1
Fork 0
mirror of https://https.git.savannah.gnu.org/git/guix.git/ synced 2025-07-15 19:40:46 +02:00
Commit graph

7938 commits

Author SHA1 Message Date
Ricardo Wurmus
455f34b837
gnu: r-rdisop: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-rdisop): Update to 1.68.0.

Change-Id: Ia8423eea89f7d3e9473bf20905c1aab6ccc6c59e
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
9a618dd6a6
gnu: r-raggedexperiment: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-raggedexperiment): Update to 1.32.0.

Change-Id: I6dc3c2e8136828dc88ce4207dfcf9b1076bc17d8
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
5f758fce96
gnu: r-radiogx: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-radiogx): Update to 2.12.0.

Change-Id: I504d9c672785cb263f26fa12d340fcbb04936a2e
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
3d5454f578
gnu: r-r4rna: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-r4rna): Update to 1.36.0.

Change-Id: Ica94f5e4c6a88312631f050f8d0b2d82021f2df5
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
0c2dd8443d
gnu: r-r3cseq: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-r3cseq): Update to 1.54.0.

Change-Id: I9882221f384354fc25d948e88954af47c39fb2a5
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
973de480da
gnu: r-hpar: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.50.0.

Change-Id: I694a8fba24af5b136a3bad8dc688b69b1b012654
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
3cd007420d
gnu: r-harshlight: Update to 1.79.0.
* gnu/packages/bioconductor.scm (r-harshlight): Update to 1.79.0.

Change-Id: If3b51b8621644c5218506b45df8aa852f727cbcb
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
6bd47f0047
gnu: r-gypsum: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-gypsum): Update to 1.4.0.
[native-inputs]: Add r-dbi, r-digest, and r-rsqlite.

Change-Id: I9c47d813f75c0e3ea9f4f39ed295a1b603fc44ff
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
a4b146f1c7
gnu: r-gsva: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-gsva): Update to 2.2.0.

Change-Id: Ieab3231bded2bdc5ed7b0049deb85d8596f7eec7
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
fbc9a60461
gnu: r-gostats: Update to 2.74.0.
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.74.0.

Change-Id: Ib3fe20301d325ef58991b1af420e377d49ac5f40
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
5d7d0bcc65
gnu: r-globaltest: Update to 5.62.0.
* gnu/packages/bioconductor.scm (r-globaltest): Update to 5.62.0.

Change-Id: I9299108c1105893d7d9c535bf0e5a10f5e7321ab
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
4a0ee3dc28
gnu: r-globalancova: Update to 4.26.0.
* gnu/packages/bioconductor.scm (r-globalancova): Update to 4.26.0.

Change-Id: Ibf3faf1bccd53bb05be4c8270b5ec22b3b1e3e2c
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
6f1e2bdfbe
gnu: r-glad: Update to 2.72.0.
* gnu/packages/bioconductor.scm (r-glad): Update to 2.72.0.

Change-Id: I83c49e4b66f7f3e7e5d737205cf895e1c563db0d
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
7508a1f82d
gnu: r-genomicfiles: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.44.0.

Change-Id: I9861b10b2c5df1bbe1b7ed332c4862b8cb082b1e
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
5610a1215b
gnu: r-genomicdatacommons: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-genomicdatacommons): Update to 1.32.0.

Change-Id: I06ef3a13e65765430e6cc8fdb00eab618abf84f9
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
5895283a9a
gnu: r-genomeinfodb: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.44.0.

Change-Id: If3948b1ead198467c8a211feaaa8881f43935fb2
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
8f18184785
gnu: r-genefilter: Update to 1.90.0.
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.90.0.
[native-inputs]: Add r-all.

Change-Id: Idc105168d93ab5a36a2f919b8da962e1392e159d
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
2394a929f7
gnu: r-gage: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-gage): Update to 2.58.0.

Change-Id: Ic44ffec8aa76aafb0e3f42e286b364d1b2dfc2b4
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
026e122337
gnu: r-fastseg: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.54.0.

Change-Id: Icea08df66866a5f6599ad7c49609a2e5ada94ae6
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
ad68148cc8
gnu: r-epidish: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-epidish): Update to 2.24.0.

Change-Id: I724be2ffcdca7ac249218f52216e2b0dd46c1e24
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
548c747c73
gnu: r-enhancedvolcano: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-enhancedvolcano): Update to 1.26.0.

Change-Id: I3769dd7613d14eecc63d17e9ff60cd116b7bec94
2025-05-12 08:54:28 +02:00
Ricardo Wurmus
e1d7edfe70
gnu: r-edger: Update to 4.6.1.
* gnu/packages/bioconductor.scm (r-edger): Update to 4.6.1.

Change-Id: I943375816105486799e0a94860c54cdd5fe0fcec
2025-05-12 08:54:28 +02:00
Ricardo Wurmus
471d1fb21a
gnu: r-edaseq: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.42.0.

Change-Id: I6c955e1b5760fd22e36b9fb1b067753cb876a987
2025-05-12 08:54:28 +02:00
Ricardo Wurmus
f74d05f64e
gnu: r-dittoseq: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.20.0.
[native-inputs]: Remove r-complexheatmap, r-ggplot-multistats, r-ggrastr, and
r-plotly; add r-seurat.

