1
Fork 0
mirror of https://https.git.savannah.gnu.org/git/guix.git/ synced 2025-07-17 04:20:44 +02:00
Commit graph

7938 commits

Author SHA1 Message Date
Ricardo Wurmus
18b285c9fc
gnu: r-derfinderhelper: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.42.0.

Change-Id: Ica6c804b93d00a4f067748ae398772421ed8d571
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
4a1c548b79
gnu: r-derfinder: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-derfinder): Update to 1.42.0.

Change-Id: Ief25d910c8333b084f2076b6149f26b927352d96
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
d8c0b63dbe
gnu: r-densvis: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.18.0.

Change-Id: I3f6a99d9214e7a43ee67d4309a50bca403a0e737
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
a2ac5d2807
gnu: r-delayedarray: Update to 0.34.1.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.34.1.

Change-Id: Icba6fffa06a021f84f4da61f5f84bc17ce95f025
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
e4d542bcdc
gnu: r-degreport: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-degreport): Update to 1.44.0.

Change-Id: Ia19b01aaca93854263230b3d36d5e22c99de38b8
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
1d39fbf69f
gnu: r-deepsnv: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.54.0.
[native-inputs]: Add r-rcolorbrewer and r-txdb-hsapiens-ucsc-hg19-knowngene.

Change-Id: Ibbde7af2155e5cde4da7c324a7b27913df1a01e6
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
35a50ac501
gnu: r-decoupler: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.14.0.

Change-Id: I67554d2a5f7daee52708a861a0a4b6773713d3d1
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
d8b5fb9532
gnu: r-deconvr: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.14.0.

Change-Id: I7c507a100faf1c2c2b5b3d7fc1297d4480fd201c
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
f1e841b872
gnu: r-decontam: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-decontam): Update to 1.28.0.

Change-Id: If6d9ed9e3c40626f80faba063ef2994c0ea4c100
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
8c982032ba
gnu: r-deconrnaseq: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.50.0.

Change-Id: I25d09b0a8214be25a16f93c2e1562e4d50bea298
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
ab53878c6d
gnu: r-decomptumor2sig: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.24.0.

Change-Id: I75e58061b9df3467b545da894d30fdda20665d7a
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
fdcbb44ef2
gnu: r-decipher: Update to 3.4.0.
* gnu/packages/bioconductor.scm (r-decipher): Update to 3.4.0.

Change-Id: I8ee729e8d9cb5f3fe3c3e253b40f966751a66aa9
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
d9f6191872
gnu: r-debcam: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.26.0.

Change-Id: Ie2c5c756a2808e160828a5fdaee2e6698dbbbb70
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
5396e931db
gnu: r-dearseq: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.20.0.

Change-Id: I642796ab34c3636db8615ece31e09124337569a3
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
a1a675cfdc
gnu: r-damefinder: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.20.0.

Change-Id: Idbda0f7fd7c795dbc9cdb66466b9708b6ca75ee6
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
6b9107adc0
gnu: r-dama: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-dama): Update to 1.80.0.

Change-Id: I5c0859cb508f8b3d0db329301f389f462af1f86c
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
eebc7ea0ac
gnu: r-cummerbund: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.50.0.

Change-Id: I7200533dc84c1a128ce7351172fb41238698a6ee
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
713040e66f
gnu: r-csaw: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-csaw): Update to 1.42.0.
[propagated-inputs]: Remove r-zlibbioc.

Change-Id: Ia429e2ddfbb0e246833636842aeff1e3c2eb1998
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
a9e3ca0488
gnu: r-coverageview: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.46.0.

Change-Id: Ib5a8b52e15ec3d85c9582137cb3b4191a77f2876
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
0fd8430fe1
gnu: r-coregx: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-coregx): Update to 2.12.0.

Change-Id: I69349b6a20424a9d2beaff1f7bf9f2c9e023ef76
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
f4b7068259
gnu: r-chihaya: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-chihaya): Update to 1.8.0.

Change-Id: I87b10504be5edec00579c02821a3367da9961fb5
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
c82badf5bd
gnu: r-cellid: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-cellid): Update to 1.16.0.

Change-Id: I1b6aaae139be30d5714125aee3ff212452886cc7
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
af9ce08e55
gnu: r-ccfindr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-ccfindr): Update to 1.28.0.

Change-Id: I63c9ce2143e94cafbbf63e656c5b44791881247e
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
b3003a3f1e
gnu: r-cardelino: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.10.0.
[native-inputs]: Add r-covr.

Change-Id: I29cdf246d3eb2a85a8ddd62f7d260380ade28f17
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
672db326ab
gnu: r-breakpointr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-breakpointr): Update to 1.26.0.

Change-Id: I1bd9ec159323e6f4f8c46473969b3710d241afb6
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
db5f6c1cee
gnu: r-biocversion: Update to 3.21.1.
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.21.1.

Change-Id: If09a18cc74568418a1709168ed5880aab961503a
2025-05-12 08:54:22 +02:00
Ricardo Wurmus
b98410aa52
gnu: r-barcodetrackr: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-barcodetrackr): Update to 1.16.0.

Change-Id: I9f6bf2a26894e8f1ac09abcd94f08a9151ab2d20
2025-05-12 08:54:22 +02:00
Ricardo Wurmus
8b3e1d00a8
gnu: r-banocc: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-banocc): Update to 1.32.0.

Change-Id: Ifbc52a3251ce543476d480e3f2693c520dccaaea
2025-05-12 08:54:22 +02:00
Ricardo Wurmus
d11e78f9dc
gnu: r-bandits: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.24.0.

