6.2. Change-Id: Ifa116d651fa04cf300de48cd931a2661df609542	2025-05-13 14:50:12 +02:00
Ricardo Wurmus	5b27dbb67e	gnu: r-dexseq: Update to 1.54.1. ... * gnu/packages/bioconductor.scm (r-dexseq): Update to 1.54.1. Change-Id: I52f24353dbf1ee9160f17cc0c510a8a172b73905	2025-05-13 14:50:12 +02:00
Ricardo Wurmus	b3d544ad7e	gnu: r-deseq2: Update to 1.48.1. ... * gnu/packages/bioconductor.scm (r-deseq2): Update to 1.48.1. Change-Id: Ieb18674dab9b016f37b880a06f772fbbdbadddb7	2025-05-13 14:50:12 +02:00
Ricardo Wurmus	b927cbe70d	gnu: Remove r-snapcgh. ... This package has been removed with the release of Bioconductor 3.19, and it now fails to build. * gnu/packages/bioconductor.scm (r-snapcgh): Remove variable. Change-Id: Id4408ea2d17d07913fea359292eb3e5d7329b13d	2025-05-12 08:55:51 +02:00
Ricardo Wurmus	f54467968d	gnu: r-tradeseq: Add missing input. ... * gnu/packages/bioconductor.scm (r-tradeseq)[native-inputs]: Add r-delayedmatrixstats. [properties]: Record it in updater-extra-native-inputs. Change-Id: Icc877a48320083d2e5c4987643d52d60c9b11f05	2025-05-12 08:55:50 +02:00
Ricardo Wurmus	3f3b2e31a8	gnu: r-screpertoire: Disable one more test. ... * gnu/packages/bioconductor.scm (r-screpertoire)[arguments]: Disable one more test. Change-Id: I9d44fc50137f6e90f69a2e871a375aff192045ae	2025-05-12 08:55:50 +02:00
Ricardo Wurmus	1ae270f125	gnu: r-scdd: Add missing input. ... * gnu/packages/bioconductor.scm (r-scdd)[properties]: Record updater-extra-native-inputs. [native-inputs]: Add r-testthat. Change-Id: Ibd0925b94ae82145055a0b2c5d53f38df202b077	2025-05-12 08:55:50 +02:00
Ricardo Wurmus	9f17727fd5	gnu: r-classdiscovery: Update to 3.4.8. ... * gnu/packages/bioconductor.scm (r-classdiscovery): Update to 3.4.8. Change-Id: I8d5c707ae55161cf93bf14ab3a4f87c40000327d	2025-05-12 08:55:12 +02:00
Ricardo Wurmus	d247e988a8	gnu: r-metap: Update to 1.12. ... * gnu/packages/bioconductor.scm (r-metap): Update to 1.12. Change-Id: Iad76b9dc0261cad250ed087e64c0490deecafd34	2025-05-12 08:55:12 +02:00
Ricardo Wurmus	76ba63a8bd	gnu: r-ggpicrust2: Update to 2.1.2. ... * gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 2.1.2. [propagated-inputs]: Remove r-aldex2, r-circlize, r-deseq2, r-edger, r-ggally, r-lefser, r-limma, r-maaslin2, r-metagenomeseq, r-microbiomestat, and r-summarizedexperiment; add r-ggplotify, r-ggraph, r-magrittr, r-progress, and r-tidygraph. [native-inputs]: Add r-fgsea, r-ggvenndiagram, r-mockery, and r-upsetr. Change-Id: I174ff92587f70e46d2c3520c0ff1bbf38e4b8172	2025-05-12 08:55:12 +02:00
Ricardo Wurmus	94fa3ed421	gnu: r-scgate: Update to 1.7.0. ... * gnu/packages/bioconductor.scm (r-scgate): Update to 1.7.0. Change-Id: I647cbfc4c289ba8a010e52732b6340856fe1d5b3	2025-05-12 08:55:12 +02:00
Ricardo Wurmus	fc5e3b794a	gnu: r-pscbs: Update to 0.68.0. ... * gnu/packages/bioconductor.scm (r-pscbs): Update to 0.68.0. [propagated-inputs]: Remove r-listenv. [native-inputs]: Remove r-r-devices. Change-Id: Ib198ca104b43c77790c258e8c53fcc34f2b521a1	2025-05-12 08:55:12 +02:00
Ricardo Wurmus	1a5c48351e	gnu: r-dsb: Update to 2.0.0. ... * gnu/packages/bioconductor.scm (r-dsb): Update to 2.0.0. [native-inputs]: Add r-spelling. Change-Id: I1fdebc33bb8a57057b5b8a2ab8b4e401e5631c97	2025-05-12 08:55:12 +02:00
Ricardo Wurmus	880c0191a5	gnu: r-dmrcate: Update to 3.4.0. ... * gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.4.0. Change-Id: I60622a7c030ec5005a7decaf6f0e8cd77023b715	2025-05-12 08:55:11 +02:00
Ricardo Wurmus	7597115cc9	gnu: r-sesamedata: Update to 1.26.0. ... * gnu/packages/bioconductor.scm (r-sesamedata): Update to 1.26.0. Change-Id: I3ed54ced025597402321b550808686ad2d9175bd	2025-05-12 08:55:10 +02:00
Ricardo Wurmus	5cae934a8c	gnu: r-rtcga-rnaseq: Update to 20151101.38.0. ... * gnu/packages/bioconductor.scm (r-rtcga-rnaseq): Update to 20151101.38.0. Change-Id: I5152b9bca7c12d968bbdf95a84b8874134f15b11	2025-05-12 08:55:10 +02:00
Ricardo Wurmus	14f8453677	gnu: r-rnbeads-hg19: Update to 1.40.0. ... * gnu/packages/bioconductor.scm (r-rnbeads-hg19): Update to 1.40.0. Change-Id: I37638d96b655cd1c91769d9e6ba332ae09695c39	2025-05-12 08:55:10 +02:00
Ricardo Wurmus	d2ab8c7909	gnu: r-rnaseqdata-hnrnpc-bam-chr14: Update to 0.46.0. ... * gnu/packages/bioconductor.scm (r-rnaseqdata-hnrnpc-bam-chr14): Update to 0.46.0. Change-Id: I6032eec74f1b93c4b44492b03fbcf270999f4cae	2025-05-12 08:55:10 +02:00
Ricardo Wurmus	e9dacafe12	gnu: r-parathyroidse: Update to 1.46.0. ... * gnu/packages/bioconductor.scm (r-parathyroidse): Update to 1.46.0. Change-Id: I3408aa5f9e5d5f0f67520e18b34989621d419497	2025-05-12 08:55:10 +02:00