Change-Id: Ic681f51fc15b55a45351001895d1aecb2611759d
2025-05-12 08:54:28 +02:00
Ricardo Wurmus
48a485bf50
gnu: r-dirichletmultinomial: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.50.0.

Change-Id: I6745bf57038f17950dc1899e3fa01c84cc782f80
2025-05-12 08:54:28 +02:00
Ricardo Wurmus
40b9e1db52
gnu: r-diffcyt: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.28.0.

Change-Id: I3e00af55ff73a21a4e05d761ad0c636b96d5de44
2025-05-12 08:54:28 +02:00
Ricardo Wurmus
9e666d5b87
gnu: r-dexseq: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.54.0.
[native-inputs]: Add r-glmgampoi.

Change-Id: I8961fcebf0ba5b9f02583d2edff56bdee79f9f43
2025-05-12 08:54:28 +02:00
Ricardo Wurmus
117cffa844
gnu: r-complexheatmap: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.24.0.
[native-inputs]: Add r-gplots.

Change-Id: I6bf59d57390d2dedb2dfe39e366877d0f78eafd1
2025-05-12 08:54:28 +02:00
Ricardo Wurmus
69e0115ec2
gnu: r-chipseq: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.58.0.

Change-Id: I551f93e9cf5ba2835147824075ab745624cb49f8
2025-05-12 08:54:28 +02:00
Ricardo Wurmus
8e15d7ae7b
gnu: r-chipseeker: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.44.0.

Change-Id: I399306577a4878aa54aca2668a36200fc3ea7995
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
d6f10eb7f6
gnu: r-champ: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-champ): Update to 2.38.0.

Change-Id: I7601146f2446f0ecd192107f1e9d3e23d56fb26c
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
6fc44ddda8
gnu: r-category: Update to 2.74.0.
* gnu/packages/bioconductor.scm (r-category): Update to 2.74.0.

Change-Id: Ib2b486613b733773cd938382b8884c6c656743b9
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
5990c56a74
gnu: r-biostrings: Update to 2.76.0.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.76.0.

Change-Id: I79e1b7be7bc0b21c0e662127eb29a8bde89dfe2c
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
c0134b79a8
gnu: r-biomart: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.64.0.

Change-Id: I7c02a16eb87c4ca33551155df0a2c687275263d6
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
1f57a1db08
gnu: r-bamsignals: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.40.0.

Change-Id: Id959b3e8f278296d69ac49a6e66c1777ef232165
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
bbda45d404
gnu: r-annotationfilter: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.32.0.

Change-Id: If8928c4d1d02594994a08495b3b43994a60926f8
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
0e774ade25
gnu: r-affxparser: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.80.0.

Change-Id: I89c59d3780b20c4584f8141bdbf88722eb960bca
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
991a844a18
gnu: r-affycoretools: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.80.0.

Change-Id: I23450c5daa29ba395708fba62af8e4bfd5c51969
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
2aedd59c4e
gnu: r-affycontam: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.66.0.

Change-Id: I65de3dee28cd1f0bd0040e25f39a0bcb8dea39e7
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
dbc3e1e423
gnu: r-affycomp: Update to 1.84.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.84.0.

Change-Id: I03fdb9bc8898df4a752a0e7d6925b3387578a2bc
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
f3a8a6ff1a
gnu: r-nebulosa: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-nebulosa): Update to 1.18.0.

Change-Id: I561c418b3d4f0f56ddfce63a707bfc3ad2005359
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
4e9417729a
gnu: r-italics: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-italics): Update to 2.68.0.

Change-Id: Ibc0230684e4b46b953960f16fce0fc9dd460af38
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
06c208e2a6
gnu: r-isoformswitchanalyzer: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.8.0.

Change-Id: I15b0b2a2724fb00e79afec0456e46451ffb9bbf6
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
a236b7bd4b
gnu: r-iranges: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.42.0.

Change-Id: Ibe5d8338987d50e2a72e7e0fef03832a71a22ccc
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
f6f264ef35
gnu: r-infercnv: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.24.0.

Change-Id: I15a665cd93123b5e3c7d9f2c0d8c18fa1e96047b
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
30a2c7e2d3
gnu: r-ideoviz: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.44.0.

Change-Id: I4771b11f85b88bf094531293637ed284ecc7ca53
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
ae47631a5a
gnu: r-dyndoc: Update to 1.86.0.
* gnu/packages/bioconductor.scm (r-dyndoc): Update to 1.86.0.

Change-Id: Ia85730074f3e2376e64d8647b6c0c6be3caaa646
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
c1e3558c45
gnu: r-dss: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-dss): Update to 2.56.0.

Change-Id: I815058f2da045ce1f2247145bafc23a83fefbd81
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
4a8e2bcae2
gnu: r-dropletutils: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-dropletutils): Update to 1.28.0.

Change-Id: Ibe37b562058659ae3a93d723062df3af1dac003e
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
3edec3fd3b
gnu: r-dmrcate: Update to 3.3.1.
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.3.1.

Change-Id: I837e99a4515b58dcb8990a54439f742c8ea3af18
2025-05-12 08:54:25 +02:00