Change-Id: Id1b9bcf37631edc5b20246c6bbdbdc991de8c365
2025-05-12 08:54:22 +02:00
Ricardo Wurmus
cb6e002032
gnu: r-bambu: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.10.0.

Change-Id: I841d62e513d3462df1343e05211b7bf1366b400f
2025-05-12 08:54:22 +02:00
Ricardo Wurmus
00048cdb28
gnu: r-badregionfinder: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-badregionfinder): Update to 1.36.0.

Change-Id: Ibbe72bb3b7868b6cd7c16a64ff1e0979eab3638f
2025-05-12 08:54:22 +02:00
Ricardo Wurmus
81f3ef3289
gnu: r-bader: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-bader): Update to 1.46.0.

Change-Id: I82801d2389eb3e4e92e357b90b6675cb6f6e5b2d
2025-05-12 08:54:22 +02:00
Ricardo Wurmus
07fd5200f6
gnu: r-bags: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-bags): Update to 2.48.0.

Change-Id: I9c60d15e06f27423ef916d777a7976b950f6f89a
2025-05-12 08:54:22 +02:00
Ricardo Wurmus
679bebac9a
gnu: r-baalchip: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-baalchip): Update to 1.34.0.
[native-inputs]: Add r-biocgenerics.

Change-Id: I6c61a9f26964bad0d8f2540ee0e4a07b338fb31b
2025-05-12 08:54:22 +02:00
Ricardo Wurmus
35e5c6af4b
gnu: r-awst: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-awst): Update to 1.16.0.

Change-Id: I98723afb9d313cb20f0c07378c9faa2a7ccbdcc2
2025-05-12 08:54:21 +02:00
Ricardo Wurmus
49d2fd16d6
gnu: r-awfisher: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-awfisher): Update to 1.22.0.

Change-Id: Ic68f0d96276b1b5b67685b493a86a24652976af8
2025-05-12 08:54:21 +02:00
Ricardo Wurmus
e517c883b8
gnu: r-attract: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-attract): Update to 1.60.0.

Change-Id: Iffcca3b11ca28e1e35ec54cc6807437399010ee7
2025-05-12 08:54:21 +02:00
Ricardo Wurmus
fbc9edab19
gnu: r-atsnp: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-atsnp): Update to 1.24.0.
[native-inputs]: Remove r-testthat.

Change-Id: I5425cc1ba4103e03e4aecf0ea398d9551201549c
2025-05-12 08:54:21 +02:00
Ricardo Wurmus
2f99ca1cec
gnu: r-atena: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-atena): Update to 1.14.0.

Change-Id: I5c8118fa6b9f82831e085cda4a34dcf57e77630d
2025-05-12 08:54:21 +02:00
Ricardo Wurmus
4ba78d80d8
gnu: r-assorthead: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-assorthead): Update to 1.2.0.

Change-Id: Id0840fe619c569cd07005c02267819b6f3108aaf
2025-05-12 08:54:21 +02:00
Ricardo Wurmus
d2bbdd4324
gnu: r-asset: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-asset): Update to 2.26.0.

Change-Id: I25eccac2c8e38d73d9a2fd610dd3792ee4e5e340
2025-05-12 08:54:21 +02:00
Ricardo Wurmus
58c1e71a1a
gnu: r-assessorf: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-assessorf): Update to 1.26.0.

Change-Id: I2d320041eff72d8de07e5f1e8bac7f1214686634
2025-05-12 08:54:21 +02:00
Ricardo Wurmus
c1a454afb4
gnu: r-aspli: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-aspli): Update to 2.18.0.

Change-Id: Ied780f1885c4ee91315cdd40d4d4a4280836ecca
2025-05-12 08:54:21 +02:00
Ricardo Wurmus
1f855f279d
gnu: r-asics: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-asics): Update to 2.24.0.

Change-Id: I0d15d30dcf26baa3c2117c0afe15bca9f0c7ba6c
2025-05-12 08:54:20 +02:00
Ricardo Wurmus
7d5b34ba71
gnu: r-asgsca: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-asgsca): Update to 1.42.0.

Change-Id: I90c62b6c8cf2ed403986f6c76570aaf8784cbc79
2025-05-12 08:54:20 +02:00
Ricardo Wurmus
ca7d8a2c75
gnu: r-aseb: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-aseb): Update to 1.52.0.

Change-Id: I24bdae5f5ab8b9eed4df0ddbc2a57ffcd516a079
2025-05-12 08:54:20 +02:00
Ricardo Wurmus
410c5ab638
gnu: r-asafe: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.34.0.

Change-Id: I30d62f866ff2598ddcea646397a8e678f34cb737
2025-05-12 08:54:20 +02:00
Ricardo Wurmus
e70fc3f94b
gnu: r-arrayquality: Update to 1.86.0.
* gnu/packages/bioconductor.scm (r-arrayquality): Update to 1.86.0.

Change-Id: I126b62c42c1a4e2b9e1d2560fb3685e4b710a5ba
2025-05-12 08:54:20 +02:00
Ricardo Wurmus
0385c244c4
gnu: r-arraymvout: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-arraymvout): Update to 1.66.0.

Change-Id: I6f8d67a535f2d4cc5b19b674a5d0c5d62f032bdb
2025-05-12 08:54:20 +02:00
Ricardo Wurmus
837a67135f
gnu: r-arrayexpress: Update to 1.67.1.
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.67.1.

Change-Id: I24c5ea596b95dacd7cddb8c1250abbf66ae9ef22
2025-05-12 08:54:20 +02:00